genome.fa.s11.2.7.7.80.10.50.1000.129.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr6
Parameters: 2 7 7 80 10 50 1000
Length:  44797108

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   

This is table  129  of  144  ( 17221 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40162812--40163029	76	2.8	76	83	4	265	31	23	20	24	1.98
40163004--40163055	26	2.0	26	96	0	95	28	30	21	19	1.97
40168296--40168333	3	12.7	3	100	0	76	68	31	0	0	0.90
40168468--40168496	10	2.7	11	89	10	51	0	27	0	72	0.85
40168587--40168669	27	3.1	27	83	0	103	18	26	27	27	1.98
40168726--40168787	28	2.2	28	85	5	81	50	3	6	40	1.44
40170999--40171057	18	3.3	17	70	11	55	33	1	1	62	1.15
40173941--40174010	26	2.7	25	78	6	86	15	22	20	41	1.90
40174038--40174179	25	5.8	25	73	11	89	20	27	19	32	1.97
40176676--40177174	249	2.0	248	96	0	926	29	11	23	36	1.89
40180373--40180406	17	2.0	17	88	0	50	47	11	14	26	1.79
40181555--40181604	26	2.0	25	92	4	82	16	22	24	38	1.93
40184604--40184926	171	1.9	171	90	1	522	25	11	22	39	1.88
40186468--40186515	23	2.1	23	84	7	62	22	2	0	75	0.91
40187107--40187143	16	2.1	19	85	14	53	24	8	0	67	1.17
40187368--40187417	20	2.7	18	81	15	57	54	4	0	42	1.19
40190482--40190531	17	2.7	20	78	18	70	10	0	44	46	1.37
40195121--40195170	17	2.7	20	78	18	70	10	0	44	46	1.37
40195731--40195763	3	11.0	3	100	0	66	33	0	33	33	1.58
40200274--40200325	19	2.8	19	88	8	72	53	5	0	40	1.25
40200302--40200351	27	1.9	27	84	8	68	56	2	0	42	1.11
40207258--40207296	20	2.0	20	94	0	69	43	5	2	48	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40207436--40207495	21	3.0	20	75	4	66	40	10	11	38	1.75
40221580--40221738	78	2.0	78	86	4	223	26	20	16	36	1.94
40227005--40227128	45	2.8	45	83	3	153	26	13	16	43	1.85
40229522--40229685	63	2.6	61	81	5	168	21	21	29	27	1.99
40231407--40231523	45	2.6	45	93	0	198	43	16	17	22	1.88
40231623--40231694	13	5.5	13	81	6	83	43	1	19	36	1.60
40231614--40231689	39	1.9	40	81	2	91	42	1	19	36	1.60
40231623--40231745	26	4.7	26	73	13	74	42	3	17	36	1.66
40231674--40231736	27	2.4	26	79	10	65	46	4	14	34	1.66
40235753--40235788	15	2.4	15	95	0	63	27	16	19	36	1.93
40239815--40239866	27	1.9	27	96	0	95	30	23	7	38	1.83
40240763--40240889	40	3.2	40	81	0	146	13	16	27	42	1.85
40253391--40253424	8	4.1	8	88	3	50	35	2	0	61	1.11
40255114--40255140	13	2.1	13	100	0	54	25	7	14	51	1.68
40255739--40255777	11	3.5	11	82	0	51	61	2	10	25	1.41
40261391--40261740	153	2.3	150	79	5	373	30	24	14	30	1.95
40261392--40261739	51	6.9	51	77	5	305	29	24	14	30	1.95
40261392--40261740	102	3.4	102	85	2	445	30	24	14	30	1.95
40264301--40264409	47	2.3	48	80	3	121	33	23	14	28	1.94
40266278--40266633	51	7.0	50	73	3	307	29	28	12	28	1.94
40266278--40266628	102	3.4	102	99	0	693	29	28	13	28	1.94
40267834--40267881	23	2.1	23	88	0	69	16	31	16	35	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40268123--40268180	28	2.0	31	83	10	77	43	3	3	50	1.36
40269278--40269323	23	2.0	24	83	12	60	39	6	2	52	1.40
40269766--40269799	11	3.1	11	95	0	59	23	64	2	8	1.36
40273287--40273343	28	2.1	26	83	9	69	49	3	0	47	1.18
40273818--40273864	24	2.0	23	83	4	58	46	2	0	51	1.13
40274867--40274934	29	2.3	30	85	5	86	45	13	4	36	1.63
40276119--40276206	44	2.0	44	90	0	140	44	17	20	18	1.87
40281557--40281605	25	2.0	25	84	4	64	48	2	0	48	1.12
40283850--40283921	37	1.9	37	94	0	126	36	18	12	33	1.88
40286830--40286944	22	5.4	21	69	19	78	54	1	4	39	1.30
40286892--40286947	18	2.8	20	80	17	71	58	3	0	37	1.15
40287065--40287095	3	10.0	3	93	6	53	64	0	3	32	1.09
40287145--40287179	3	11.7	3	93	0	61	68	28	0	2	1.04
40288959--40289072	44	2.6	44	78	0	120	22	25	21	30	1.99
