genome.fa.s11.2.7.7.80.10.50.1000.112.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr6
Parameters: 2 7 7 80 10 50 1000
Length:  44797108

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   

This is table  112  of  144  ( 17221 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34667759--34667799	16	2.4	17	84	15	50	26	12	2	58	1.46
34669373--34669399	2	13.5	2	100	0	54	0	0	48	51	1.00
34676859--34676905	3	15.7	3	100	0	94	65	0	0	34	0.93
34685371--34685407	18	2.1	18	94	0	65	21	5	13	59	1.54
34685374--34685417	18	2.4	18	85	7	54	22	4	11	61	1.48
34690581--34690816	101	2.3	101	77	7	239	38	11	19	30	1.87
34691806--34691849	19	2.4	19	84	3	54	68	0	2	29	1.02
34692298--34692334	16	2.4	16	82	8	51	43	0	0	56	0.99
34692721--34692758	5	7.6	5	85	8	51	81	0	15	2	0.80
34692721--34692758	14	2.5	15	83	12	51	81	0	15	2	0.80
34693660--34693721	30	2.1	30	82	11	74	40	3	9	46	1.53
34695938--34695999	31	2.0	31	84	6	81	53	9	9	27	1.65
34701308--34701441	9	15.0	9	74	14	66	32	11	0	55	1.42
34701371--34701440	3	23.7	3	91	2	88	34	7	0	58	1.25
34701353--34701441	9	10.0	9	82	9	69	33	10	1	55	1.41
34708266--34708308	20	2.2	20	87	8	61	46	6	13	32	1.71
34709690--34709717	13	2.2	13	100	0	56	21	0	21	57	1.41
34710824--34710868	22	2.0	22	100	0	90	42	13	13	31	1.82
34712700--34712874	60	2.9	58	80	10	181	45	10	6	37	1.66
34714649--34714701	20	2.7	20	78	0	61	32	9	22	35	1.86
34718755--34718811	29	2.0	29	85	0	78	50	14	1	33	1.52
34718804--34718856	26	2.0	26	88	3	79	24	18	5	50	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34723906--34723951	23	2.0	23	95	0	83	39	6	13	41	1.70
34728919--34729068	44	3.4	42	75	14	151	32	24	17	26	1.97
34728858--34729113	87	2.9	87	86	1	323	28	25	19	27	1.98
34728956--34729091	44	3.1	43	77	11	159	30	26	16	27	1.97
34728965--34729112	44	3.4	42	73	15	129	31	22	18	28	1.97
34729194--34729352	44	3.6	45	71	12	139	28	20	20	31	1.97
34736764--34736808	19	2.3	20	88	7	67	44	6	22	26	1.77
34744582--34744620	15	2.6	15	91	0	60	20	0	41	38	1.53
34744577--34744621	22	2.0	22	82	0	54	22	0	35	42	1.54
34744658--34744727	14	4.9	14	75	1	59	22	2	28	45	1.67
34744932--34744978	21	2.2	21	92	0	76	17	4	31	46	1.67
34745232--34745273	21	2.0	20	90	4	66	23	4	26	45	1.73
34745944--34745975	7	4.7	7	96	3	57	87	0	0	12	0.54
34746288--34746323	13	2.8	13	95	0	63	33	36	0	30	1.58
34747137--34747166	3	10.0	3	92	0	51	36	0	0	63	0.95
34749877--34750324	115	3.9	115	99	0	880	33	4	23	39	1.75
34750332--34750356	12	2.1	12	100	0	50	28	0	24	48	1.52
34749785--34750541	23	33.0	23	71	9	442	31	5	23	38	1.78
34751214--34751308	42	2.2	41	85	10	129	28	15	26	29	1.96
34751298--34751413	43	2.7	44	78	9	139	27	25	18	28	1.98
34754318--34754481	47	3.5	48	82	4	217	27	12	26	33	1.93
34757579--34757603	12	2.1	12	100	0	50	32	8	24	36	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34760144--34760172	2	14.5	2	100	0	58	48	0	51	0	1.00
34771415--34771451	3	12.3	3	100	0	74	32	0	0	67	0.91
34773711--34773749	20	2.0	20	85	10	53	23	5	7	64	1.40
34793896--34794232	40	8.5	40	95	2	547	24	22	27	25	2.00
34801575--34801615	12	3.5	12	90	3	66	58	0	0	41	0.98
34803552--34803612	31	2.0	30	93	3	104	31	3	18	47	1.64
34806826--34806854	11	2.6	11	100	0	58	0	58	0	41	0.98
34807324--34807449	3	41.0	3	69	19	64	31	4	3	60	1.33
34807389--34807447	16	3.8	15	81	14	75	32	5	3	59	1.36
34807422--34807460	18	2.2	18	90	0	60	38	2	0	58	1.12
34807857--34807903	17	2.7	19	78	18	57	31	0	6	61	1.21
34807946--34808000	20	2.7	21	79	17	62	30	3	3	61	1.30
34808044--34808091	25	1.9	25	83	8	62	39	4	8	47	1.53
34808827--34808864	16	2.4	16	100	0	76	63	7	10	18	1.50
34816238--34816275	16	2.4	16	100	0	76	63	7	10	18	1.50
