genome.fa.s11.2.7.7.80.10.50.1000.52.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr6
Parameters: 2 7 7 80 10 50 1000
Length:  44797108

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   

This is table  52  of  144  ( 17221 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16279265--16279340	40	1.9	40	84	10	102	28	26	27	17	1.97
16279420--16279656	41	5.8	41	83	4	264	18	23	23	34	1.96
16279420--16279656	123	1.9	123	90	0	375	18	23	23	34	1.96
16281350--16281402	22	2.4	22	87	6	72	22	0	45	32	1.53
16281347--16281436	29	3.1	28	79	6	90	24	0	41	34	1.55
16281440--16281490	22	2.3	22	83	10	68	21	1	43	33	1.64
16281412--16281483	37	1.9	37	86	5	101	27	1	40	30	1.65
16282114--16282158	8	5.4	8	81	7	54	80	2	2	15	0.92
16282104--16282158	17	3.2	17	75	17	51	76	1	3	18	1.02
16284909--16284968	33	1.9	30	80	12	68	33	8	15	43	1.76
16285100--16285351	40	6.5	38	79	11	226	45	11	1	42	1.47
16285117--16285208	13	6.9	13	74	14	89	45	9	1	43	1.44
16285245--16285335	22	4.6	21	72	20	72	43	13	0	42	1.43
16285249--16285339	18	4.9	18	77	15	96	46	12	0	41	1.41
16285249--16285310	17	3.6	17	84	4	70	46	12	0	40	1.42
16285341--16285369	2	14.5	2	100	0	58	48	0	0	51	1.00
16285628--16285847	9	25.8	9	69	15	146	45	21	2	30	1.64
16285635--16285733	20	5.1	19	69	27	73	50	19	1	29	1.54
16285634--16285841	25	8.9	23	72	18	137	46	21	1	30	1.62
16285680--16285847	34	4.7	34	73	15	133	45	21	1	30	1.62
16285654--16285842	59	3.2	59	79	7	233	46	21	2	30	1.63
16291291--16291359	21	3.3	21	83	0	84	36	20	39	4	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16291807--16292015	42	5.0	42	86	8	257	25	22	20	31	1.98
16299526--16299555	4	7.8	4	92	7	53	23	0	0	76	0.78
16299758--16299796	19	2.2	18	86	9	53	76	2	5	15	1.06
16306100--16306143	13	3.7	13	74	22	51	20	6	4	68	1.31
16306100--16306142	22	1.9	23	90	4	70	18	6	4	69	1.29
16312221--16312265	20	2.3	20	84	3	65	35	8	4	51	1.54
16312229--16312266	19	2.0	19	85	10	51	34	10	7	47	1.67
16312553--16312595	9	4.9	9	80	5	52	86	9	2	2	0.76
16312552--16312593	17	2.5	17	88	0	57	85	9	2	2	0.77
16312563--16312592	15	1.9	16	93	6	53	86	6	3	3	0.77
16312749--16312820	10	6.6	10	73	17	54	69	0	30	0	0.89
16312761--16312915	38	4.1	38	80	11	160	65	0	32	1	1.05
16312761--16312893	10	13.7	10	69	17	68	67	0	30	1	1.05
16312840--16312925	32	2.6	33	82	14	90	69	1	27	1	1.03
16312761--16312931	76	2.3	75	81	10	179	66	0	30	1	1.06
16313608--16313659	19	2.7	19	87	0	68	25	0	7	67	1.17
16313696--16313765	28	2.5	28	93	4	115	41	10	0	48	1.36
16318860--16318967	44	2.4	44	87	3	144	29	23	13	33	1.93
16319307--16319364	30	1.9	30	89	0	89	31	24	3	41	1.71
16319935--16319968	9	3.9	9	84	7	52	2	17	0	79	0.86
16319935--16319968	17	2.0	17	94	0	59	2	17	0	79	0.86
16319977--16320049	5	14.6	5	76	20	64	54	4	1	39	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16319978--16320020	19	2.3	19	92	8	70	55	0	2	41	1.12
16319984--16320048	24	2.7	24	80	9	69	56	4	1	36	1.29
16321932--16321959	13	2.2	13	100	0	56	46	25	7	21	1.76
16324358--16324465	44	2.4	44	87	3	144	29	23	13	33	1.93
16325343--16325377	9	3.9	9	84	0	52	2	17	0	80	0.84
16325343--16325382	18	2.2	19	90	4	64	2	15	2	80	0.93
16325386--16325458	5	14.6	5	76	20	64	54	4	1	39	1.28
16325387--16325429	19	2.3	19	92	8	70	55	0	2	41	1.12
16325393--16325457	24	2.7	24	80	9	69	56	4	1	36	1.29
16330553--16330801	50	4.8	50	85	4	284	20	29	24	26	1.99
16330552--16330801	100	2.4	104	88	6	357	20	29	24	26	1.99
16330896--16330927	13	2.5	13	94	0	55	56	12	0	31	1.37
16331139--16331196	30	1.9	30	89	0	89	31	24	3	41	1.71
16331766--16331799	9	3.9	9	84	7	52	2	17	0	79	0.86
