genome.fa.s11.2.7.7.80.10.50.1000.95.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr6
Parameters: 2 7 7 80 10 50 1000
Length:  44797108

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   

This is table  95  of  144  ( 17221 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29083451--29083876	236	1.8	236	85	5	601	30	23	13	31	1.93
29083650--29084104	89	5.1	88	82	3	448	31	23	13	31	1.93
29084240--29084297	22	2.6	22	84	7	73	43	17	3	36	1.66
29084253--29084310	19	2.8	20	84	10	64	39	17	6	36	1.76
29085150--29085467	100	3.2	100	89	0	501	26	22	20	30	1.98
29085182--29085472	50	5.8	50	71	3	226	27	23	20	28	1.99
29085434--29085806	168	2.2	168	85	3	511	27	25	17	29	1.98
29085767--29085951	50	3.9	50	74	13	199	27	24	20	27	1.99
29085775--29085942	92	1.8	92	96	0	309	26	25	20	27	1.99
29085300--29086281	478	2.0	482	90	1	1560	27	24	18	29	1.98
29085867--29085963	50	1.9	50	82	0	122	28	26	17	26	1.98
29085908--29086292	168	2.3	168	84	1	513	28	23	17	30	1.97
29086248--29086479	50	4.8	50	68	10	124	27	24	19	28	1.98
29085382--29086429	478	2.2	474	85	4	1266	27	25	18	28	1.98
29086285--29086470	92	2.0	92	87	4	268	27	25	20	26	1.99
29086411--29086505	50	1.9	50	82	4	120	27	24	20	28	1.99
29087847--29087899	11	4.5	11	80	19	63	1	18	0	79	0.83
29087848--29087887	13	3.2	13	92	3	64	0	17	0	82	0.67
29087849--29087900	17	2.9	17	86	13	70	1	17	0	80	0.80
29087847--29087899	6	9.0	6	80	12	65	1	18	0	79	0.83
29091563--29091601	20	2.0	20	85	10	53	66	7	2	23	1.30
29091783--29091833	25	2.0	25	81	7	59	54	1	5	37	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29093047--29093087	21	1.9	22	90	5	66	56	0	0	43	0.99
29093072--29093114	16	2.7	15	79	13	50	53	0	2	44	1.13
29096464--29096494	13	2.3	14	94	5	55	35	19	25	19	1.95
29096483--29096668	50	3.7	50	80	6	182	28	23	26	21	1.99
29098230--29098254	5	5.0	5	100	0	50	80	0	0	20	0.72
29102546--29102595	18	2.8	17	77	22	57	26	0	4	70	1.05
29102562--29102641	19	4.4	19	71	24	73	25	3	3	67	1.24
29103792--29103858	29	2.3	30	82	10	77	35	2	10	50	1.52
29106285--29106344	22	2.7	23	80	10	63	3	61	3	31	1.28
29108688--29108744	23	2.4	24	85	11	73	54	0	1	43	1.10
29109819--29110121	96	3.2	96	81	4	342	38	3	18	39	1.67
29109893--29110121	94	2.4	96	86	4	302	41	3	18	36	1.68
29109844--29110137	95	3.1	94	80	7	319	39	3	17	39	1.67
29110161--29110570	125	3.3	125	92	0	685	33	18	20	28	1.96
29113373--29113405	7	4.7	7	92	0	57	57	18	0	24	1.40
29113756--29114456	233	3.0	230	93	2	1152	30	26	16	26	1.96
29115025--29115054	11	2.7	11	94	0	51	40	0	30	30	1.57
29115725--29115764	21	1.9	21	85	10	55	12	32	0	55	1.38
29116040--29116080	12	3.5	12	75	18	50	7	12	21	58	1.58
29117678--29117750	27	2.8	26	82	11	96	19	8	12	60	1.57
29117732--29117762	15	2.1	15	93	0	53	19	9	12	58	1.62
29117747--29117785	10	3.9	10	79	0	51	15	10	17	56	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29118044--29118079	17	2.1	17	89	0	54	19	5	11	63	1.46
29118171--29118261	47	1.9	48	88	2	139	39	3	8	48	1.51
29118315--29118515	45	4.6	44	85	12	299	53	12	1	31	1.50
29118384--29118440	18	3.1	18	97	2	105	57	10	0	31	1.32
29118339--29118489	82	1.8	82	97	2	286	54	11	1	31	1.45
29118315--29118545	127	1.8	123	93	5	401	53	12	1	31	1.49
29118440--29118516	26	3.2	26	62	27	62	53	12	2	31	1.53
29118384--29118548	21	8.1	21	69	19	84	55	12	1	30	1.44
29120543--29120646	49	2.1	49	94	0	181	32	7	10	49	1.66
29122100--29122134	15	2.2	17	90	10	56	42	0	5	51	1.25
29122075--29122265	61	3.2	61	73	14	223	42	0	4	51	1.26
29122126--29122160	18	2.0	17	88	5	52	45	0	0	54	0.99
29122126--29122179	15	3.4	16	80	19	53	46	0	0	53	1.00
29122031--29122266	120	2.0	120	99	0	463	43	0	4	52	1.24