34816760--34816884	64	2.0	62	86	7	175	35	8	5	50	1.57
34818508--34818551	22	1.9	24	86	9	65	56	0	4	38	1.20
34818539--34818583	22	2.1	22	87	4	65	73	4	2	20	1.11
34823474--34823547	37	2.0	37	100	0	148	35	2	8	54	1.44
34827902--34827943	15	2.9	15	82	10	52	47	0	0	52	1.00
34828096--34828186	45	2.0	44	85	2	119	34	27	5	32	1.80
34828165--34828218	16	3.4	16	92	0	81	31	33	0	35	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34829568--34829627	27	2.2	27	81	0	66	23	25	28	23	2.00
34832888--34832945	31	1.9	30	89	6	91	55	3	1	39	1.27
34832987--34833029	22	2.0	21	86	4	59	46	0	4	48	1.22
34833646--34833729	19	4.3	19	65	28	59	54	15	0	29	1.41
34833571--34833749	60	3.0	60	92	0	295	54	12	0	32	1.38
34833651--34833693	22	2.0	22	86	9	61	53	13	0	32	1.41
34833801--34833843	14	2.9	15	79	10	52	65	4	0	30	1.13
34833907--34833971	13	4.8	13	80	10	53	0	24	0	75	0.81
34833910--34833973	19	3.3	19	81	16	69	0	26	0	73	0.84
34833906--34833973	27	2.5	28	83	9	86	0	26	0	73	0.83
34833906--34833973	28	2.5	27	81	13	77	0	26	0	73	0.83
34833906--34833972	22	3.2	21	78	17	68	0	25	0	74	0.82
34833910--34833973	9	6.5	10	75	24	57	0	26	0	73	0.84
34834240--34834295	26	2.1	25	83	12	67	60	5	0	33	1.19
34834240--34834295	30	1.9	28	85	7	76	60	5	0	33	1.19
34839722--34839768	24	2.0	24	91	0	76	34	17	6	42	1.74
34839850--34839914	12	5.3	12	77	3	58	35	18	10	35	1.86
34839853--34839909	25	2.3	25	78	3	62	38	17	10	33	1.84
34844965--34845029	20	3.2	20	67	16	53	15	27	20	36	1.92
34849209--34849250	14	3.1	14	73	13	52	33	42	0	23	1.55
34849199--34849255	26	2.2	25	96	3	105	36	42	0	21	1.53
34849466--34849531	25	2.7	25	85	2	98	21	28	9	40	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34854124--34854163	21	2.0	20	90	5	62	35	0	22	42	1.54
34854129--34854171	21	2.1	21	83	12	54	32	2	20	44	1.65
34855496--34855527	6	5.3	6	92	0	55	50	15	15	18	1.79
34856266--34856341	38	2.0	38	100	0	152	52	15	10	21	1.72
34867453--34867848	164	2.5	159	81	6	437	41	23	8	27	1.82
34868360--34868405	23	2.0	23	100	0	92	43	17	13	26	1.85
34873997--34874067	35	2.0	35	94	0	124	32	15	12	39	1.85
34880726--34880837	27	4.2	26	87	7	152	36	23	24	16	1.94
34880726--34880837	54	2.1	54	89	3	172	36	23	24	16	1.94
34896707--34897104	50	7.9	50	76	2	341	26	17	25	30	1.97
34896673--34897101	151	2.8	150	83	1	552	26	16	25	31	1.97
34904428--34904542	43	2.7	42	77	6	133	33	16	24	26	1.96
34906007--34906086	38	2.1	38	100	0	160	30	12	16	41	1.85
34913388--34913489	28	3.5	27	71	19	80	24	28	20	26	1.99
34913389--34913516	60	2.1	59	84	9	161	25	25	21	28	1.99
34915952--34915995	19	2.4	18	85	7	54	45	6	0	47	1.29
34918606--34918645	20	2.0	21	90	5	64	37	22	22	17	1.94
34923313--34923428	43	2.7	42	77	2	133	23	36	26	13	1.92
34923415--34923523	43	2.6	43	85	4	114	22	31	29	16	1.96
34923432--34923534	43	2.4	43	90	0	152	18	31	32	18	1.95
34923856--34923923	24	2.8	24	95	0	118	13	39	38	8	1.75
34933528--34933615	46	1.9	46	88	0	122	27	30	22	19	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34937147--34937193	6	7.8	6	76	9	51	76	2	4	17	1.04
34940321--34940474	76	2.0	76	98	0	299	25	15	13	44	1.83
34942382--34942414	13	2.6	13	90	4	50	48	12	0	39	1.40
34948080--34948212	46	2.8	50	79	15	165	29	27	20	22	1.98
34948089--34948161	20	3.3	20	66	23	56	27	30	20	21	1.98
34955625--34955837	45	4.7	45	99	0	417	27	28	24	20	1.99
34962663--34962774	43	2.6	43	86	10	158	31	27	17	23	1.97
34967266--34967517	84	3.0	84	84	3	258	28	25	21	23	1.99
34967266--34967518	43	6.0	43	73	9	196	28	25	21	24	1.99
34967379--34967535	43	3.7	43	75	10	160	28	23	21	26	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144