genome.fa.s11.2.7.7.80.10.50.1000.18.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr6
Parameters: 2 7 7 80 10 50 1000
Length:  44797108

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   

This is table  18  of  144  ( 17221 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5088702--5088759	22	2.5	23	86	8	75	48	0	1	50	1.11
5094159--5094206	24	2.0	24	84	8	62	37	6	8	47	1.59
5110735--5110810	19	4.2	16	71	22	53	63	3	2	30	1.26
5110760--5110810	18	2.9	17	78	16	50	66	3	1	27	1.20
5116196--5116250	19	3.1	18	80	19	55	30	3	0	65	1.10
5117010--5117047	17	2.2	18	86	9	53	39	0	0	60	0.97
5120536--5120634	51	1.9	51	97	0	189	39	13	19	28	1.89
5121520--5121559	14	2.9	14	84	0	53	32	7	17	42	1.77
5121543--5121582	20	2.0	20	90	0	62	27	10	12	50	1.72
5121528--5121594	34	1.9	35	90	3	109	31	8	13	46	1.74
5121522--5121598	14	5.0	15	71	20	52	32	9	15	42	1.78
5123186--5123211	12	2.2	12	100	0	52	46	15	7	30	1.74
5125775--5125825	18	2.8	18	75	0	66	39	3	43	13	1.63
5130303--5130336	17	1.9	18	88	5	52	38	2	2	55	1.30
5138446--5138470	7	3.6	7	100	0	50	88	0	0	12	0.53
5148521--5148769	77	3.2	77	78	1	221	40	17	17	24	1.90
5149825--5149882	23	2.6	22	81	10	73	15	13	17	53	1.73
5151535--5151559	11	2.3	11	100	0	50	64	16	0	20	1.30
5159624--5159676	23	2.4	22	90	6	81	18	9	11	60	1.57
5175490--5175564	39	1.9	39	91	0	123	21	16	26	36	1.94
5181136--5181186	3	16.7	3	78	8	50	60	1	3	33	1.26
5188607--5188741	41	3.4	40	81	5	125	25	17	24	33	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5199555--5199698	74	1.9	75	94	1	254	50	5	15	28	1.67
5203839--5203871	15	2.2	15	100	0	66	24	24	15	36	1.93
5204567--5204597	15	2.1	15	100	0	62	29	19	19	32	1.96
5216406--5216436	15	2.1	15	100	0	62	38	25	12	22	1.90
5216445--5216486	20	2.1	20	90	0	66	30	16	11	40	1.85
5219854--5219888	18	1.9	18	88	0	52	20	20	28	31	1.97
5221131--5221161	15	2.1	15	93	0	53	38	22	12	25	1.90
5221170--5221211	20	2.1	20	90	0	66	30	16	11	40	1.85
5228612--5228667	3	18.3	3	80	14	62	62	1	33	1	1.16
5228605--5228649	12	3.8	12	87	0	54	62	0	37	0	0.96
5234198--5234281	44	1.9	44	95	0	150	40	20	3	35	1.70
5235476--5235960	87	5.6	87	72	16	355	37	6	12	43	1.68
5235689--5235960	89	2.9	90	82	8	325	36	5	12	44	1.67
5243654--5243686	14	2.3	15	89	5	50	81	6	3	9	0.95
5243846--5243961	10	11.3	10	64	18	51	68	0	31	0	0.89
5243849--5243957	30	3.5	30	75	17	98	66	0	33	0	0.92
5243833--5243935	38	2.8	37	81	11	138	68	0	31	0	0.89
5243842--5243963	38	3.4	36	74	21	114	69	0	30	0	0.89
5246208--5246238	12	2.6	12	94	0	53	32	45	22	0	1.53
5251959--5252020	22	2.7	22	72	22	56	69	1	19	9	1.25
5271707--5271766	20	3.0	20	82	9	68	43	1	0	55	1.10
5278286--5278364	38	2.1	38	100	0	158	24	15	21	39	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5281735--5281844	54	2.0	54	100	0	220	53	12	1	31	1.49
5281991--5282024	6	5.7	6	100	0	68	82	0	0	17	0.67
5286078--5286232	69	2.2	69	85	6	197	31	16	25	26	1.96
5293408--5293695	49	5.7	50	80	2	220	24	26	20	28	1.99
5303707--5303753	14	3.4	14	77	14	53	76	2	2	19	0.99
5303742--5303771	10	3.0	10	95	0	51	70	0	6	23	1.11
5305396--5305428	17	1.9	17	100	0	66	24	0	18	57	1.40
5306650--5306788	46	3.0	46	90	0	224	33	9	26	30	1.88
5312381--5312414	13	2.6	13	90	9	52	44	0	2	52	1.16
5313871--5313957	24	3.6	24	73	17	72	24	24	21	29	1.99
5316470--5316524	28	2.0	29	89	7	87	49	0	1	49	1.11
5335210--5335371	91	1.8	86	86	6	234	34	6	12	46	1.68
5342790--5342963	25	7.0	25	71	13	74	18	27	20	33	1.96
5342843--5342963	24	5.0	23	73	14	73	16	28	22	33	1.95
