genome.fa.s11.2.7.7.80.10.50.1000.109.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr6
Parameters: 2 7 7 80 10 50 1000
Length:  44797108

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   

This is table  109  of  144  ( 17221 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33573633--33573657	2	12.5	2	100	0	50	0	48	0	52	1.00
33576846--33576903	20	3.1	18	74	18	55	58	0	5	36	1.20
33576872--33576959	20	4.4	20	64	8	54	45	1	5	47	1.33
33581849--33581918	33	2.1	33	100	0	140	42	2	28	25	1.69
33583587--33583634	16	2.9	17	81	6	62	27	2	10	60	1.41
33584433--33584474	20	2.1	20	86	0	57	47	0	7	45	1.30
33591411--33592614	610	2.0	610	94	0	2131	34	20	14	30	1.93
33595218--33595341	30	4.1	30	90	1	176	27	22	5	44	1.75
33595228--33595335	15	7.2	15	68	12	78	27	20	6	45	1.75
33599910--33600003	30	3.1	30	89	1	134	26	23	6	43	1.77
33599920--33599997	15	5.2	15	68	11	61	26	20	7	44	1.78
33602279--33602395	62	1.9	61	87	5	175	50	4	3	41	1.38
33602374--33602423	20	2.7	19	80	20	61	54	2	2	42	1.23
33604906--33604951	23	2.0	24	83	12	60	45	0	0	54	0.99
33607746--33607804	23	2.5	24	80	2	66	76	5	3	15	1.10
33608126--33608171	23	2.1	22	92	8	76	58	4	6	30	1.43
33615347--33615405	26	2.3	25	82	5	73	32	18	8	40	1.81
33615361--33615421	26	2.3	26	83	5	79	34	11	11	42	1.77
33618904--33618970	31	2.1	31	86	5	89	58	8	14	17	1.62
33618915--33618988	31	2.4	31	84	4	87	50	8	18	22	1.74
33633123--33633156	14	2.4	14	95	0	59	35	17	8	38	1.81
33634054--33634115	19	3.0	21	76	19	60	53	1	1	43	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33634054--33634127	22	3.5	21	71	15	64	54	1	2	41	1.23
33638282--33638316	9	4.0	9	96	3	63	34	0	0	65	0.93
33641640--33641726	28	3.1	28	69	17	74	43	1	2	52	1.21
33641794--33641828	18	2.0	17	88	5	52	45	0	0	54	0.99
33641784--33642097	156	2.0	157	96	0	576	46	6	3	43	1.45
33641963--33642004	15	2.7	16	82	14	52	45	0	4	50	1.23
33642149--33642239	45	2.0	45	82	2	112	38	27	5	28	1.79
33642223--33642255	16	2.1	16	100	0	66	39	36	0	24	1.56
33646040--33646074	17	2.0	18	88	5	54	11	5	14	68	1.37
33648038--33648077	16	2.5	16	95	0	71	0	20	27	52	1.46
33650148--33650406	74	3.5	73	74	13	201	38	10	13	36	1.80
33650642--33650666	13	1.9	13	100	0	50	64	0	12	24	1.27
33657448--33657497	20	2.5	20	86	0	64	24	26	0	50	1.50
33660571--33660622	23	2.3	22	75	21	54	9	23	1	65	1.32
33665706--33665740	18	1.9	18	88	0	52	0	8	14	77	0.99
33685150--33685245	48	2.0	48	89	0	147	30	17	11	40	1.85
33688672--33688743	36	2.0	36	97	0	135	36	12	9	41	1.76
33690588--33690625	20	1.9	20	84	10	51	26	5	7	60	1.46
33690790--33690833	22	2.0	22	95	0	79	25	18	4	52	1.64
33695103--33695145	18	2.4	18	80	7	52	13	2	6	76	1.08
33696788--33696827	19	2.1	19	100	0	80	62	15	5	17	1.49
33699142--33699256	43	2.7	43	83	6	142	30	13	23	32	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33702188--33702229	22	1.9	22	85	9	59	66	7	0	26	1.17
33716026--33716077	20	2.6	19	87	6	77	55	5	7	30	1.52
33716435--33716486	21	2.4	22	77	6	61	46	0	1	51	1.12
33719715--33719756	19	2.2	19	83	8	50	16	7	11	64	1.48
33730413--33730556	72	2.0	72	95	2	263	34	17	11	36	1.85
33738416--33738720	40	7.6	40	85	6	384	27	28	21	22	1.99
33738416--33738720	80	3.8	80	89	3	436	27	28	21	22	1.99
33743400--33743453	27	2.0	27	88	0	81	38	12	7	40	1.72
33755618--33755646	10	2.9	10	100	0	58	27	0	0	72	0.85
33761172--33761197	11	2.4	11	100	0	52	23	19	7	50	1.73
33761313--33761370	27	2.1	27	87	0	80	29	3	17	50	1.62
33767304--33767425	60	2.0	60	93	0	208	29	28	18	23	1.97
33767447--33767574	51	2.5	51	98	0	247	28	25	18	27	1.98
33768929--33768995	15	4.5	15	78	15	68	59	17	14	7	1.58
33768929--33768995	30	2.3	30	80	15	77	59	17	14	7	1.58
