genome.fa.s11.2.7.7.80.10.50.1000.123.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr6
Parameters: 2 7 7 80 10 50 1000
Length:  44797108

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   

This is table  123  of  144  ( 17221 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38335049--38335934	88	10.1	86	82	6	394	28	26	22	22	1.99
38335049--38335788	263	2.8	262	82	2	887	29	26	22	21	1.99
38335689--38335956	87	3.1	87	92	1	448	28	22	24	24	1.99
38335732--38335961	44	5.3	43	70	6	185	29	20	24	26	1.99
38335689--38335908	43	5.1	43	67	5	165	26	24	24	24	2.00
38337328--38337360	11	3.1	11	82	8	50	18	54	18	9	1.69
38337705--38337746	20	2.1	20	86	0	57	23	4	7	64	1.38
38337975--38338009	10	3.2	11	88	12	54	42	0	0	57	0.99
38338052--38338095	20	2.1	21	87	4	63	13	2	4	79	0.98
38339961--38340019	29	2.1	27	81	9	66	25	10	16	47	1.78
38340235--38340516	126	2.2	125	87	4	399	30	15	21	31	1.95
38344115--38344184	25	2.8	25	86	2	104	40	11	2	45	1.55
38345461--38345500	20	2.0	20	85	9	55	52	10	5	32	1.56
38346248--38346281	15	2.3	15	90	5	52	67	5	0	26	1.13
38346379--38346434	28	2.0	28	86	6	78	55	3	0	41	1.17
38346379--38346436	29	2.0	28	83	9	73	55	3	0	41	1.17
38346470--38346520	22	2.3	21	83	9	66	35	0	31	33	1.58
38346473--38346571	52	1.9	52	87	8	148	38	1	29	31	1.64
38346529--38346595	22	3.0	22	84	0	89	40	1	23	34	1.64
38346808--38346861	29	1.9	27	92	7	90	40	18	14	25	1.89
38349164--38349215	25	2.1	25	100	0	104	46	26	3	23	1.69
38352995--38353114	63	1.9	63	83	10	156	63	5	1	30	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38353226--38353291	29	2.3	29	82	10	73	59	4	3	33	1.33
38353273--38353325	28	2.0	25	82	17	63	56	0	1	41	1.10
38353024--38353401	10	39.6	9	68	17	103	59	4	1	34	1.27
38353989--38354053	29	2.3	28	86	2	94	32	1	1	64	1.12
38353998--38354041	19	2.3	20	80	11	56	34	2	0	63	1.07
38354106--38354176	18	3.9	17	78	17	72	35	0	2	61	1.10
38354112--38354201	37	2.6	34	80	18	96	37	1	2	58	1.17
38354112--38354203	36	2.6	33	76	18	89	38	1	2	58	1.17
38354182--38354247	9	7.4	9	71	21	59	30	1	0	68	0.99
38354203--38354237	11	3.3	11	92	4	54	22	2	0	74	0.95
38354762--38354818	20	2.9	20	78	2	71	38	15	7	38	1.75
38363181--38363219	18	2.2	17	86	13	53	33	0	20	46	1.51
38363445--38363542	23	4.3	23	90	2	162	20	21	26	31	1.98
38363447--38363535	45	2.0	45	95	0	160	19	22	26	31	1.97
38364725--38364840	56	2.1	57	83	8	148	22	14	20	42	1.89
38371027--38371065	16	2.4	16	86	4	51	30	10	15	43	1.80
38376931--38376984	24	2.2	24	86	0	72	51	9	14	24	1.71
38378205--38378252	20	2.5	19	83	12	62	33	16	14	35	1.89
38378215--38378257	20	2.2	20	100	0	86	23	16	13	46	1.83
38379141--38379200	27	2.2	27	81	0	66	25	18	20	36	1.94
38379154--38379296	27	5.3	27	88	0	187	21	14	18	45	1.85
38379656--38379701	20	2.3	21	85	11	69	54	15	4	26	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38381078--38381317	123	2.0	123	92	0	399	28	25	13	32	1.94
38384349--38384394	20	2.3	20	88	0	65	50	17	4	28	1.65
38386185--38386252	31	2.3	29	80	10	75	26	8	19	45	1.79
38391533--38391655	50	2.5	50	80	5	144	27	23	26	21	1.99
38391927--38391975	20	2.5	20	81	15	66	57	6	24	12	1.58
38398350--38398420	5	14.4	5	69	19	51	53	0	0	46	1.00
38398357--38398421	16	3.7	18	76	12	55	52	0	0	47	1.00
38398349--38398421	14	4.9	16	72	16	50	52	0	0	47	1.00
38402888--38402914	13	2.1	13	100	0	54	48	29	0	22	1.51
38403774--38403819	16	2.9	16	78	12	51	45	0	2	52	1.13
38403714--38403924	107	2.0	108	96	0	388	44	1	5	49	1.33
38403881--38403922	15	2.7	16	82	14	52	45	0	2	52	1.13
38403872--38403913	15	2.9	15	82	10	52	47	0	0	52	1.00
38404067--38404157	45	2.0	44	87	6	130	34	27	5	32	1.80