40289872--40290031	44	3.6	44	84	5	155	27	27	15	29	1.96
40289822--40290146	175	1.9	175	91	0	533	25	24	18	31	1.98
40289895--40290124	44	5.2	44	76	7	207	25	24	20	30	1.99
40290146--40290453	89	3.5	89	83	2	386	24	22	22	30	1.99
40293481--40293514	12	2.8	12	81	0	50	11	23	20	44	1.84
40296155--40296223	35	2.0	35	85	5	95	57	1	10	30	1.40
40296324--40296380	18	2.8	20	75	17	64	56	3	3	36	1.34
40296498--40296573	3	25.0	3	94	2	134	64	0	1	34	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40299558--40299681	41	3.0	41	93	0	212	23	28	20	28	1.99
40305158--40305343	41	4.6	40	90	6	284	21	29	22	26	1.99
40306670--40306715	25	1.9	23	83	16	58	39	13	2	45	1.55
40311877--40312684	50	16.2	50	68	8	365	25	20	21	32	1.97
40311877--40312733	100	8.6	100	87	2	1037	24	20	21	32	1.97
40312810--40313012	44	4.7	44	75	4	171	30	21	17	30	1.96
40312727--40313405	234	2.9	233	92	0	1133	28	21	17	32	1.96
40313044--40313244	44	4.7	43	75	7	167	28	20	19	30	1.97
40314464--40314505	21	2.0	21	90	9	68	14	14	0	71	1.15
40321985--40322070	34	2.5	34	88	0	127	38	8	16	37	1.78
40326386--40326505	57	2.1	58	86	6	165	26	17	9	46	1.78
40340180--40340223	23	2.0	23	95	4	81	47	0	0	52	1.00
40340132--40340215	39	2.1	40	80	6	91	33	4	1	60	1.25
40345566--40345608	21	2.1	20	83	12	52	37	16	2	44	1.60
40347639--40347766	38	3.3	38	81	5	141	46	10	7	35	1.67
40353066--40353108	21	2.0	21	95	0	77	34	9	25	30	1.87
40354364--40354446	39	2.1	38	84	4	103	46	12	10	30	1.75
40354364--40354463	40	2.6	38	79	6	103	45	13	11	31	1.78
40359426--40359505	39	2.1	39	100	0	160	51	8	7	32	1.61
40359899--40359941	21	2.0	21	100	0	86	60	0	6	32	1.23
40360328--40360389	30	2.1	30	87	0	88	41	0	38	19	1.51
40360512--40360542	9	3.4	9	90	0	53	38	22	12	25	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40360853--40360900	24	2.0	25	83	4	62	45	2	2	50	1.25
40360939--40360990	23	2.3	23	77	12	54	42	5	1	50	1.37
40360960--40360988	11	2.5	12	94	5	51	37	3	0	58	1.15
40369543--40369581	20	2.0	20	85	10	53	41	15	7	35	1.76
40372713--40372753	22	1.9	22	90	5	66	68	0	2	29	1.03
40379105--40379153	20	2.6	19	84	15	59	22	32	0	44	1.53
40379122--40379165	20	2.2	20	84	8	54	20	36	0	43	1.52
40380530--40380558	11	2.5	12	94	5	51	37	3	0	58	1.15
40389225--40389250	6	4.3	6	100	0	52	19	0	0	80	0.71
40389480--40389580	21	4.6	21	69	15	62	28	2	2	65	1.22
40389481--40389564	44	1.9	43	82	2	105	26	3	3	66	1.24
40389482--40389618	64	2.2	57	80	12	130	26	4	2	67	1.21
40393512--40393578	28	2.4	28	92	2	107	19	31	7	41	1.79
40398491--40398565	30	2.4	33	80	10	95	44	1	0	54	1.08
40403099--40403150	25	2.1	24	82	3	59	26	5	1	65	1.26
40404969--40405008	21	1.9	21	85	10	55	30	42	17	10	1.82
40408005--40408527	125	4.2	125	89	1	724	29	16	16	37	1.91
40408581--40408683	34	3.1	33	83	4	118	41	13	0	44	1.44
40409950--40409999	17	2.9	17	93	0	91	44	6	26	24	1.76
40413534--40413592	17	3.6	17	90	4	95	45	5	25	23	1.73
40418752--40418796	21	2.1	21	87	0	63	60	2	2	35	1.22
40419224--40419285	18	3.6	17	74	8	63	77	3	11	8	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40419241--40419308	28	2.5	27	83	6	84	73	5	8	11	1.24
40422013--40422061	17	2.9	17	79	17	57	2	24	2	71	1.07
40426424--40426487	20	3.2	20	84	0	83	34	18	9	37	1.83
40426469--40426502	15	2.2	16	89	5	52	38	14	5	41	1.70
40435229--40435296	30	2.3	30	97	0	127	22	8	39	29	1.84
40453271--40453540	135	2.0	135	97	0	504	41	16	12	29	1.86
40457041--40457168	67	1.9	67	95	0	229	26	32	17	23	1.96
40457290--40457437	57	2.5	60	86	7	203	20	24	22	32	1.98
40458132--40458168	9	4.1	9	92	0	65	45	13	10	29	1.77
40464269--40464310	20	2.2	18	87	8	57	45	4	0	50	1.23

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144