genome.fa.s11.2.7.7.80.10.50.1000.125.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr6
Parameters: 2 7 7 80 10 50 1000
Length:  44797108

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   

This is table  125  of  144  ( 17221 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38752644--38752684	7	5.9	7	82	0	55	29	48	0	21	1.50
38752644--38752684	21	2.0	21	95	0	73	29	48	0	21	1.50
38752655--38752708	21	2.6	21	84	0	63	35	46	0	18	1.50
38752703--38752740	14	2.7	15	84	12	53	42	28	2	26	1.69
38752894--38752950	25	2.3	24	87	3	87	61	1	0	36	1.07
38753023--38753063	21	2.0	20	85	4	55	39	41	0	19	1.52
38753054--38753095	14	2.9	14	82	6	57	35	35	0	28	1.58
38753050--38753096	15	3.3	15	82	8	62	40	31	0	27	1.57
38753305--38753359	25	2.2	25	75	12	60	23	10	5	60	1.51
38753444--38753563	41	2.9	41	93	0	204	30	29	19	20	1.97
38756062--38756090	12	2.4	12	100	0	58	31	13	20	34	1.92
38763357--38763392	16	2.2	17	90	5	56	44	22	13	19	1.86
38763356--38763394	17	2.3	18	82	13	55	46	20	12	20	1.83
38763374--38763449	27	2.8	26	82	5	98	46	18	15	19	1.85
38775904--38775955	23	2.2	24	83	10	63	3	26	0	69	1.06
38776333--38776504	85	2.0	85	86	2	238	32	16	18	32	1.93
38777738--38777790	23	2.4	22	84	9	72	39	22	20	16	1.92
38778246--38778282	18	2.1	18	90	5	58	32	18	0	48	1.49
38778781--38778829	19	2.5	20	87	6	66	38	8	4	48	1.52
38779028--38779065	14	2.4	17	87	12	55	52	0	0	47	1.00
38779027--38779091	28	2.3	27	80	19	80	49	1	0	49	1.10
38787928--38787955	9	3.1	9	100	0	56	32	10	10	46	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38788388--38788471	41	2.1	39	95	4	150	36	19	7	36	1.79
38788494--38788521	13	2.2	13	100	0	56	14	7	28	50	1.69
38789332--38789487	85	1.8	85	88	0	240	28	16	19	35	1.93
38790670--38790733	23	2.9	22	77	15	78	39	21	20	18	1.93
38794025--38794334	27	11.5	27	83	4	360	41	20	18	19	1.91
38794039--38794333	81	3.6	82	84	4	409	41	21	18	19	1.91
38794733--38794792	29	2.0	32	87	9	90	28	15	15	41	1.86
38795169--38795245	38	2.0	38	94	0	136	38	10	7	42	1.68
38797023--38797071	23	2.1	23	82	14	57	4	24	0	71	1.03
38798090--38798146	29	2.0	29	92	0	96	26	12	24	36	1.91
38799234--38799294	22	2.8	22	75	22	65	45	1	13	39	1.53
38799353--38799377	12	2.1	12	100	0	50	24	24	8	44	1.80
38813065--38813114	24	2.1	23	82	10	57	34	18	14	34	1.90
38818107--38818144	7	5.6	7	96	3	69	73	0	10	15	1.09
38824469--38824525	20	2.9	20	74	25	59	71	1	17	8	1.19
38836448--38837056	219	2.8	212	86	5	873	32	18	20	28	1.96
38836448--38836949	44	11.6	44	69	8	196	32	18	20	28	1.96
38836901--38837213	154	2.0	153	95	0	554	33	16	19	30	1.94
38837164--38837340	39	4.5	39	74	12	139	32	16	23	27	1.96
38837202--38837380	82	2.2	82	92	0	295	31	18	22	27	1.97
38837232--38837429	44	4.7	44	78	8	212	30	18	22	27	1.97
38837159--38837428	126	2.2	121	82	7	303	32	18	21	27	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38840736--38840760	10	2.5	10	100	0	50	8	0	0	92	0.40
38840734--38840776	18	2.4	18	84	7	52	9	2	4	83	0.87
38845111--38845140	12	2.4	13	94	5	53	40	0	0	60	0.97
38852087--38852142	25	2.2	25	84	6	69	32	23	23	21	1.98
38856087--38856315	107	2.1	107	95	0	413	30	10	15	44	1.79
38856356--38856385	12	2.4	13	94	5	53	40	0	0	60	0.97
38858292--38858379	25	3.5	26	78	9	85	30	25	22	21	1.99
38862382--38862421	20	2.0	20	85	0	53	47	0	7	45	1.31
38867135--38867177	20	2.1	21	86	4	61	62	16	0	20	1.32
38875891--38875927	3	12.3	3	94	0	65	32	2	0	64	1.07
38884542--38884849	43	7.3	43	78	6	299	36	25	14	24	1.93
38884485--38884682	85	2.4	85	92	3	321	34	26	15	22	1.94
38884573--38884849	85	3.3	84	81	6	276	36	24	14	24	1.93
38884530--38884819	128	2.3	128	91	3	460	36	25	14	23	1.93