5345243--5345331	28	3.2	28	87	1	126	31	22	21	24	1.98
5345446--5345516	26	2.8	25	82	6	90	40	21	19	18	1.91
5345705--5346141	27	16.1	27	81	5	391	19	15	19	45	1.86
5345724--5346142	81	5.2	81	82	2	455	19	15	20	45	1.86
5348768--5348836	30	2.3	30	92	0	111	36	20	5	37	1.77
5348828--5348897	29	2.4	29	83	11	81	34	22	5	37	1.78
5348766--5348918	30	5.2	30	73	14	95	33	22	5	37	1.79
5349448--5349523	16	4.9	16	78	16	79	59	0	39	1	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5349441--5349524	11	8.0	11	68	15	52	60	0	38	1	1.04
5349448--5349560	49	2.4	46	78	14	115	61	0	37	0	1.02
5349496--5349534	19	2.0	21	85	10	55	64	0	35	0	0.94
5349640--5349698	10	5.9	10	75	11	50	72	0	25	1	0.93
5349644--5349702	17	3.4	17	78	4	64	72	0	25	1	0.93
5349864--5349899	19	1.9	18	88	5	54	25	2	2	69	1.15
5350541--5350603	18	3.5	17	75	16	65	36	14	7	41	1.75
5350530--5350619	36	2.4	36	84	12	121	34	14	10	41	1.79
5351306--5351476	35	4.9	35	77	12	174	44	11	12	31	1.78
5351339--5351395	18	3.2	18	85	2	71	43	10	8	36	1.70
5351304--5351476	89	2.0	88	84	3	231	43	11	12	32	1.78
5351509--5351613	52	2.1	50	82	5	122	39	11	17	32	1.85
5351541--5351716	93	1.9	92	83	3	228	43	11	13	30	1.80
5351633--5351796	35	4.5	35	74	12	125	46	13	10	28	1.77
5351305--5351796	17	28.0	18	66	20	179	45	11	12	30	1.78
5351639--5351840	76	2.6	75	89	10	295	47	14	11	26	1.78
5351752--5351796	18	2.8	15	86	10	54	57	13	8	20	1.62
5351879--5351928	18	2.8	17	85	8	73	34	14	14	38	1.85
5351878--5351928	17	2.9	16	83	16	66	35	13	13	37	1.85
5351879--5351954	36	2.1	35	85	2	98	35	10	14	39	1.81
5351879--5351937	19	3.2	18	83	11	68	32	11	15	40	1.83
5352897--5352948	5	11.0	5	80	12	65	0	38	0	61	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5352920--5352999	36	2.3	35	80	2	88	1	40	1	57	1.15
5353509--5353692	29	6.3	30	77	12	143	39	4	24	32	1.75
5353533--5353692	29	5.4	29	80	8	162	39	4	24	31	1.75
5353533--5353691	59	2.7	58	82	7	205	39	4	24	31	1.75
5354054--5354196	76	1.9	76	85	5	198	32	20	16	30	1.95
5354122--5354285	88	1.9	88	92	2	276	32	21	14	31	1.93
5354226--5355327	79	13.8	79	91	5	1645	36	19	16	27	1.93
5356198--5356260	7	8.7	7	83	13	65	1	3	7	87	0.71
5356198--5356261	18	3.3	20	76	6	62	1	3	7	87	0.71
5356197--5356261	23	2.8	23	84	9	87	3	3	7	86	0.78
5356198--5356261	13	5.0	13	80	16	71	1	3	7	87	0.71
5356199--5356274	22	3.4	21	81	13	80	2	5	7	84	0.86
5356198--5356261	1	64.0	1	74	0	56	1	3	7	87	0.71
5359792--5359820	10	3.0	10	95	5	51	41	0	27	31	1.56
5367325--5367683	17	20.8	17	66	18	102	45	10	13	30	1.77
5367307--5367443	18	7.9	17	74	13	86	45	10	11	32	1.74
5367507--5367682	93	1.9	92	83	3	228	43	11	13	31	1.81
5367307--5367686	35	11.0	35	67	17	136	45	10	12	31	1.77
5367764--5367799	18	1.9	19	88	5	56	36	13	13	36	1.85
5367798--5367849	17	2.9	18	72	16	63	36	11	13	38	1.81
5367798--5367848	16	3.0	16	77	11	57	37	11	13	37	1.82
5367842--5367969	60	2.1	61	85	4	197	38	7	14	40	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5368386--5368420	18	2.0	17	88	5	52	74	2	2	20	1.08
5368697--5368731	10	3.5	10	92	0	61	0	22	0	77	0.78
5368698--5368742	20	2.3	19	81	11	54	0	28	0	71	0.87
5368853--5368904	5	11.0	5	80	12	65	0	38	0	61	0.96
5369449--5369644	29	6.7	30	77	11	149	39	5	25	30	1.77
5369485--5369644	29	5.4	29	80	8	162	39	4	24	31	1.75
5369485--5369643	59	2.7	58	82	7	205	39	4	24	31	1.75
5371320--5371556	79	3.0	79	99	0	465	11	17	21	48	1.79
5394970--5395147	56	3.2	56	100	0	356	24	11	25	37	1.90
5405273--5405335	30	2.1	30	96	0	117	23	3	15	57	1.53

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144