genome.fa.s11.2.7.7.80.10.50.1000.89.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr6
Parameters: 2 7 7 80 10 50 1000
Length:  44797108

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   

This is table  89  of  144  ( 17221 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26963087--26963136	26	1.9	26	87	0	73	82	4	14	0	0.82
26965143--26965281	71	1.9	73	84	13	191	23	0	15	61	1.34
26970408--26970481	25	2.9	26	76	15	73	44	8	18	28	1.78
26980963--26980987	8	3.1	8	100	0	50	0	12	0	88	0.53
26983625--26983652	5	5.6	5	100	0	56	57	0	0	42	0.99
26986835--26986878	2	22.0	2	95	0	79	0	50	2	47	1.13
26996038--26996333	114	2.6	111	79	7	312	31	18	22	28	1.97
26995859--26996223	188	2.0	186	87	1	523	32	17	22	27	1.96
26996085--26996335	112	2.2	113	81	5	285	29	18	23	28	1.98
26995857--26996634	300	2.6	299	88	1	1108	31	17	23	28	1.97
26996345--26996681	114	2.9	114	88	3	473	28	17	25	28	1.97
26996797--26996871	16	4.5	17	93	3	127	33	0	9	57	1.31
26996797--26996871	33	2.3	33	93	4	125	33	0	9	57	1.31
26999588--27000252	246	2.7	247	95	1	1192	47	10	8	34	1.68
27000274--27000431	9	17.8	9	73	14	123	44	21	1	31	1.63
27000274--27000391	25	4.6	25	80	6	128	45	21	1	31	1.61
27004731--27004785	28	1.9	29	88	3	85	18	45	1	34	1.60
27007950--27008174	43	5.3	43	83	3	294	25	18	28	28	1.98
27009409--27009505	49	1.9	52	87	10	148	44	8	16	30	1.77
27009411--27009521	49	2.2	51	82	7	129	45	9	15	30	1.77
27010460--27010534	38	1.9	39	89	5	116	37	20	10	32	1.87
27014698--27014736	18	2.1	19	86	13	55	48	15	12	23	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27026895--27026950	17	3.2	17	84	5	67	44	14	3	37	1.62
27028022--27028066	16	2.9	16	93	6	76	57	6	0	35	1.25
27034184--27034253	36	2.0	36	91	2	115	25	7	20	47	1.75
27034334--27034372	20	2.0	20	100	0	78	41	15	17	25	1.89
27040476--27040750	131	2.1	131	97	0	523	34	17	15	32	1.91
27043043--27043103	28	2.2	28	100	0	122	39	3	42	14	1.62
27044902--27045005	45	2.3	45	86	0	145	42	16	17	24	1.88
27045205--27045292	40	2.2	41	87	2	124	40	20	7	30	1.81
27045205--27045272	21	3.3	21	68	15	61	38	20	8	32	1.84
27045554--27045580	13	2.1	13	100	0	54	0	22	0	77	0.76
27045604--27045639	4	8.5	4	88	11	54	0	22	2	75	0.94
27046536--27046619	3	28.3	3	92	2	143	0	29	0	70	0.88
27048224--27048313	21	4.3	21	80	8	103	35	24	23	16	1.95
27049436--27049461	13	2.0	13	100	0	52	61	0	0	38	0.96
27051859--27051923	20	3.3	19	73	16	51	38	16	21	23	1.93
27052110--27052269	38	4.2	38	86	0	230	20	18	27	33	1.96
27054642--27054674	12	2.8	12	90	0	57	12	24	39	24	1.89
27056326--27056375	26	1.9	26	95	0	91	40	4	4	52	1.39
27057623--27057657	18	1.9	18	100	0	70	34	11	17	37	1.85
27057709--27057745	9	4.1	9	89	0	56	43	13	13	29	1.82
27060252--27060281	16	1.9	16	93	6	53	30	0	20	50	1.49
27065062--27065102	17	2.5	16	84	7	55	46	21	0	31	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27067214--27067266	27	2.0	27	96	0	97	24	16	13	45	1.83
27068631--27068683	21	2.5	21	90	0	79	32	37	7	22	1.82
27070296--27070340	19	2.3	19	84	3	54	80	4	6	8	1.03
27074186--27074632	224	2.0	224	98	0	867	31	20	15	32	1.94
27077526--27077584	25	2.3	27	82	11	86	23	22	16	37	1.94
27077533--27077588	25	2.2	25	93	0	94	23	25	14	37	1.92
27077541--27077594	25	2.2	25	93	0	90	25	22	14	37	1.93
27077543--27077610	25	2.9	23	84	6	84	22	25	16	36	1.94
27082365--27082466	38	2.7	38	86	3	134	38	4	8	48	1.56
27082900--27082942	17	2.4	18	78	21	54	18	37	20	23	1.94
27103373--27103482	55	2.0	55	98	0	211	20	28	9	41	1.83
27106418--27106500	11	7.8	12	70	18	51	25	27	1	45	1.61
27106669--27106731	18	3.5	18	68	20	51	36	0	3	60	1.13
27108341--27108383	18	2.4	18	88	0	59	18	27	9	44	1.80
