genome.fa.s11.2.7.7.80.10.50.1000.54.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr6
Parameters: 2 7 7 80 10 50 1000
Length:  44797108

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   

This is table  54  of  144  ( 17221 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16703980--16704049	36	1.9	36	85	5	97	75	4	4	15	1.11
16704960--16705001	19	2.3	19	83	4	50	57	4	11	26	1.54
16708081--16708127	24	2.0	24	84	16	62	34	0	17	48	1.47
16708098--16708151	21	2.6	21	75	13	58	38	0	12	48	1.42
16716805--16716899	38	2.4	38	86	5	120	48	9	8	33	1.66
16716879--16716982	37	2.9	36	74	7	95	44	12	9	33	1.75
16716879--16717380	18	27.5	18	67	17	157	42	11	11	33	1.79
16717154--16717201	23	2.1	23	88	7	71	33	6	10	50	1.62
16717104--16717218	37	3.0	40	79	15	111	39	9	13	38	1.77
16716876--16717380	17	27.7	17	66	18	155	42	11	11	33	1.78
16717082--16717375	35	8.2	33	72	18	157	43	11	11	32	1.78
16717716--16717751	14	2.6	14	91	4	56	69	5	2	22	1.22
16717887--16717937	21	2.5	21	82	14	63	0	21	0	78	0.75
16717884--16717937	20	2.5	20	85	8	72	0	22	0	77	0.76
16717888--16717937	14	3.5	14	81	10	57	0	22	0	78	0.76
16718164--16718221	23	2.5	23	91	0	89	8	22	51	17	1.72
16718243--16718295	7	7.7	7	82	4	54	0	26	0	73	0.83
16719334--16720285	243	4.0	237	84	7	1190	36	19	16	28	1.93
16719293--16720285	80	12.5	79	82	7	987	35	19	16	28	1.94
16721181--16721273	10	9.4	10	78	13	52	2	7	8	81	0.94
16721196--16721273	37	2.1	37	85	2	104	2	8	7	80	0.98
16727360--16727452	38	2.5	38	85	5	127	47	8	9	34	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16727483--16727524	20	2.1	20	86	0	57	40	9	9	40	1.70
16727432--16727905	17	26.3	18	67	18	127	41	12	13	32	1.82
16727633--16727890	35	7.3	36	72	16	123	43	12	13	30	1.81
16727759--16727878	18	6.8	17	69	20	59	45	13	11	29	1.78
16727633--16727845	70	3.0	71	79	10	206	44	12	13	29	1.81
16728227--16728262	14	2.6	14	91	4	56	69	5	2	22	1.22
16728407--16728458	20	2.6	19	80	11	59	0	19	0	80	0.71
16728758--16728827	7	10.6	7	77	14	60	0	27	0	72	0.84
16728769--16728832	3	22.0	3	80	15	64	0	31	0	68	0.90
16728769--16728832	8	7.3	9	78	18	64	0	31	0	68	0.90
16728758--16728827	21	3.2	21	80	10	70	0	27	0	72	0.84
16728761--16728827	32	2.0	35	85	8	95	0	26	0	73	0.84
16730012--16730049	17	2.2	17	100	0	76	28	10	18	42	1.83
16732022--16732075	24	2.2	24	90	0	81	42	22	25	9	1.83
16734219--16734300	11	7.5	11	75	17	73	36	1	1	60	1.12
16734228--16734286	30	2.0	30	83	6	75	33	1	1	62	1.15
16734202--16734317	41	2.8	41	90	5	182	35	0	0	62	1.07
16734248--16734337	20	4.2	20	72	12	72	37	1	2	58	1.17
16735393--16735419	6	4.5	6	100	0	54	66	0	0	33	0.92
16738646--16738730	9	9.0	9	74	13	73	31	0	1	67	0.99
16738646--16738730	39	2.2	36	88	12	118	31	0	1	67	0.99
16738688--16738721	16	2.1	17	88	5	52	32	0	0	67	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16738676--16738732	27	2.2	25	90	6	87	35	0	0	64	0.93
16739320--16739400	31	2.7	30	84	5	101	30	4	14	49	1.65
16745282--16745328	21	2.2	21	88	0	67	55	8	10	25	1.62
16746140--16746182	22	2.0	22	86	4	61	25	2	2	69	1.12
16746658--16746691	14	2.4	14	95	0	59	17	8	20	52	1.71
16746759--16747047	42	6.9	41	81	3	166	28	21	20	30	1.98
16746847--16747091	42	5.8	42	88	2	350	24	22	20	33	1.97
16746844--16747080	126	1.9	126	93	1	413	25	22	19	32	1.98
16748748--16748801	28	2.0	28	85	10	76	44	9	9	37	1.69
16749200--16749240	15	2.7	15	96	0	73	39	4	7	48	1.52
16749544--16749585	17	2.5	17	96	3	77	45	0	0	54	0.99
16750805--16750867	23	2.8	23	95	2	110	36	14	7	41	1.75
16752773--16752859	29	2.9	29	76	11	86	55	4	9	31	1.52
16753262--16753314	3	17.7	3	100	0	106	33	0	0	66	0.92
