genome.fa.s11.2.7.7.80.10.50.1000.107.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr6
Parameters: 2 7 7 80 10 50 1000
Length:  44797108

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   

This is table  107  of  144  ( 17221 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32819570--32819630	29	2.1	29	100	0	122	22	19	6	50	1.70
32825266--32825290	12	2.1	12	100	0	50	16	0	0	84	0.63
32826212--32826712	3	166.0	3	67	18	145	30	7	2	59	1.40
32826380--32826418	20	2.0	20	89	0	60	33	5	0	61	1.18
32826639--32826679	20	2.0	20	86	9	57	36	4	0	58	1.20
32826647--32826709	20	3.2	20	75	2	56	30	3	3	63	1.25
32826700--32826756	23	2.5	22	80	5	60	21	8	5	64	1.41
32831775--32831800	13	2.0	13	100	0	52	84	0	15	0	0.62
32833780--32834363	44	13.5	44	68	12	255	28	19	24	27	1.98
32833774--32834368	130	4.6	130	88	2	881	28	19	24	27	1.98
32834251--32834455	86	2.4	86	84	3	268	27	20	22	28	1.99
32834411--32835208	44	18.0	44	68	13	229	27	18	27	26	1.98
32834513--32834720	90	2.3	89	80	6	217	28	19	28	23	1.98
32834598--32835277	178	3.8	178	88	1	997	27	18	26	27	1.98
32835396--32835555	44	3.6	44	78	3	117	27	19	21	31	1.97
32840056--32840231	46	3.8	46	74	12	189	21	19	28	29	1.98
32840053--32840224	93	1.8	93	93	0	299	22	20	29	28	1.98
32843155--32843234	15	5.4	15	76	7	74	11	17	13	57	1.65
32846954--32847013	15	4.1	15	72	18	54	60	15	13	11	1.60
32849395--32849582	40	4.7	40	94	0	313	22	26	20	30	1.98
32853427--32853459	17	2.1	16	88	11	50	45	12	0	42	1.41
32854592--32854693	50	2.0	50	96	3	188	50	14	1	33	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32877132--32877387	130	2.0	130	91	1	415	48	8	21	21	1.76
32883398--32883452	22	2.5	22	81	0	65	18	1	41	38	1.61
32892833--32892949	48	2.4	48	84	2	137	35	23	21	18	1.95
32893875--32893926	22	2.4	21	80	6	59	17	1	44	36	1.60
32898456--32898670	95	2.3	95	92	1	351	34	6	19	40	1.76
32914030--32914207	27	6.6	27	83	3	205	26	15	28	29	1.96
32914031--32914186	82	1.9	81	88	3	233	26	15	28	29	1.96
32914027--32914207	82	2.2	81	83	2	229	27	15	27	29	1.96
32922093--32922270	27	6.6	27	83	3	205	26	15	28	29	1.96
32922094--32922249	82	1.9	81	88	3	233	26	15	28	29	1.96
32922090--32922270	82	2.2	81	83	2	229	27	15	27	29	1.96
32925239--32925276	19	2.0	19	85	10	51	21	42	0	36	1.53
32929784--32929821	19	2.0	19	85	10	51	21	42	0	36	1.53
32932737--32932969	79	2.9	79	90	0	376	20	38	20	21	1.94
32936308--32936353	21	2.3	20	78	14	51	30	6	17	45	1.73
32947120--32947167	25	1.9	25	86	0	69	33	2	14	50	1.55
32949440--32949578	39	3.5	39	83	7	140	20	26	17	35	1.94
32954986--32955056	29	2.4	29	80	0	88	36	21	7	35	1.80
32955342--32955407	8	7.9	8	82	14	80	69	0	0	30	0.88
32955342--32955407	27	2.6	27	90	7	102	69	0	0	30	0.88
32955344--32955407	17	3.7	19	78	14	68	70	0	0	29	0.88
32964783--32964849	28	2.4	28	82	7	75	28	13	11	46	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32966129--32966168	20	1.9	22	90	10	66	77	0	7	15	0.98
32966137--32966219	37	2.2	37	87	4	114	65	0	13	21	1.27
32967300--32967373	6	13.0	6	74	7	57	72	0	21	5	1.04
32967277--32967373	39	2.5	40	84	5	135	71	1	19	8	1.18
32971437--32971487	23	2.2	23	92	0	84	41	21	9	27	1.84
32980159--32980388	116	2.0	116	91	1	372	26	15	18	40	1.90
32980883--32980933	22	2.3	23	83	16	72	41	0	7	50	1.31
32981929--32982104	56	3.1	56	98	0	334	44	9	22	22	1.82
32991955--32992132	27	6.6	26	82	6	178	26	15	28	29	1.96
32991956--32992111	82	1.9	81	86	3	224	26	16	28	28	1.97
32991952--32992132	82	2.2	81	82	2	220	27	16	27	29	1.97
32992037--32992143	27	3.9	27	85	1	70	26	14	28	30	1.95
33003245--33003354	25	4.4	25	86	6	152	22	24	20	31	1.98
33006058--33006107	26	1.9	26	91	0	82	30	26	4	40	1.74
33006053--33006148	27	3.6	27	81	6	108	27	21	8	42	1.81
