genome.fa.s11.2.7.7.80.10.50.1000.133.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr6
Parameters: 2 7 7 80 10 50 1000
Length:  44797108

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   

This is table  133  of  144  ( 17221 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41224163--41224243	36	2.2	36	77	2	90	37	14	20	27	1.92
41229978--41230015	20	1.9	20	94	0	67	44	0	2	52	1.14
41250598--41250640	19	2.3	19	84	4	61	48	41	0	9	1.35
41254896--41254931	18	2.0	18	89	10	56	83	8	5	2	0.89
41255442--41255475	6	5.5	6	89	6	50	70	0	14	14	1.17
41255442--41255476	13	2.8	13	86	4	54	71	0	14	14	1.15
41256643--41257241	132	4.5	132	93	0	977	28	18	24	28	1.98
41256686--41257067	88	4.4	85	69	12	252	27	18	25	28	1.98
41256775--41257135	88	4.1	88	68	10	236	28	18	24	29	1.98
41256821--41257192	88	4.2	86	69	8	212	28	18	25	28	1.98
41258395--41258472	14	5.7	13	72	13	59	24	1	5	69	1.16
41259704--41259919	85	2.5	86	82	7	242	28	22	24	24	2.00
41259867--41260406	44	12.3	44	71	10	295	29	18	24	27	1.98
41259874--41260200	175	1.9	174	90	0	528	29	18	24	28	1.98
41259890--41260313	175	2.4	175	84	3	478	28	19	24	28	1.98
41260733--41260775	19	2.3	19	84	4	61	48	41	0	9	1.35
41269987--41270085	48	2.0	49	96	1	182	33	10	10	46	1.71
41286166--41286222	5	11.2	5	86	3	60	75	0	17	7	1.02
41292154--41292408	132	1.9	131	86	0	357	35	21	11	30	1.89
41300407--41300433	13	2.1	13	100	0	54	48	14	0	37	1.45
41301444--41301519	8	9.0	8	79	11	62	36	1	1	60	1.13
41301434--41301515	26	3.2	25	73	13	76	32	2	2	62	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41301443--41301528	18	4.9	17	80	7	93	39	1	1	58	1.13
41301444--41301527	26	3.2	26	75	6	89	39	1	1	58	1.14
41303535--41303618	40	2.1	40	93	0	141	32	5	17	44	1.73
41314331--41314380	24	2.1	24	84	0	64	22	26	6	46	1.74
41314476--41314526	22	2.3	23	77	12	54	19	7	3	68	1.30
41317227--41317260	17	1.9	18	88	5	52	76	2	0	20	0.92
41321749--41321786	14	2.6	15	84	16	53	26	10	15	47	1.78
41323489--41323540	18	2.8	18	80	11	61	73	1	0	25	0.94
41325161--41325471	109	2.9	109	85	2	396	34	18	15	31	1.92
41325592--41325618	4	6.8	4	100	0	54	77	0	0	22	0.76
41325742--41325799	12	4.6	13	68	14	50	55	1	1	41	1.20
41325960--41325990	15	2.1	15	93	0	53	77	0	0	22	0.77
41327542--41327664	45	2.8	44	83	3	158	26	22	19	30	1.98
41327542--41327678	45	3.1	44	78	3	148	26	24	18	30	1.98
41327822--41328231	89	4.6	89	94	0	658	21	24	24	29	1.99
41329427--41329483	17	3.4	16	85	7	78	0	21	1	77	0.86
41333795--41334101	108	2.9	109	88	1	451	33	16	17	31	1.93
41336526--41336617	25	3.6	25	72	17	73	17	26	21	34	1.95
41336570--41336627	24	2.4	25	76	2	64	15	24	25	34	1.95
41338719--41338757	12	3.2	12	92	0	69	7	20	20	51	1.72
41345756--41345780	7	3.6	7	100	0	50	68	0	32	0	0.90
41354508--41354558	22	2.3	22	83	6	68	23	31	0	45	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41354760--41354803	18	2.4	19	88	7	65	50	11	0	38	1.39
41362597--41362666	31	2.3	31	85	5	88	44	11	11	32	1.76
41364381--41364442	30	2.1	29	82	11	72	46	0	4	48	1.23
41365115--41365167	20	2.9	17	81	10	61	28	0	1	69	0.99
41365821--41366555	379	1.9	379	92	1	1240	34	13	19	32	1.91
41366682--41366818	73	1.9	73	93	0	238	32	18	19	29	1.96
41367196--41367361	28	5.7	28	69	18	97	48	0	10	40	1.43
41367291--41367363	30	2.4	30	80	17	89	49	0	9	41	1.35
41367291--41367363	28	2.6	29	86	6	105	49	0	9	41	1.35
41367313--41367375	28	2.3	27	86	10	92	50	3	7	38	1.47
41368923--41369181	138	1.9	138	86	0	374	28	19	20	30	1.97
41369788--41369957	45	3.8	44	79	5	157	28	21	19	30	1.98
41369695--41369954	44	5.9	44	75	5	184	28	22	18	30	1.97
41369788--41369957	89	1.9	89	82	3	207	28	21	19	30	1.98
