genome.fa.s11.2.7.7.80.10.50.1000.48.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr6
Parameters: 2 7 7 80 10 50 1000
Length:  44797108

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   

This is table  48  of  144  ( 17221 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15160819--15160887	21	3.2	21	78	10	59	33	15	5	44	1.71
15160836--15160889	22	2.5	21	79	8	63	33	20	5	40	1.76
15160901--15160962	29	2.1	30	88	5	92	67	3	1	27	1.15
15161693--15161760	31	2.2	31	81	5	84	32	13	16	38	1.87
15171223--15171286	33	1.9	33	100	0	128	35	14	18	31	1.91
15179411--15179594	94	1.9	96	91	3	300	33	10	8	48	1.67
15181220--15181300	27	3.0	27	87	0	108	39	27	18	14	1.90
15184305--15184355	27	1.9	26	88	4	75	64	7	0	27	1.21
15185595--15185637	21	2.0	22	86	4	61	16	6	34	41	1.75
15197321--15197435	30	3.9	29	80	12	126	38	1	24	35	1.66
15197280--15197436	59	2.7	58	79	10	176	36	1	26	35	1.68
15197766--15199209	75	18.8	76	83	8	1578	37	20	15	26	1.93
15197766--15199209	306	4.7	305	87	5	1852	37	20	15	26	1.93
15200064--15200103	9	4.6	9	87	6	64	0	0	10	90	0.47
15200063--15200103	15	2.9	15	89	7	59	0	0	9	90	0.46
15200063--15200103	17	2.4	16	88	11	64	0	0	9	90	0.46
15211201--15211248	19	2.5	20	86	3	62	37	6	16	39	1.74
15211267--15211400	18	7.7	18	71	19	97	44	9	12	33	1.75
15211265--15211428	19	9.4	18	71	13	121	43	9	13	33	1.75
15211425--15211456	17	1.9	16	93	6	55	34	6	3	56	1.40
15211426--15211456	16	1.9	16	93	0	53	35	6	3	54	1.42
15211267--15211492	52	4.2	54	80	8	198	42	9	12	35	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15211772--15211805	17	1.9	17	88	5	50	70	2	0	26	1.01
15211849--15211887	19	2.1	19	85	0	51	58	5	7	28	1.47
15212097--15212149	15	3.4	15	71	19	54	7	24	41	26	1.81
15212088--15212156	32	2.2	32	100	0	138	5	26	39	28	1.79
15212242--15212284	20	2.1	20	83	12	52	0	23	0	76	0.78
15212240--15212289	24	2.1	24	88	7	75	0	24	0	76	0.80
15212245--15212299	24	2.3	23	78	9	56	3	25	0	70	1.03
15212390--15212437	21	2.3	20	80	16	53	0	31	0	68	0.90
15212392--15212434	14	3.0	14	86	10	52	0	34	0	65	0.93
15212414--15212448	18	1.9	18	88	0	52	0	34	0	65	0.93
15213035--15213165	30	4.4	30	79	10	135	40	3	20	35	1.68
15213035--15213164	59	2.2	59	84	6	165	40	3	20	36	1.68
15216003--15216047	23	1.9	24	81	4	56	26	8	15	48	1.74
15224867--15225010	59	2.4	59	83	4	175	43	6	6	43	1.56
15225346--15225407	31	2.0	31	83	0	79	11	12	8	67	1.41
15225760--15225793	11	3.2	11	91	4	52	26	32	0	41	1.56
15227891--15228204	115	2.7	115	97	0	592	32	20	15	31	1.94
15228938--15228970	10	3.3	10	87	12	50	48	27	0	24	1.51
15229084--15229118	17	2.1	17	88	0	52	5	40	34	20	1.76
15231377--15231410	4	9.0	4	93	6	54	73	0	0	26	0.83
15231713--15231777	32	2.1	32	97	2	123	47	12	9	30	1.72
15236752--15236812	16	3.4	18	76	15	63	47	0	26	26	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15236882--15236907	7	3.7	7	100	0	52	15	0	69	15	1.20
15236910--15236968	30	2.0	30	90	9	95	38	0	40	20	1.53
15237181--15237217	9	4.1	9	89	0	56	29	8	13	48	1.71
15237176--15237221	18	2.8	16	78	15	58	30	8	15	45	1.76
15243490--15243574	36	2.4	37	75	16	97	38	12	1	47	1.50
15245146--15245199	24	2.5	21	85	11	65	38	5	0	55	1.23
15245464--15245566	52	2.0	52	94	0	179	19	7	6	66	1.40
15250898--15251591	369	1.9	370	95	0	1257	40	12	18	28	1.87
15251595--15251619	12	2.1	12	100	0	50	16	32	8	44	1.76
15251709--15251825	59	2.0	58	96	0	207	23	20	27	27	1.99
15255826--15256006	44	4.1	44	69	16	131	31	20	21	26	1.98
15255779--15256079	132	2.3	132	86	0	413	32	19	21	25	1.98
15256117--15256276	50	3.2	50	73	0	167	33	21	19	25	1.97
15256084--15256279	100	1.9	102	89	2	306	32	21	20	25	1.98