27111894--27112195	126	2.4	126	90	0	478	25	20	19	33	1.97
27120925--27121322	109	3.7	109	88	1	575	35	18	15	30	1.92
27121357--27121394	20	1.9	20	84	10	51	57	2	13	26	1.49
27121640--27121673	18	1.9	18	88	5	52	52	0	14	32	1.42
27123861--27123905	22	2.1	21	88	8	65	51	8	0	40	1.33
27125841--27125891	23	2.2	23	89	0	75	21	9	47	21	1.79
27140119--27140190	33	2.2	32	87	7	101	27	4	18	50	1.65
27147024--27147141	27	4.4	27	86	2	157	22	16	16	44	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27147024--27147141	54	2.2	54	92	3	193	22	16	16	44	1.86
27151677--27151743	25	2.7	24	86	11	82	29	17	16	35	1.92
27153027--27153065	5	7.8	5	100	0	78	41	17	0	41	1.50
27153421--27153472	24	2.2	24	92	0	86	51	7	3	36	1.49
27160314--27160369	24	2.3	24	93	0	94	46	7	7	39	1.59
27160325--27160376	24	2.2	24	96	0	95	50	3	5	40	1.45
27160696--27160740	6	7.3	6	97	2	81	51	46	0	2	1.13
27161182--27161232	20	2.5	21	81	12	54	41	0	3	54	1.19
27176554--27176630	28	2.7	27	88	4	100	36	1	31	31	1.66
27176555--27176623	21	3.3	21	78	8	70	37	1	30	30	1.66
27176554--27176615	14	4.5	13	73	13	52	38	0	30	30	1.58
27176555--27176606	7	7.4	7	95	0	86	38	0	30	30	1.58
27182925--27182969	21	2.0	24	87	12	69	40	6	4	48	1.49
27183100--27183136	20	1.9	18	89	10	56	37	8	5	48	1.56
27188155--27188199	23	2.0	23	86	8	65	42	0	0	57	0.98
27191394--27191441	5	9.2	5	78	17	53	77	0	18	4	0.93
27191400--27191442	22	2.0	22	90	9	70	79	0	18	2	0.85
27201937--27202000	17	3.9	17	67	29	50	7	31	0	60	1.25
27202097--27202145	22	2.2	22	88	0	71	2	34	0	63	1.06
27203331--27203488	50	3.2	50	87	1	219	24	15	25	34	1.94
27204376--27204412	16	2.3	16	95	0	65	45	13	13	27	1.81
27209371--27209422	20	2.4	22	81	9	63	5	30	3	59	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27210715--27210942	50	4.6	50	84	2	287	25	14	23	35	1.94
27211122--27211153	16	2.0	16	93	0	55	40	0	15	43	1.47
27213570--27213623	18	3.1	18	86	2	74	40	18	14	25	1.89
27213642--27213676	18	1.9	18	88	0	52	34	17	17	31	1.93
27214582--27214612	15	2.0	16	93	6	55	61	0	0	38	0.96
27214650--27214706	15	3.5	15	71	17	51	49	1	1	47	1.22
27215738--27215857	44	2.7	44	86	0	168	40	16	16	25	1.89
27217094--27217235	45	3.2	45	85	2	178	33	28	14	23	1.94
27217639--27217825	45	4.2	44	82	2	185	32	26	14	25	1.95
27216691--27217787	545	2.0	544	99	0	2176	31	21	11	35	1.89
27217663--27217829	90	1.9	90	85	2	237	32	25	15	25	1.95
27217664--27217829	45	3.7	45	82	1	190	33	25	15	25	1.95
27219637--27219704	26	2.6	26	78	2	64	32	35	17	14	1.91
27221596--27221643	15	3.1	15	85	11	69	68	2	0	29	1.01
27221598--27221636	17	2.4	17	87	8	55	69	2	0	28	1.02
27221882--27221926	18	2.4	19	82	13	58	35	0	0	64	0.94
27221882--27221960	17	4.5	17	73	14	63	31	1	0	67	0.99
27221923--27221980	26	2.3	25	81	3	71	29	5	1	63	1.25
27226534--27226559	7	3.7	7	100	0	52	42	26	0	30	1.56
27229920--27229980	18	3.3	19	84	9	81	36	8	21	34	1.83
27229920--27229988	18	3.8	18	80	1	75	34	10	20	34	1.86
27236178--27236229	24	2.2	24	82	6	61	32	17	3	46	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27236652--27236689	12	3.2	12	82	14	51	34	5	0	60	1.19
27238745--27238812	12	5.8	12	78	3	66	32	7	2	57	1.41
27245333--27245436	55	1.9	55	89	0	163	29	17	24	28	1.97
27245333--27245462	55	2.4	55	81	5	154	30	15	23	30	1.95
27246287--27246317	16	2.0	15	93	6	53	38	0	19	41	1.51
27256536--27256578	13	2.9	15	76	16	54	44	0	13	41	1.44
27258416--27259075	152	4.3	153	86	5	922	52	7	10	29	1.62
27260617--27260667	20	2.6	19	82	11	59	56	15	11	15	1.66
27262995--27263028	18	1.9	18	88	5	52	26	23	26	23	2.00
27263762--27263822	30	2.0	31	90	3	97	19	44	0	36	1.51

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144