genome.fa.s11.2.7.7.80.10.50.1000.49.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr6
Parameters: 2 7 7 80 10 50 1000
Length:  44797108

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   

This is table  49  of  144  ( 17221 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15384036--15384141	51	2.1	50	98	1	203	30	7	16	45	1.75
15383844--15384141	126	2.5	117	88	10	469	28	7	18	46	1.75
15388737--15388800	32	2.0	32	96	0	119	28	29	12	29	1.93
15405950--15405994	15	2.8	17	80	13	58	64	0	35	0	0.94
15410397--15410617	111	2.0	111	81	3	257	23	25	25	25	2.00
15415073--15415114	22	2.0	21	85	4	57	47	0	0	52	1.00
15418586--15418769	33	5.5	33	70	11	113	34	16	21	26	1.95
15418589--15418784	103	1.9	103	85	2	268	33	17	23	25	1.97
15418657--15418818	66	2.4	68	75	9	161	32	17	25	24	1.96
15421914--15422158	9	25.8	9	67	17	88	59	3	2	34	1.28
15421955--15422022	29	2.4	27	79	13	75	61	2	0	35	1.11
15421970--15421999	16	1.9	15	93	6	51	63	0	0	36	0.95
15421977--15422018	20	2.0	21	86	4	59	59	2	0	38	1.10
15421955--15422081	57	2.2	57	79	13	136	61	3	0	35	1.12
15422477--15422523	10	4.7	10	78	0	58	25	2	2	70	1.10
15427415--15427444	16	1.9	15	93	6	51	26	0	0	73	0.84
15428987--15429016	15	1.9	16	93	6	53	36	0	13	50	1.42
15429488--15429581	42	2.3	42	80	7	104	22	28	31	17	1.96
15430764--15430788	7	3.6	7	100	0	50	28	0	12	60	1.32
15431877--15431945	25	2.7	26	81	2	86	46	5	10	37	1.62
15431941--15431988	17	2.7	18	83	6	62	47	20	2	29	1.61
15431994--15432338	47	7.1	47	78	11	365	46	25	0	27	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15431994--15432367	76	5.1	76	82	12	465	45	26	0	27	1.56
15431948--15432856	94	9.4	104	74	16	372	45	25	0	28	1.59
15432070--15432151	29	2.8	29	96	0	146	45	28	0	26	1.54
15431965--15432075	29	3.8	29	93	0	186	44	27	0	27	1.55
15432243--15432376	29	5.0	28	69	14	97	44	28	0	26	1.59
15432286--15432377	29	3.2	29	92	0	157	45	28	0	26	1.54
15432465--15432857	18	24.7	18	67	23	249	47	25	0	26	1.52
15432462--15432762	64	4.5	64	79	11	352	47	24	0	27	1.52
15432489--15432596	29	3.5	29	71	18	101	47	22	0	30	1.52
15432534--15432856	47	6.9	47	97	0	612	47	26	0	26	1.53
15432880--15432914	18	1.9	18	94	0	61	37	8	2	51	1.47
15432851--15433017	66	2.8	54	70	25	140	38	9	6	44	1.63
15432936--15432962	10	2.7	10	100	0	54	40	7	0	51	1.30
15433001--15433025	10	2.5	10	100	0	50	44	8	0	48	1.32
15432880--15433025	65	2.2	65	90	6	224	40	8	5	45	1.57
15436129--15436601	247	1.9	248	94	1	842	32	21	16	30	1.95
15436129--15436601	124	3.8	124	94	1	842	32	21	16	30	1.95
15439000--15439051	13	4.0	13	80	14	54	5	9	9	75	1.20
15450604--15450744	41	3.4	41	86	0	192	23	23	22	30	1.99
15450604--15450761	41	3.9	41	81	3	129	23	22	23	30	1.99
15456216--15456468	46	5.6	46	94	1	424	29	21	15	33	1.94
15463845--15463877	15	2.2	15	94	0	57	0	30	27	42	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15468029--15468301	67	4.1	67	77	6	250	27	23	17	32	1.97
15475250--15475291	15	2.8	15	88	0	66	42	23	33	0	1.55
15476332--15476440	39	2.8	39	91	1	166	51	24	2	21	1.61
15476571--15476633	17	3.5	17	71	12	63	36	3	11	49	1.54
15476568--15476642	37	2.0	37	97	0	141	37	4	13	45	1.62
15477299--15477342	21	2.0	22	86	4	63	63	4	27	4	1.33
15480815--15480880	21	3.0	23	70	17	66	27	7	4	60	1.43
15480804--15480961	39	3.9	39	78	13	160	24	12	5	58	1.55
15482312--15482391	42	1.9	42	97	0	151	45	5	16	33	1.69
15484380--15484408	14	2.1	14	100	0	58	44	6	20	27	1.77
15492110--15492134	13	1.9	13	100	0	50	48	8	4	40	1.51
15492115--15492203	29	3.1	28	68	17	83	55	6	4	33	1.47
15501665--15501721	30	1.9	30	85	3	80	42	3	24	29	1.71
15502117--15502164	23	2.1	23	100	0	96	25	25	25	25	2.00