41369302--41370227	404	2.3	404	84	3	1175	27	21	19	31	1.97
41370114--41370227	44	2.6	44	87	6	151	33	21	19	25	1.97
41370257--41370390	51	2.6	51	80	0	160	25	23	19	31	1.98
41370402--41370503	51	2.0	51	82	0	123	30	18	17	33	1.94
41370275--41370498	123	1.8	123	84	1	306	27	23	16	31	1.96
41370505--41370706	44	4.6	44	67	9	115	27	26	18	27	1.98
41370505--41370757	132	1.9	131	88	0	380	27	26	18	27	1.98
41370307--41371631	437	3.0	437	98	0	2533	26	24	18	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41370839--41370940	51	2.0	51	82	0	123	30	18	17	33	1.94
41370942--41371143	44	4.6	44	68	9	124	25	26	19	27	1.99
41370935--41371194	132	2.0	131	89	0	403	25	25	20	28	1.99
41371355--41371987	132	4.8	132	86	1	856	25	23	20	30	1.99
41376331--41376474	73	2.0	73	95	0	261	34	19	19	26	1.96
41377000--41377033	8	4.2	8	92	0	50	32	0	17	50	1.47
41377000--41377033	12	2.8	12	90	0	59	32	0	17	50	1.47
41377000--41377029	4	7.5	4	92	0	51	30	0	20	50	1.49
41381231--41381257	10	2.7	10	100	0	54	14	40	0	44	1.46
41384018--41384094	14	5.0	15	71	20	52	42	15	9	32	1.78
41384034--41384073	20	2.0	20	90	0	62	50	12	10	27	1.72
41384022--41384088	34	1.9	35	90	3	109	46	13	8	31	1.74
41384057--41384096	14	2.9	14	84	0	53	42	17	7	32	1.77
41384450--41384496	23	2.0	23	92	8	78	40	0	2	57	1.11
41384591--41384618	9	3.1	9	100	0	56	57	10	0	32	1.33
41384561--41384770	68	3.1	68	94	1	370	45	8	5	40	1.57
41384659--41384686	9	3.1	9	100	0	56	57	10	0	32	1.33
41384759--41384800	16	2.6	16	92	0	66	42	7	2	47	1.43
41386371--41386402	11	2.9	11	95	0	55	9	6	15	68	1.36
41386372--41386414	11	3.9	11	90	0	50	11	2	16	69	1.28
41386354--41386413	22	2.7	22	79	5	59	15	5	11	68	1.36
41389969--41390023	26	2.1	26	100	0	110	54	3	23	18	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41390151--41390205	16	3.2	17	84	7	67	58	10	10	20	1.62
41403491--41403538	22	2.2	23	85	7	64	25	10	6	58	1.54
41406724--41406777	19	2.8	19	80	5	56	38	0	3	57	1.17
41406725--41406776	27	1.9	27	84	7	70	38	0	3	57	1.17
41406889--41406942	21	2.5	22	91	5	85	29	31	7	31	1.85
41412208--41412271	18	3.5	17	73	14	56	42	4	18	34	1.71
41413868--41413903	17	2.2	17	85	5	56	58	0	0	41	0.98
41423966--41425455	745	2.0	745	100	0	2980	25	13	24	36	1.92
41425545--41425597	18	2.9	18	82	0	70	15	18	24	41	1.89
41430240--41430281	16	2.6	16	92	0	75	9	23	30	35	1.87
41430269--41430341	22	3.6	22	66	27	70	10	21	28	38	1.88
41430253--41430362	38	2.9	38	83	5	150	13	20	29	36	1.91
41431212--41431325	51	2.2	51	76	6	115	35	13	13	37	1.83
41439238--41439312	22	3.4	22	83	7	98	12	18	29	40	1.87
41439215--41439373	38	4.0	38	72	15	133	13	20	28	37	1.91
41439841--41439930	42	2.1	42	83	4	110	21	26	31	21	1.98
41449152--41449204	18	2.9	18	81	10	54	52	0	9	37	1.34
41451448--41451491	22	2.0	22	100	0	88	27	18	9	45	1.79
41451815--41451860	21	2.2	21	84	7	58	39	6	2	52	1.40
41453570--41453608	20	2.0	21	90	10	64	28	15	10	46	1.78
41458616--41458748	26	5.3	26	76	20	156	45	1	20	32	1.60
41458595--41458748	50	3.1	50	100	0	308	44	1	21	32	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41458595--41458723	24	5.2	24	76	20	140	43	2	22	31	1.66
41464496--41464533	18	2.0	20	90	10	62	57	0	5	36	1.21
41465953--41466001	24	2.1	24	88	3	73	8	2	48	40	1.44
41466485--41466530	20	2.2	20	88	3	65	65	13	2	19	1.37
41467754--41467804	12	4.3	12	78	9	52	17	25	3	52	1.61
41468006--41468300	50	5.8	50	76	8	231	24	28	20	27	1.99
41477062--41477096	17	2.1	17	88	0	52	37	14	2	45	1.59
41478234--41478375	27	5.3	27	70	7	83	35	20	25	19	1.96
41484078--41484108	16	1.9	16	93	0	53	38	0	25	35	1.56
41487651--41487749	22	4.4	23	75	14	89	36	14	18	31	1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144