33012557--33012586	12	2.5	12	94	0	51	6	43	26	23	1.78
33024932--33024973	15	2.9	15	92	3	68	23	4	7	64	1.38
33030977--33031154	27	6.6	27	83	3	205	26	15	28	29	1.96
33030978--33031133	82	1.9	81	88	3	233	26	15	28	29	1.96
33030974--33031154	82	2.2	81	83	2	229	27	15	27	29	1.96
33039040--33039217	27	6.6	27	83	3	205	26	15	28	29	1.96
33039041--33039196	82	1.9	81	88	3	233	26	15	28	29	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33039037--33039217	82	2.2	81	83	2	229	27	15	27	29	1.96
33051296--33051473	27	6.6	27	83	3	205	26	15	28	29	1.96
33051297--33051452	82	1.9	81	88	3	233	26	15	28	29	1.96
33051293--33051473	82	2.2	81	83	2	229	27	15	27	29	1.96
33059486--33059663	27	6.6	27	83	3	205	26	15	28	29	1.96
33059487--33059642	82	1.9	81	88	3	233	26	15	28	29	1.96
33059483--33059663	82	2.2	81	83	2	229	27	15	27	29	1.96
33082720--33082785	21	3.2	21	69	16	66	16	34	18	30	1.93
33082683--33082785	40	2.5	41	87	1	145	18	30	18	33	1.95
33090967--33091229	40	6.6	39	86	4	278	25	27	21	25	1.99
33090967--33091229	120	2.2	119	82	4	307	25	27	21	25	1.99
33091161--33091238	40	1.9	41	82	10	97	26	28	20	24	1.99
33098917--33099179	40	6.6	39	86	4	278	25	27	21	25	1.99
33098917--33099179	120	2.2	119	82	4	307	25	27	21	25	1.99
33099111--33099188	40	1.9	41	82	10	97	26	28	20	24	1.99
33107602--33107647	23	2.1	21	84	8	56	34	0	39	26	1.57
33116718--33116755	15	2.5	15	100	0	76	7	0	44	47	1.32
33120449--33120531	25	3.4	24	72	9	69	38	18	24	19	1.93
33132712--33132742	9	3.4	9	95	0	53	6	35	3	54	1.42
33132710--33132758	18	2.7	18	81	6	55	6	32	4	57	1.42
33140699--33140739	21	2.0	21	85	0	55	24	17	7	51	1.70
33143447--33143498	26	2.0	26	100	0	104	23	15	23	38	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33144475--33144607	28	4.8	28	85	3	169	30	24	20	24	1.99
33144981--33146803	161	11.3	162	81	4	1825	16	17	20	44	1.86
33144983--33146826	27	68.6	27	81	4	1748	16	17	20	45	1.86
33149977--33152327	303	7.8	301	83	5	2426	27	17	21	34	1.95
33149977--33152327	601	3.9	605	84	4	2796	27	17	21	34	1.95
33152164--33152522	195	1.8	194	85	4	508	24	16	20	37	1.93
33152788--33154479	303	5.7	300	81	4	1783	27	18	21	31	1.97
33153394--33154479	281	3.8	283	82	5	1096	26	18	22	32	1.97
33154293--33154685	206	1.9	206	90	1	626	26	22	25	25	2.00
33154480--33155397	303	3.0	302	81	4	1094	27	17	21	33	1.96
33154612--33156169	802	1.9	802	84	2	2065	27	17	21	33	1.96
33155409--33158305	304	9.6	305	83	4	3465	28	17	21	32	1.96
33155404--33158293	607	4.8	606	86	3	3706	28	17	21	32	1.96
33158312--33159746	302	4.8	301	81	7	1604	27	16	21	34	1.95
33159520--33159980	227	2.0	226	87	4	662	29	14	19	36	1.92
33159778--33160320	280	1.9	279	87	2	786	29	17	20	32	1.95
33160325--33160690	194	1.9	195	83	4	479	26	16	19	37	1.93
33160904--33161047	72	2.0	72	95	0	261	34	8	13	43	1.75
33160613--33161346	374	2.0	374	88	1	1085	29	14	20	36	1.92
33160976--33161671	302	2.3	301	84	4	866	28	16	20	34	1.94
33162141--33163257	186	6.0	186	99	0	2225	28	21	27	22	1.99
33163215--33163675	227	2.0	225	89	2	710	29	16	19	35	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33163823--33163963	72	2.0	72	94	0	246	33	9	12	44	1.74
33163895--33164590	302	2.3	301	84	3	846	28	16	19	34	1.94
33164767--33165333	284	2.0	281	84	5	734	25	18	22	32	1.97
33165200--33165660	227	2.0	225	88	3	694	29	16	19	34	1.94
33165808--33165951	72	2.0	72	98	0	279	32	8	15	43	1.76
33165880--33166575	301	2.3	301	83	3	837	28	16	21	34	1.95
33166399--33166770	195	1.9	195	82	5	475	26	16	20	37	1.93
33167188--33167646	227	2.0	226	86	2	638	30	15	18	35	1.93
33165891--33168646	799	3.4	783	79	9	2770	28	17	21	33	1.95
33168012--33168380	193	1.9	195	86	2	528	25	16	20	37	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144