33775910--33776141	40	5.8	40	92	2	324	25	28	21	24	1.99
33785194--33785371	27	6.6	27	84	3	205	29	28	15	26	1.96
33785215--33785370	82	1.9	81	88	3	233	29	28	15	26	1.96
33792055--33792096	13	3.2	13	83	6	57	66	0	4	28	1.12
33799846--33799926	34	2.4	34	82	0	99	30	20	19	28	1.97
33800111--33800169	28	2.1	28	80	0	64	30	20	13	35	1.91
33800381--33800419	16	2.5	15	88	8	60	25	15	35	23	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33802764--33802935	46	3.7	46	79	4	177	29	18	23	29	1.97
33809355--33809444	34	2.6	34	85	3	119	30	17	23	28	1.97
33809622--33809668	14	3.4	14	78	0	58	25	21	19	34	1.96
33809622--33809683	28	2.2	28	82	5	72	24	20	20	33	1.97
33811961--33812005	21	2.1	22	83	4	56	44	2	17	35	1.62
33829086--33829152	34	2.0	34	94	2	118	58	5	5	29	1.46
33841227--33841285	21	2.9	21	85	10	77	15	0	6	77	0.96
33843232--33843339	42	2.5	42	85	7	137	25	20	25	28	1.99
33843235--33843352	43	2.8	42	76	10	123	25	19	25	29	1.98
33853465--33853528	25	2.6	25	82	5	67	39	9	20	31	1.84
33853494--33853553	31	1.9	31	83	6	77	35	6	21	36	1.80
33864533--33864588	11	5.5	11	71	16	57	35	12	19	32	1.89
33864522--33864588	20	3.3	20	93	0	116	34	11	20	32	1.90
33864637--33864732	24	4.0	24	91	6	151	29	20	21	28	1.98
33864637--33864732	47	2.0	48	90	8	151	29	20	21	28	1.98
33864925--33864987	31	2.0	31	93	0	108	36	15	23	23	1.94
33865756--33865921	83	2.0	83	91	0	269	20	16	18	44	1.87
33869059--33869324	103	2.6	104	90	3	419	19	20	29	29	1.97
33870976--33871050	17	4.5	17	74	15	75	28	26	22	22	1.99
33873013--33873051	18	2.2	18	86	9	53	48	17	7	25	1.74
33878879--33879066	102	1.9	100	94	2	331	44	6	15	33	1.73
33885968--33886002	6	5.8	6	100	0	70	51	14	0	34	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33891717--33891765	24	2.0	24	92	0	80	28	18	8	44	1.78
33893059--33893089	14	2.1	15	94	5	55	35	0	25	38	1.56
33896485--33896619	41	3.4	40	82	5	159	25	18	24	31	1.97
33897787--33897822	18	1.9	19	94	5	65	25	27	25	22	2.00
33907450--33907506	27	2.1	27	83	0	69	61	1	7	29	1.32
33908602--33908627	13	2.0	13	100	0	52	15	38	30	15	1.88
33917197--33917247	16	3.3	16	67	10	52	27	5	15	50	1.67
33917192--33917253	30	2.1	30	100	0	124	30	8	16	45	1.76
33918010--33918354	50	6.8	50	80	7	358	24	18	24	32	1.97
33918061--33918364	101	3.0	101	94	0	502	24	19	25	31	1.98
33925785--33925831	18	2.6	18	83	6	60	17	44	25	12	1.84
33929324--33929439	61	1.9	58	87	5	169	43	3	3	50	1.36
33934486--33934547	6	10.2	6	80	3	70	75	4	4	14	1.13
33937672--33937717	5	9.0	5	78	21	51	36	2	0	60	1.09
33959219--33959252	10	3.4	10	87	0	50	70	0	29	0	0.87
33959220--33959337	58	2.0	59	95	1	211	53	2	38	5	1.39
33959278--33959316	20	2.0	20	89	0	60	64	0	30	5	1.15
33959502--33959527	13	2.0	13	100	0	52	15	46	23	15	1.83
33967220--33967263	17	2.6	17	88	0	70	20	34	22	22	1.97
33969891--33969985	42	2.2	42	79	5	102	30	24	17	27	1.97
33981124--33981455	166	2.0	166	96	0	610	26	21	20	31	1.98
33994110--33994150	21	2.0	21	85	9	57	34	24	19	21	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33994147--33994239	47	2.0	47	100	0	186	23	25	19	31	1.98
33995166--33995204	20	2.0	19	85	5	51	43	20	12	23	1.86
33995209--33995354	43	3.4	43	77	9	138	27	23	20	28	1.99
33998672--33999123	225	2.0	225	93	0	778	29	14	20	35	1.92
34001831--34001884	7	7.7	7	95	0	81	0	9	27	62	1.25
34023601--34023625	10	2.5	10	100	0	50	52	8	0	40	1.31
34024949--34025000	12	4.1	12	76	13	50	28	1	1	67	1.12
34025040--34025143	3	35.0	3	75	1	93	29	5	1	62	1.29
34025062--34025140	15	5.3	15	96	0	140	27	7	0	64	1.20
34025053--34025140	30	2.9	30	93	0	140	28	6	1	63	1.27

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144