15502140--15502329	50	3.8	50	91	0	299	26	23	30	20	1.99
15505330--15505381	24	2.2	24	89	0	77	55	9	1	32	1.43
15507300--15507351	24	2.2	24	89	0	77	55	9	1	32	1.43
15512327--15512361	18	2.0	18	94	5	63	0	2	51	45	1.16
15517387--15517436	20	2.5	20	77	3	57	42	0	32	26	1.56
15517795--15517832	16	2.4	16	90	0	58	31	0	34	34	1.58
15517811--15517901	45	2.0	44	85	2	119	32	5	27	34	1.80
15518066--15518100	18	2.0	17	88	5	52	54	0	0	45	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15518044--15518254	107	2.0	108	93	2	363	48	6	1	43	1.36
15518149--15518194	16	2.9	16	78	12	51	52	2	0	45	1.13
15518149--15518203	15	3.7	15	79	13	53	52	1	0	45	1.11
15518047--15518310	107	2.5	107	85	7	319	50	5	1	43	1.34
15525249--15525296	24	2.0	24	87	0	69	29	10	12	47	1.74
15528023--15528155	41	3.2	41	82	1	158	23	15	30	30	1.95
15528536--15528573	20	1.9	20	84	10	51	21	5	28	44	1.73
15528517--15528601	34	2.5	34	82	3	91	25	4	24	44	1.73
15529843--15529883	8	5.1	8	90	0	64	39	0	12	48	1.41
15530984--15531012	6	5.0	6	95	4	51	82	0	0	17	0.66
15531387--15531423	17	2.2	17	90	9	58	54	0	0	45	1.00
15532497--15532527	15	2.1	14	94	5	53	16	22	38	19	1.90
15536480--15536565	45	2.0	43	81	4	100	24	27	18	29	1.98
15536548--15536663	43	2.8	40	84	6	153	25	17	28	29	1.97
15536548--15536663	40	2.8	41	82	8	146	25	17	28	29	1.97
15547910--15547949	20	2.1	20	86	9	57	52	0	15	32	1.43
15563857--15563899	21	2.0	21	82	8	52	60	16	16	6	1.56
15565044--15565113	3	23.3	3	73	5	61	30	7	1	61	1.31
15565310--15565341	15	2.1	15	94	0	55	18	3	3	75	1.08
15566707--15566745	19	2.0	21	85	10	55	69	5	10	15	1.34
15566946--15567000	21	2.6	21	94	0	101	36	10	10	41	1.75
15573806--15573899	47	2.0	47	97	0	179	36	8	24	30	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15574310--15574335	13	2.0	13	100	0	52	15	30	15	38	1.88
15580020--15580072	23	2.3	23	96	0	97	20	22	22	33	1.97
15580071--15580238	87	1.9	87	100	0	336	20	20	27	30	1.98
15580400--15580433	17	1.9	18	88	5	52	29	0	17	52	1.45
15581728--15581768	21	2.0	21	90	0	64	24	19	29	26	1.98
15582669--15582712	3	15.0	3	90	4	72	2	31	0	65	1.05
15587785--15587817	13	2.5	13	86	13	50	0	18	0	81	0.68
15592340--15592420	25	3.2	25	78	0	81	35	16	27	20	1.94
15595428--15595536	50	2.2	50	83	3	130	19	29	15	35	1.93
15595428--15595536	25	4.4	25	82	2	103	19	29	15	35	1.93
15595466--15595544	25	3.2	24	77	13	79	20	30	17	31	1.96
15596834--15596973	40	3.5	40	78	6	151	31	25	17	25	1.97
15596839--15596974	41	3.5	40	77	7	143	33	25	16	24	1.96
15597901--15597958	22	2.7	21	84	12	66	27	5	0	67	1.12
15597900--15597948	13	3.6	14	78	10	50	24	8	0	67	1.18
15599533--15599572	17	2.4	17	87	8	55	12	2	7	77	1.07
15599850--15600734	45	19.4	44	72	12	475	28	18	17	34	1.94
15600327--15600424	51	1.9	51	82	0	124	30	16	16	36	1.91
15600134--15600734	89	6.6	90	76	8	446	28	18	16	36	1.93
15614571--15614603	6	5.5	6	100	0	66	33	51	15	0	1.43
15617746--15617872	62	2.0	62	81	3	148	38	14	7	40	1.73
15618868--15618894	5	5.4	5	100	0	54	18	0	62	18	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15620517--15621207	345	2.0	345	97	0	1312	22	20	22	34	1.97
15626955--15626985	14	2.2	14	94	0	53	38	0	12	48	1.42
15627209--15627238	6	5.0	6	100	0	60	16	0	0	83	0.65
15628580--15628609	4	7.5	4	92	0	51	76	3	20	0	0.92
15628777--15628893	58	2.0	60	93	3	202	34	0	12	52	1.39
15629269--15629320	20	2.5	22	70	20	56	40	0	1	57	1.10
15629540--15629578	16	2.4	16	95	0	69	38	0	5	56	1.22
15631450--15631524	18	4.2	18	81	8	100	28	6	1	64	1.27
15631450--15631524	35	2.1	35	85	7	98	28	6	1	64	1.27
15634840--15634946	50	2.1	50	86	6	146	45	13	12	28	1.79

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144