16760021--16760137	62	1.9	61	84	5	157	50	4	4	41	1.41
16760122--16760169	25	1.9	25	83	8	62	47	4	2	45	1.33
16764295--16764345	19	2.6	20	76	20	54	49	3	1	45	1.32
16767724--16767753	15	2.0	15	93	0	51	43	10	6	40	1.64
16774744--16774800	29	2.0	29	89	0	87	75	22	1	0	0.90
16775483--16775516	6	5.5	6	86	6	50	76	0	2	20	0.92
16775491--16775565	35	2.1	36	82	5	89	58	2	2	36	1.26
16776026--16776050	3	8.3	3	100	0	50	68	0	0	32	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16778102--16778135	14	2.2	16	90	10	54	50	2	0	47	1.16
16782802--16782840	21	1.9	21	94	5	71	38	12	2	46	1.56
16783355--16783381	6	4.5	6	100	0	54	0	70	0	29	0.88
16786532--16786598	34	1.9	35	87	3	100	43	13	10	32	1.78
16792572--16792596	11	2.3	11	100	0	50	0	8	0	92	0.40
16793150--16793286	58	2.3	59	80	7	154	40	16	15	27	1.88
16800498--16800522	11	2.3	11	100	0	50	0	8	0	92	0.40
16801076--16801212	58	2.3	59	80	7	154	40	16	15	27	1.88
16803373--16803955	40	14.6	40	94	1	929	24	20	28	27	1.99
16811696--16812463	222	3.5	214	80	7	738	46	18	14	21	1.84
16827522--16827552	15	2.1	15	100	0	62	48	6	19	25	1.72
16845029--16845077	23	2.2	22	82	10	55	32	4	18	44	1.68
16845787--16846020	113	2.1	113	82	8	282	21	22	24	31	1.98
16846358--16846406	18	2.5	21	80	9	59	61	10	2	26	1.39
16846672--16846702	15	2.0	16	93	6	55	16	0	45	38	1.47
16846994--16847071	14	5.6	14	73	0	66	7	0	44	47	1.31
16847490--16847998	230	2.2	230	89	1	761	28	18	19	33	1.95
16848328--16848371	19	2.3	19	84	0	61	31	43	2	22	1.66
16849885--16849946	20	3.2	20	86	4	90	46	8	4	40	1.55
16850005--16850095	19	5.1	18	68	17	64	50	20	0	28	1.49
16849985--16850124	26	5.4	26	94	0	246	49	20	0	30	1.49
16850016--16850095	19	4.5	19	70	20	73	50	20	0	30	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16859158--16859237	30	2.6	31	74	14	78	35	10	13	41	1.78
16865131--16865173	17	2.4	18	84	7	52	30	6	2	60	1.35
16868180--16868217	6	6.3	6	82	11	51	81	2	0	15	0.80
16882819--16882853	13	2.7	13	81	0	52	37	28	8	25	1.85
16883240--16883558	164	1.9	166	85	3	439	39	20	11	27	1.88
16885786--16885863	31	2.6	29	85	6	102	32	30	14	23	1.94
16886313--16886346	17	2.0	17	94	0	59	41	14	35	8	1.77
16891682--16891710	10	2.7	11	89	10	51	34	0	0	65	0.93
16903272--16903317	24	2.0	23	84	12	60	41	0	6	52	1.27
16904787--16905164	125	2.9	126	87	4	517	36	23	12	28	1.90
16909687--16909725	10	4.2	9	84	15	53	64	0	0	35	0.94
16914104--16914164	19	3.1	19	81	9	70	50	0	1	47	1.10
16914365--16914398	16	2.1	16	94	0	59	44	5	11	38	1.65
16920274--16920332	29	2.1	28	87	3	82	20	10	35	33	1.86
16922619--16922644	5	5.2	5	100	0	52	42	0	19	38	1.51
16925216--16925254	12	3.4	11	80	13	51	28	38	33	0	1.57
16926234--16926270	18	2.1	18	94	0	65	13	45	5	35	1.66
16927131--16927198	3	22.7	3	100	0	136	67	32	0	0	0.91
16927325--16927363	11	3.6	11	93	6	71	0	25	0	74	0.82
16927465--16927522	27	2.1	27	96	0	107	13	27	31	27	1.94
16927586--16927650	29	2.4	28	92	7	107	49	0	10	40	1.38
16928940--16929004	31	2.1	31	85	0	85	40	6	15	38	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16931373--16931594	25	8.9	25	74	5	164	18	25	19	37	1.94
16931994--16932330	168	2.0	168	99	0	665	34	7	21	36	1.82
16937958--16938074	55	2.1	55	84	3	155	17	30	27	24	1.97
16938375--16938435	18	3.5	17	78	8	61	44	1	4	49	1.33
16938431--16938485	17	3.1	17	78	17	58	30	1	3	63	1.22
16945248--16945310	32	1.9	34	83	6	85	17	20	34	26	1.95
16948671--16948796	64	2.0	64	95	0	225	18	25	24	31	1.97
16950821--16950984	43	3.9	43	80	7	183	26	16	27	29	1.97
16958418--16958694	95	2.9	95	80	8	303	35	11	16	36	1.86
16958393--16958695	97	3.1	94	80	7	299	34	11	18	35	1.87

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144