16331766--16331799	17	2.0	17	94	0	59	2	17	0	79	0.86
16331808--16331879	5	14.4	5	75	20	62	55	4	1	38	1.28
16331809--16331851	19	2.3	19	92	8	70	55	0	2	41	1.12
16331815--16331880	24	2.7	24	81	9	71	57	4	1	36	1.28
16336917--16337024	44	2.4	44	87	3	144	29	23	13	33	1.93
16345893--16345975	30	2.6	33	86	7	109	49	6	6	38	1.52
16345894--16345993	30	3.2	30	78	17	105	49	5	6	40	1.49
16351295--16351330	19	1.9	19	88	5	56	38	2	22	36	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16379802--16379875	36	2.0	36	92	2	121	36	33	13	16	1.88
16385161--16385203	22	2.0	22	90	0	68	9	13	27	48	1.73
16385275--16385666	42	9.4	42	82	7	410	33	21	20	24	1.97
16385275--16385576	123	2.4	121	86	6	401	34	22	19	22	1.97
16385406--16385559	81	1.9	78	88	5	229	40	22	20	16	1.91
16385280--16385666	208	1.9	206	84	5	530	34	21	20	23	1.97
16386084--16386123	12	3.3	12	92	0	53	2	37	17	42	1.63
16386108--16386176	21	3.3	21	83	0	84	2	40	20	36	1.67
16391677--16391730	7	7.1	7	87	8	63	27	1	16	53	1.53
16391753--16392133	27	13.4	27	84	10	440	37	2	12	48	1.54
16391774--16392133	117	3.2	117	92	3	585	36	2	11	48	1.53
16392059--16392148	9	10.0	9	73	13	69	34	4	6	54	1.47
16392724--16392760	13	2.9	13	88	4	58	35	8	2	54	1.44
16395403--16395441	21	1.9	20	89	5	60	43	35	0	20	1.52
16405915--16406154	125	1.9	125	88	3	367	33	16	16	33	1.91
16434936--16434998	31	2.0	31	96	0	117	12	3	33	50	1.56
16437233--16437270	20	1.9	20	84	10	51	10	44	0	44	1.38
16438680--16439277	231	2.7	222	83	6	717	43	11	28	16	1.82
16442163--16442207	22	2.0	22	100	0	90	55	13	22	8	1.65
16449529--16449573	21	2.1	22	84	12	58	66	8	11	13	1.44
16452374--16452647	35	8.1	34	84	6	317	40	17	22	18	1.91
16452374--16452607	67	3.5	66	90	3	328	40	17	23	18	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16452384--16452647	102	2.6	102	91	1	408	39	17	23	18	1.92
16452384--16452647	67	3.9	65	88	5	305	39	17	23	18	1.92
16465517--16465563	20	2.3	20	75	13	51	14	10	2	72	1.21
16465583--16465627	9	5.0	9	84	10	56	22	0	4	73	1.01
16465783--16465847	22	3.0	21	77	16	60	20	1	1	76	0.94
16465783--16465838	8	6.3	9	78	13	55	17	1	1	78	0.92
16465786--16465834	18	2.7	18	90	6	73	16	2	2	79	0.92
16465876--16465975	21	4.8	21	75	16	100	39	0	1	60	1.04
16465858--16465975	42	2.8	43	78	15	122	39	0	3	56	1.16
16465931--16465986	20	2.8	20	81	10	69	46	0	0	53	1.00
16466155--16466182	13	2.2	13	100	0	56	46	0	0	53	1.00
16466155--16466189	11	3.0	11	91	8	52	45	0	0	54	0.99
16466157--16466236	29	2.7	30	81	13	94	46	0	0	53	1.00
16465997--16466241	116	2.1	114	81	7	280	38	3	3	54	1.34
16469088--16469239	71	2.1	71	91	3	243	40	3	3	51	1.39
16469149--16469188	20	2.0	20	85	0	53	52	0	0	47	1.00
16469302--16469386	40	2.1	41	86	2	118	52	4	8	34	1.52
16469877--16469933	20	3.0	20	79	10	73	42	5	0	52	1.24
16470199--16470257	22	2.7	23	75	19	72	62	3	0	33	1.12
16470307--16470375	23	3.1	22	84	10	79	53	1	0	44	1.09
16470294--16470373	22	3.4	23	81	13	92	53	1	0	45	1.08
16470337--16470402	32	2.0	33	88	2	98	57	1	1	39	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16470446--16470490	9	5.0	9	84	10	56	73	4	0	22	1.01
16470459--16470536	8	9.2	8	75	8	66	78	2	2	16	0.98
16470496--16470536	17	2.4	17	87	0	55	80	2	2	14	0.92
16470487--16470533	25	1.9	25	91	4	78	76	2	4	17	1.04
16470513--16470580	20	3.5	20	70	11	61	77	1	8	11	1.04
16471553--16471614	30	2.1	30	84	6	81	43	0	1	54	1.09
16471586--16471624	21	1.9	21	89	5	62	51	0	2	46	1.14
16480820--16480867	24	2.0	24	100	0	96	16	12	16	54	1.72
16481172--16481224	21	2.5	21	70	11	54	33	22	24	18	1.97
16488459--16488512	16	3.4	16	84	0	72	38	1	24	35	1.66

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144