29122225--29122254	15	1.9	16	93	6	53	43	0	6	50	1.28
29133276--29133333	19	2.7	22	84	10	68	36	8	17	37	1.80
29133534--29133578	23	2.0	23	81	0	54	22	0	15	62	1.33
29133865--29133948	37	2.2	38	79	12	93	38	8	2	51	1.45
29134047--29134090	23	2.0	22	86	4	61	34	9	2	54	1.44
29139429--29140808	44	31.7	44	94	3	2395	25	18	26	29	1.98
29139816--29139880	34	1.9	34	100	0	130	21	24	26	27	1.99
29140686--29141048	88	4.1	88	68	11	231	28	19	25	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29140733--29141119	179	2.2	176	90	4	591	29	18	25	26	1.98
29140907--29141014	47	2.4	46	82	4	121	27	19	23	29	1.98
29140818--29141110	88	3.3	88	66	14	231	30	19	24	26	1.98
29155563--29155607	18	2.5	18	88	0	63	33	4	15	46	1.66
29160848--29161043	43	4.6	43	80	2	216	37	22	15	24	1.93
29160848--29161055	84	2.4	85	84	3	267	38	22	14	24	1.92
29161794--29161829	9	4.1	9	89	7	56	44	0	13	41	1.44
29174029--29174081	27	2.0	27	84	0	70	45	7	11	35	1.69
29183063--29183129	33	2.0	33	94	0	116	46	5	23	23	1.74
29192200--29192407	91	2.3	91	92	0	335	45	3	4	46	1.39
29192322--29192382	28	2.2	28	85	5	81	45	0	3	50	1.17
29192240--29192382	44	3.2	43	69	20	121	46	2	3	48	1.31
29192453--29192504	27	2.0	27	81	11	63	44	1	0	53	1.11
29192597--29192687	45	2.0	44	85	2	119	35	27	5	31	1.80
29192664--29192723	16	3.8	16	80	6	59	30	36	0	33	1.58
29192684--29192735	16	3.2	16	83	0	59	34	36	0	28	1.58
29193533--29193654	61	2.0	61	95	0	217	26	19	22	31	1.98
29195058--29195090	1	33.0	1	100	0	66	100	0	0	0	0.00
29195028--29195174	73	2.0	73	94	0	258	64	18	4	12	1.43
29195121--29195163	1	43.0	1	80	0	50	90	6	2	0	0.52
29195121--29195162	16	2.6	16	92	3	66	90	7	2	0	0.53
29201273--29201300	12	2.3	12	100	0	56	50	0	42	7	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29205954--29206001	25	1.9	25	100	0	96	52	14	12	20	1.74
29206295--29206332	19	2.0	19	89	0	58	71	2	18	7	1.23
29218847--29218877	9	3.4	9	90	0	53	25	12	22	38	1.90
29242402--29242443	22	2.1	19	86	13	57	45	0	0	54	0.99
29242402--29242440	16	2.5	15	83	8	51	46	0	0	53	1.00
29249510--29249580	27	2.6	27	88	4	99	18	21	22	38	1.94
29251903--29251988	27	3.2	27	93	0	145	44	22	18	15	1.87
29257361--29257391	11	2.8	11	90	0	53	38	0	0	61	0.96
29263616--29263972	46	8.2	46	83	12	475	34	15	20	29	1.94
29263652--29263852	36	5.0	36	72	21	168	35	14	21	27	1.93
29263616--29263944	82	3.9	82	87	7	496	34	14	21	28	1.93
29272364--29272428	22	3.0	22	81	4	78	44	18	20	16	1.87
29272420--29272686	32	8.4	32	76	6	204	37	24	19	18	1.94
29272446--29272686	96	2.5	96	79	5	254	36	25	19	17	1.94
29272440--29272674	64	3.7	64	80	5	244	36	25	20	18	1.95
29272945--29273656	27	26.5	27	82	3	749	23	21	20	34	1.97
29273525--29273700	27	6.5	26	82	10	187	20	20	20	38	1.94
29275213--29275241	12	2.3	13	94	5	51	68	0	17	13	1.20
29297018--29297065	20	2.5	20	82	3	62	20	20	2	56	1.53
29311111--29311168	20	2.8	21	78	5	64	36	17	22	24	1.95
29311235--29311259	12	2.1	12	100	0	50	8	8	24	60	1.52
29338090--29338165	40	1.9	40	100	0	152	27	31	21	19	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29345470--29346192	132	5.5	132	95	0	1275	29	20	24	25	1.99
29345652--29346100	44	10.2	44	62	11	157	30	20	24	25	1.99
29346131--29346258	66	1.9	66	95	3	231	23	25	23	27	2.00
29346247--29346559	44	7.1	44	63	13	124	28	20	25	25	1.99
29345999--29346390	198	2.0	198	95	1	714	27	22	24	25	2.00
29345867--29346522	330	2.0	330	95	0	1188	28	21	24	25	1.99
29345735--29346612	462	1.9	462	94	0	1558	28	21	24	25	1.99
29346197--29346612	132	3.2	132	96	0	751	28	21	25	24	1.99
29352078--29352167	47	1.9	47	97	0	171	25	26	23	24	2.00
29352551--29352960	40	10.2	40	99	0	802	22	27	20	30	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144