15257782--15258404	50	12.5	49	70	4	422	30	23	21	24	1.99
15257778--15258404	100	6.3	100	90	0	925	30	23	21	24	1.99
15260168--15260192	3	8.3	3	100	0	50	32	0	0	68	0.90
15260557--15260589	17	1.9	17	93	0	57	33	3	9	54	1.47
15260650--15260697	21	2.3	21	96	0	87	37	12	6	43	1.68
15260736--15260808	35	2.1	35	82	10	87	34	8	4	53	1.50
15265262--15265360	51	1.9	51	93	0	171	50	19	5	25	1.67
15271237--15271263	8	3.4	8	100	0	54	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15271319--15271366	19	2.5	19	80	12	53	43	4	0	52	1.20
15271527--15271551	13	1.9	13	100	0	50	80	4	0	16	0.87
15273913--15273970	22	2.6	22	84	7	73	43	17	3	36	1.66
15273926--15274023	19	4.8	19	83	9	115	39	16	7	36	1.76
15273960--15274022	21	3.1	21	88	9	103	39	14	7	38	1.75
15274706--15274744	20	1.9	20	84	5	51	23	5	5	66	1.32
15282685--15282737	18	2.8	19	80	5	54	67	3	1	26	1.17
15296341--15296485	57	2.5	58	77	3	141	24	17	9	47	1.78
15296896--15296928	9	3.7	9	88	11	50	63	0	3	33	1.10
15296901--15296948	24	1.9	26	84	16	66	60	2	8	29	1.37
15298989--15299057	16	4.2	16	92	3	120	24	1	37	36	1.65
15298989--15299057	33	2.1	32	94	2	120	24	1	37	36	1.65
15299038--15299128	45	2.0	45	85	2	121	27	6	28	37	1.82
15299293--15299327	18	2.0	17	88	5	52	54	0	0	45	0.99
15299385--15299475	26	3.4	26	73	11	94	51	2	1	45	1.20
15315215--15315370	64	2.4	64	77	6	145	27	25	19	28	1.98
15317196--15317239	15	2.9	15	79	0	52	31	20	20	27	1.97
15321041--15321107	28	2.4	28	85	5	82	59	8	0	31	1.28
15321050--15321117	28	2.6	25	73	13	73	63	8	0	27	1.24
15321175--15321252	27	2.9	27	88	0	111	21	21	37	19	1.95
15321179--15321268	27	3.3	27	82	3	83	22	23	36	17	1.95
15321682--15321787	28	3.8	28	77	5	108	29	2	10	57	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15321682--15321837	83	1.9	82	80	10	183	32	5	8	53	1.56
15321794--15321870	40	2.0	37	82	9	93	37	3	9	49	1.53
15325307--15325359	12	4.4	12	79	9	63	1	24	43	30	1.65
15327589--15327618	15	1.9	16	93	6	53	26	0	0	73	0.84
15328195--15328391	5	40.6	5	72	14	105	0	32	0	67	0.95
15328138--15328360	41	5.3	41	76	13	154	0	30	0	69	0.93
15328167--15328316	61	2.4	62	94	2	257	0	30	0	69	0.89
15328167--15328388	10	21.5	10	70	17	86	0	31	0	68	0.93
15328253--15328356	40	2.5	42	90	4	158	0	33	0	65	0.99
15328171--15328389	102	2.2	101	87	8	320	0	31	0	68	0.93
15328204--15328404	61	3.3	59	84	11	198	0	33	0	66	0.96
15339594--15340488	76	11.8	76	99	0	1727	33	27	16	22	1.95
15340314--15340667	179	2.0	179	90	1	557	33	26	17	22	1.96
15340390--15340591	103	2.0	103	91	2	325	32	27	17	22	1.96
15340535--15340663	33	3.6	33	74	22	125	33	24	20	21	1.97
15340493--15340669	76	2.3	76	91	0	293	32	25	18	23	1.97
15341341--15341495	78	2.0	78	98	0	301	39	18	21	21	1.93
15341811--15341843	11	2.8	12	90	9	50	36	6	12	45	1.66
15347797--15348794	33	28.5	33	65	28	248	33	27	16	22	1.96
15347826--15348040	43	5.5	43	71	24	222	33	27	16	22	1.95
15347789--15348077	76	3.8	76	98	0	542	32	27	17	22	1.96
15347979--15348901	103	9.0	103	97	0	1679	32	26	17	22	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15347827--15348281	179	2.5	186	74	18	494	33	27	16	22	1.95
15349964--15349997	11	2.8	12	91	8	52	35	8	11	44	1.72
15361070--15361103	17	2.0	17	94	0	59	44	50	0	5	1.26
15363980--15364013	17	2.0	17	94	0	59	44	50	0	5	1.26
15377235--15377304	35	2.0	35	94	0	122	25	24	22	27	2.00
15383794--15383903	33	3.3	33	82	11	145	32	8	17	41	1.79
15383898--15383925	12	2.3	12	100	0	56	21	0	21	57	1.41
15383850--15384102	63	4.0	63	99	0	497	26	6	19	47	1.73
15383961--15383988	12	2.3	12	100	0	56	21	0	21	57	1.41
15384024--15384051	12	2.3	12	100	0	56	21	0	21	57	1.41

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144