38404138--38404205	16	4.2	16	92	0	109	35	38	0	26	1.57
38411880--38411972	43	2.2	43	84	3	116	35	27	15	21	1.93
38415877--38415940	22	2.9	23	77	11	71	25	4	46	23	1.71
38416975--38417147	90	1.9	90	85	2	240	44	25	1	28	1.64
38417219--38417251	14	2.3	15	94	5	59	36	33	0	30	1.58
38417658--38417874	41	5.3	41	85	0	227	29	25	20	24	1.99
38418458--38418492	18	1.9	18	88	0	52	25	14	11	48	1.77
38420123--38420550	114	3.7	112	77	6	378	24	21	26	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38422006--38422044	13	2.9	13	88	7	60	43	5	12	38	1.65
38424151--38424195	20	2.1	22	84	12	58	13	11	8	66	1.44
38427439--38427466	14	2.0	14	100	0	56	21	35	7	35	1.81
38428445--38428517	29	2.5	29	70	16	69	38	10	5	45	1.63
38428483--38428520	14	2.8	13	88	7	58	36	13	5	44	1.66
38428795--38428885	21	4.1	21	66	14	58	16	1	41	40	1.55
38429659--38429692	14	2.4	14	100	0	68	44	11	0	44	1.40
38429903--38430001	37	2.7	37	84	6	121	22	4	32	41	1.72
38429940--38430033	21	4.7	21	68	17	67	21	3	36	39	1.69
38431936--38432034	19	5.7	19	72	18	74	30	13	19	37	1.89
38432701--38432884	47	4.0	47	78	11	229	38	14	3	44	1.61
38432866--38432956	18	4.9	18	79	15	105	45	10	0	43	1.39
38432866--38432961	39	2.5	38	90	9	144	44	10	0	44	1.38
38432701--38432952	135	1.9	133	83	6	328	39	13	2	44	1.57
38433182--38433239	30	1.9	30	82	6	73	46	13	5	34	1.66
38433200--38433604	9	46.3	9	66	20	114	48	18	1	31	1.59
38433200--38433353	25	6.4	25	73	12	110	48	18	2	31	1.62
38433226--38433560	16	20.9	16	65	24	104	49	18	2	30	1.59
38433337--38433447	44	2.5	44	94	2	195	52	18	0	29	1.46
38433338--38433575	25	9.9	25	72	14	134	49	18	1	31	1.57
38435334--38435404	21	3.4	21	94	0	124	32	16	49	1	1.55
38437947--38438128	43	4.3	42	86	6	233	26	18	29	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38437947--38438128	86	2.1	86	88	3	269	26	18	29	25	1.98
38439987--38440142	75	2.1	75	100	0	312	28	15	23	32	1.95
38440145--38440260	39	2.9	39	83	3	135	33	19	23	23	1.97
38440150--38440280	40	3.3	40	75	10	117	32	21	24	21	1.98
38440408--38440504	40	2.4	40	92	1	167	36	2	3	58	1.25
38440733--38440836	14	7.4	14	69	14	70	19	2	29	48	1.63
38440791--38440843	7	7.6	7	84	0	61	20	1	26	50	1.58
38440733--38440836	21	4.9	21	69	11	68	19	2	29	48	1.63
38440879--38440922	7	6.3	7	80	19	56	18	0	38	43	1.50
38440879--38440920	15	2.9	15	86	6	61	16	0	38	45	1.48
38440972--38441020	7	7.0	7	80	0	62	18	0	36	44	1.50
38440967--38441020	14	3.9	14	90	0	81	20	0	33	46	1.51
38441036--38441084	22	2.3	22	80	20	59	22	2	26	48	1.61
38440700--38441139	239	1.8	238	84	4	600	25	2	26	45	1.68
38441507--38441550	23	2.0	22	86	8	63	54	2	0	43	1.12
38444812--38444902	43	2.1	43	85	2	121	32	12	10	43	1.77
38445187--38445397	43	4.9	43	79	2	142	30	17	26	25	1.97
38445176--38445434	85	3.0	84	77	4	225	28	17	27	26	1.97
38445257--38445438	43	4.3	42	80	9	165	28	17	28	25	1.98
38445189--38445438	128	2.0	128	79	3	279	28	17	27	26	1.98
38461130--38461156	14	1.9	14	100	0	54	18	14	37	29	1.91
38463610--38463682	28	2.5	31	82	8	82	20	9	9	60	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38464734--38464841	51	2.1	52	96	1	200	32	9	24	34	1.87
38469580--38469618	14	2.8	14	84	0	60	23	0	30	46	1.53
38469603--38469686	22	3.9	21	72	6	69	28	1	25	45	1.61
38469673--38469731	21	2.8	20	82	5	64	25	0	33	40	1.56
38473763--38473809	16	2.9	16	87	0	67	42	4	31	21	1.72
38474032--38474073	15	2.9	15	82	10	52	52	0	0	47	1.00
38474138--38474184	16	3.0	16	78	12	53	51	2	0	46	1.13
38474282--38474316	18	2.0	17	88	5	52	54	0	0	45	0.99
38474374--38474475	26	4.0	25	72	13	91	53	0	1	44	1.11
38474021--38474437	120	3.5	120	95	1	730	49	5	2	43	1.37

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144