38884826--38884875	26	1.9	26	91	0	82	28	34	20	18	1.95
38886634--38886916	85	3.4	85	93	1	473	34	26	15	22	1.95
38886722--38887080	128	2.8	126	86	5	460	36	24	15	24	1.93
38886807--38887083	85	3.3	84	81	6	276	36	24	14	24	1.93
38887060--38887109	26	1.9	26	91	0	82	28	34	20	18	1.95
38895626--38895657	11	2.9	11	90	0	55	31	9	21	37	1.85
38904732--38904762	14	2.2	14	94	0	53	38	0	12	48	1.42
38907675--38907740	30	2.2	30	91	0	105	16	33	31	18	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38908168--38908234	16	4.4	15	72	20	59	20	4	1	73	1.09
38908160--38908203	23	2.0	22	90	4	70	22	0	2	75	0.92
38908341--38908417	10	7.6	10	71	17	61	11	6	5	76	1.13
38908348--38908429	17	4.8	16	76	15	76	12	7	4	75	1.16
38915724--38915751	14	2.0	14	100	0	56	50	21	14	14	1.78
38919982--38920025	12	3.4	12	87	9	52	75	2	22	0	0.92
38919981--38920036	23	2.5	22	77	8	58	73	3	19	3	1.13
38924231--38924304	22	3.3	22	77	7	87	24	21	21	32	1.98
38925609--38925693	31	2.8	31	80	1	100	30	16	10	42	1.82
38934861--38935189	25	13.2	24	68	19	90	36	23	12	27	1.90
38934891--38935166	99	2.8	100	87	2	378	37	22	12	27	1.90
38934861--38935182	50	6.5	50	82	2	360	37	23	11	27	1.90
38943424--38943516	39	2.5	37	80	7	98	27	29	22	20	1.98
38944639--38944674	18	1.9	18	88	5	54	13	13	2	69	1.30
38944830--38944879	5	10.2	5	76	20	52	58	0	0	42	0.98
38944828--38944879	22	2.4	21	83	6	68	55	0	0	44	0.99
38944829--38944879	17	3.0	17	82	5	59	56	0	0	43	0.99
38956955--38957018	20	3.2	20	75	0	56	32	14	25	28	1.94
38957421--38957445	12	2.1	12	100	0	50	52	8	0	40	1.31
38962266--38962307	22	1.9	22	95	0	75	52	4	21	21	1.65
38964037--38964066	12	2.5	12	100	0	60	50	0	13	36	1.42
38987513--38987537	12	2.1	12	100	0	50	36	24	0	40	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38989771--38989813	3	14.3	3	100	0	86	32	0	0	67	0.91
38990168--38990227	27	2.2	28	80	11	72	60	1	0	38	1.07
38990675--38990760	32	2.8	30	70	8	75	54	4	8	32	1.50
38994379--38994432	27	2.0	28	85	3	74	50	0	7	42	1.30
38997635--38997803	68	2.6	62	73	20	159	40	2	4	51	1.38
39004550--39004642	48	1.9	48	97	0	177	48	12	16	22	1.80
39007036--39007213	27	6.6	27	83	3	205	26	15	28	29	1.96
39007037--39007192	82	1.9	81	88	3	233	26	15	28	29	1.96
39007033--39007213	82	2.2	81	83	2	229	27	15	27	29	1.96
39018988--39019174	51	3.7	49	74	5	169	23	16	28	32	1.96
39019187--39019273	45	1.9	45	92	0	147	21	18	25	34	1.96
39023616--39023675	28	2.1	28	84	6	77	48	0	6	45	1.29
39026736--39026776	16	2.6	16	96	0	73	36	14	14	34	1.87
39031927--39032016	41	2.2	41	90	2	137	30	21	25	23	1.99
39032158--39032345	78	2.5	75	79	9	202	23	37	2	37	1.67
39033328--39033361	18	1.9	18	88	5	52	32	20	8	38	1.84
39036390--39036497	43	2.5	43	80	0	108	30	19	22	27	1.98
39036462--39036712	42	5.9	43	79	6	244	24	17	29	27	1.98
39036474--39036703	127	1.8	126	84	2	318	24	17	28	29	1.97
39037145--39037203	17	3.4	17	76	17	66	61	6	0	32	1.22
39039816--39039867	23	2.3	22	83	9	61	59	7	1	30	1.36
39043963--39044014	6	8.5	6	86	14	63	78	0	5	15	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39045351--39047825	823	3.0	823	99	0	4932	29	20	18	30	1.97
39055201--39055257	25	2.3	24	75	21	64	42	0	3	54	1.17
39058262--39058654	126	3.1	124	83	4	479	28	16	17	37	1.91
39058717--39058840	34	3.6	33	83	6	158	45	16	0	37	1.47
39058711--39058840	68	1.9	68	87	4	190	46	15	0	37	1.46
39058822--39058864	22	2.0	22	85	0	59	58	27	2	11	1.46
39073284--39073731	45	10.0	45	79	3	465	29	16	23	29	1.97
39073789--39074123	45	7.6	45	69	11	176	28	19	23	28	1.98
39078579--39078971	125	3.1	124	84	4	497	28	16	17	37	1.91
39079046--39079138	34	2.8	33	90	4	141	40	16	0	43	1.48

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144