genome.fa.s11.2.7.7.80.10.50.1000.98.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr6
Parameters: 2 7 7 80 10 50 1000
Length:  44797108

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   

This is table  98  of  144  ( 17221 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29975544--29975602	28	2.0	31	83	9	79	50	5	0	44	1.24
29984057--29984338	35	7.8	35	76	9	237	40	14	19	25	1.89
29984057--29984338	73	3.9	71	80	5	282	40	14	19	25	1.89
29984056--29984329	109	2.5	107	82	2	334	40	14	19	25	1.90
29986525--29986595	34	2.3	31	86	13	101	56	4	2	36	1.34
29986534--29986602	34	2.0	34	100	0	138	53	5	2	37	1.40
29986791--29987044	139	1.8	140	85	4	361	31	22	19	26	1.98
29988243--29988346	27	3.9	27	73	5	102	29	33	15	21	1.94
29993195--29993246	27	2.0	27	92	3	88	40	3	5	50	1.45
29996038--29996108	37	1.9	36	86	8	99	38	33	14	14	1.86
29998604--29998628	8	3.1	8	100	0	50	76	0	0	24	0.80
29999024--29999078	28	2.0	27	85	3	74	45	12	9	32	1.74
29999102--29999931	3	276.7	3	100	0	1660	66	0	0	33	0.92
30011397--30011432	18	2.1	17	89	5	54	16	5	11	66	1.40
30019141--30019325	101	1.8	102	89	3	293	23	17	27	31	1.97
30019141--30019325	51	3.7	50	80	6	178	23	17	27	31	1.97
30019247--30019327	26	3.2	26	66	22	71	22	14	28	34	1.94
30019332--30019421	46	2.0	44	85	8	119	24	17	25	32	1.97
30028914--30028947	17	2.0	17	88	11	52	35	5	5	52	1.50
30031405--30031578	91	1.9	91	84	0	231	25	21	15	37	1.93
30034114--30034168	19	2.9	19	86	7	69	50	5	1	41	1.36
30041031--30041215	40	4.7	40	80	7	191	24	21	28	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30041112--30041234	40	3.1	40	83	5	108	24	22	30	22	1.99
30046237--30046288	23	2.3	22	83	6	59	36	9	3	50	1.54
30046275--30046349	36	2.1	36	85	2	98	38	4	0	57	1.18
30046320--30046412	42	2.2	42	81	7	109	39	7	1	51	1.37
30046306--30046405	52	1.9	51	86	9	141	39	7	1	53	1.35
30052290--30052383	44	2.1	44	94	0	170	37	15	22	23	1.93
30053086--30053122	9	4.2	9	86	6	58	78	0	18	2	0.87
30053086--30053122	13	2.8	13	84	15	58	78	0	18	2	0.87
30057716--30057816	49	2.1	49	81	3	114	32	25	14	26	1.95
30059668--30060175	40	12.7	40	98	0	962	22	27	19	30	1.98
30062768--30062928	33	4.7	33	73	18	118	31	26	21	21	1.98
30062909--30063012	42	2.5	42	95	0	190	33	29	14	22	1.93
30062807--30063074	144	1.9	145	94	0	475	32	28	17	20	1.96
30063092--30063393	51	6.0	51	76	10	314	29	28	18	23	1.97
30063100--30063385	101	2.8	101	95	1	493	30	27	18	23	1.98
30068058--30068119	29	2.1	29	90	0	97	35	17	33	12	1.88
30075941--30075986	23	2.0	23	95	0	83	43	15	4	36	1.66
30078318--30078485	40	4.2	40	82	8	148	27	27	20	24	1.99
30078355--30078485	40	3.3	40	89	2	201	28	27	20	23	1.99
30078318--30078538	80	2.8	80	79	11	229	26	27	21	24	1.99
30081942--30082014	26	2.9	27	80	10	82	13	19	26	41	1.88
30082693--30082737	23	2.0	22	82	4	54	33	11	17	37	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30085228--30085335	46	2.4	46	85	3	139	20	21	11	47	1.81
30088355--30088394	21	1.9	21	100	0	80	35	12	22	30	1.91
30088693--30088846	76	2.0	76	98	0	299	28	16	14	40	1.87
30091036--30091068	15	2.1	16	88	5	50	30	15	30	24	1.95
30093879--30093960	40	2.0	40	84	9	105	30	21	20	26	1.98
30095325--30095358	13	2.6	13	85	0	50	52	5	23	17	1.66
30102713--30102877	43	3.8	44	87	3	228	30	26	18	25	1.98
30107614--30107712	47	2.1	48	94	1	173	45	0	7	47	1.30
30107698--30107750	25	2.1	26	82	3	63	18	3	5	71	1.21
30107697--30107750	19	2.8	18	78	10	54	20	3	5	70	1.23
30108260--30108299	20	2.0	21	95	5	73	50	30	0	20	1.49
30108337--30108428	22	4.3	21	71	13	62	45	30	2	21	1.64
30108259--30108384	15	8.9	14	69	11	60	44	33	0	21	1.58
30108610--30108688	41	1.9	41	89	0	122	30	24	21	24	1.99
30108620--30109216	114	5.2	114	87	2	817	27	24	21	25	1.99
30109117--30109259	72	2.0	73	84	4	191	23	25	24	26	2.00
30109114--30109287	72	2.4	72	80	4	172	24	24	25	26	2.00
30111096--30111148	21	2.5	21	81	0	61	33	33	7	24	1.84
30114532--30114567	5	7.2	5	93	0	63	38	16	19	25	1.92
30115071--30115112	17	2.5	17	84	3	59	45	0	26	28	1.54
30117548--30117735	50	3.7	50	87	3	270	22	29	22	25	1.99
30119676--30120384	235	3.0	235	92	0	1152	28	16	17	36	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30132160--30132402	50	4.9	49	90	1	324	25	19	31	23	1.98
30132160--30132404	100	2.5	100	89	0	373	25	19	31	23	1.98
30132663--30132698	16	2.2	16	90	0	54	52	2	27	16	1.57
30138758--30138790	17	1.9	17	100	0	66	18	27	18	36	1.94
30139379--30139403	3	8.3	3	100	0	50	32	0	0	68	0.90
30141089--30141183	42	2.3	42	90	1	147	29	3	16	50	1.61
30142772--30142821	15	3.4	15	94	2	84	24	12	20	44	1.85
30145772--30145812	19	2.2	19	100	0	82	39	4	14	41	1.67
30145834--30145923	42	2.1	42	81	0	108	30	5	13	51	1.64
30147277--30147306	13	2.3	13	94	0	51	46	26	16	10	1.78
30161861--30161903	12	3.4	12	90	6	59	16	11	2	69	1.28
30174092--30174128	17	2.1	19	90	10	60	16	21	0	62	1.33
30177469--30177498	15	2.0	15	93	0	51	70	0	0	30	0.88
30178979--30179035	21	2.6	22	81	13	64	70	1	1	26	1.07
30179603--30179634	12	2.7	12	100	0	64	59	9	0	31	1.29
30184739--30184887	38	3.9	39	81	5	162	34	10	10	44	1.73
30184739--30184887	78	1.9	77	82	9	187	34	10	10	44	1.73
30191046--30191202	38	4.1	38	79	8	140	32	8	10	47	1.69
30191046--30191194	78	1.9	77	81	9	178	33	8	10	46	1.69
30193479--30193503	13	1.9	13	100	0	50	56	0	0	44	0.99
30193973--30194044	18	3.8	20	71	14	62	63	6	0	29	1.20
30219219--30219271	21	2.5	21	84	0	70	30	7	32	30	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30223343--30223404	27	2.3	27	75	10	65	27	20	33	17	1.96
30223390--30223459	27	2.6	27	76	0	77	32	20	27	20	1.97
30229648--30229673	3	8.7	3	100	0	52	30	34	0	34	1.58
30238224--30238256	17	1.9	17	93	0	57	84	0	6	9	0.76
30243580--30243633	25	2.1	26	82	3	65	68	5	5	20	1.30
30247095--30247135	21	2.0	21	85	9	57	26	2	24	46	1.65
30252876--30252913	19	2.0	19	100	0	76	31	5	26	36	1.79
30256193--30256252	21	2.9	21	85	2	77	70	3	0	26	1.03
30271863--30271908	18	2.6	18	86	6	58	43	0	2	54	1.12
30271758--30272050	122	2.4	121	95	1	525	43	0	3	52	1.24
30271857--30272016	31	5.3	30	64	22	84	42	0	3	53	1.23
30271924--30271976	22	2.5	20	77	19	54	37	0	5	56	1.23
30272257--30272304	16	3.1	16	93	3	80	20	33	6	39	1.78
30283344--30283400	23	2.5	23	88	0	69	42	15	24	17	1.88
30284844--30284910	25	2.7	25	79	9	73	28	20	22	28	1.99
30292657--30292735	25	3.2	25	77	16	83	24	20	22	32	1.97
30292622--30292735	50	2.3	51	83	3	133	24	19	22	33	1.97
30294964--30295050	44	2.0	44	80	13	99	19	6	4	68	1.30
30296652--30296698	6	7.8	6	92	0	67	27	2	4	65	1.22
30304522--30304564	21	2.0	21	90	0	68	32	18	9	39	1.83
30305789--30306042	127	2.0	126	96	0	463	28	19	12	38	1.89
30333831--30333997	84	2.0	84	96	0	307	52	14	8	24	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30334249--30334309	26	2.3	26	88	0	86	60	4	4	29	1.38
30334328--30334367	21	1.9	21	84	0	53	57	2	7	32	1.40
30335535--30335569	14	2.4	15	85	9	54	25	5	14	54	1.62
30338939--30339447	251	2.0	251	95	0	919	21	15	18	44	1.86
30341498--30341564	33	1.9	33	82	8	80	49	8	31	10	1.68
30346551--30346623	37	1.9	38	83	2	94	28	38	15	17	1.90
30349167--30349338	40	4.3	40	88	2	222	25	27	21	25	1.99
30357110--30357294	40	4.7	40	81	5	187	25	28	21	24	1.99
30357226--30357303	40	1.9	41	82	10	97	26	28	21	23	1.99
30368551--30368578	14	2.0	14	100	0	56	50	14	21	14	1.78

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144