genome.fa.s11.2.7.7.80.10.50.1000.41.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr6
Parameters: 2 7 7 80 10 50 1000
Length:  44797108

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   

This is table  41  of  144  ( 17221 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12421685--12421748	24	2.7	24	92	0	110	32	15	18	32	1.93
12424542--12424616	23	3.4	22	74	7	64	6	2	26	64	1.32
12427194--12427247	23	2.3	23	80	3	63	81	0	7	11	0.87
12438951--12438995	21	2.2	20	80	11	54	26	22	4	46	1.70
12438958--12439004	21	2.1	22	92	7	78	19	23	4	53	1.63
12443209--12443280	37	2.0	36	86	2	99	47	19	20	12	1.82
12449705--12449742	3	12.7	3	100	0	76	0	34	0	65	0.93
12456567--12456597	3	10.3	3	100	0	62	32	0	0	67	0.91
12457135--12457160	6	4.3	6	100	0	52	53	0	30	15	1.42
12457563--12457587	2	12.5	2	100	0	50	0	48	0	52	1.00
12458586--12458679	46	2.0	46	85	0	125	32	19	7	40	1.79
12460515--12460552	17	2.2	18	86	9	53	18	0	2	78	0.86
12463746--12463782	19	1.9	19	88	0	56	51	0	10	37	1.37
12465034--12465071	20	1.9	20	88	0	58	18	2	23	55	1.55
12470214--12470323	21	5.3	21	74	12	102	46	16	20	17	1.84
12470214--12470324	42	2.7	42	83	2	136	46	16	19	17	1.84
12470462--12470506	17	2.6	17	76	13	56	51	17	4	26	1.65
12471330--12471398	21	3.3	21	79	0	84	15	15	17	50	1.78
12471584--12471625	21	2.0	20	90	4	66	35	4	30	28	1.78
12473708--12473750	11	4.1	10	79	8	50	72	9	0	18	1.11
12474580--12474635	24	2.2	24	84	6	67	33	10	8	46	1.70
12483716--12483779	18	3.5	17	73	21	51	53	1	1	43	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12484138--12484174	3	12.3	3	100	0	74	64	0	0	35	0.94
12486592--12486749	21	7.5	21	67	8	106	43	18	23	14	1.87
12486596--12486750	42	3.7	42	85	6	215	45	18	22	14	1.85
12489243--12489371	66	2.0	66	95	0	231	52	13	16	17	1.74
12491180--12491337	21	7.5	21	67	8	106	43	18	23	14	1.87
12491184--12491338	42	3.7	42	85	6	215	45	18	22	14	1.85
12493831--12493959	66	2.0	66	95	0	231	52	13	16	17	1.74
12496620--12496689	21	3.3	21	75	0	77	47	18	18	15	1.83
12496599--12496749	42	3.6	42	85	1	180	46	19	19	15	1.84
12498633--12498807	49	3.6	48	75	7	147	34	16	27	21	1.95
12499074--12499183	58	1.9	58	86	3	159	36	21	13	28	1.92
12499072--12499205	58	2.3	58	79	5	146	35	25	13	26	1.93
12508534--12508618	43	2.0	43	83	0	107	42	22	16	18	1.89
12512854--12512897	9	4.9	9	86	8	63	43	4	0	52	1.22
12512869--12512900	8	3.9	8	95	4	55	46	0	0	53	1.00
12515430--12515594	41	4.0	41	86	3	215	20	29	22	27	1.99
12522137--12522177	15	2.6	17	77	18	52	36	2	0	60	1.10
12526031--12526185	21	7.4	21	68	7	64	17	20	17	45	1.86
12526031--12526185	84	1.8	84	88	0	238	17	20	17	45	1.86
12526031--12526187	42	3.7	42	79	0	161	17	20	17	44	1.87
12530240--12530353	43	2.7	43	73	2	122	27	28	17	27	1.98
12532097--12532128	10	3.2	10	100	0	64	81	0	0	18	0.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12540417--12540668	101	2.5	101	80	1	283	28	23	15	32	1.95
12540575--12540639	33	1.9	34	84	3	87	29	24	13	32	1.94
12561330--12561650	41	7.8	41	75	5	245	15	23	23	36	1.94
12561329--12561633	82	3.7	82	87	2	398	15	22	23	38	1.93
12563559--12563595	10	3.7	10	85	0	56	43	0	16	40	1.48
12564250--12564284	10	3.5	10	92	0	61	42	0	14	42	1.45
12564354--12564405	27	1.9	27	88	0	77	40	0	9	50	1.35
12564429--12564594	84	2.0	84	92	0	278	33	18	17	30	1.94
12565683--12565719	11	3.4	11	96	0	65	37	2	5	54	1.38
12566474--12566546	37	2.0	37	94	0	128	9	12	16	61	1.56
12574493--12574550	30	1.9	30	96	0	107	39	24	24	12	1.89
12574563--12574733	66	2.6	65	87	4	227	40	19	27	12	1.88
12574704--12574816	21	5.4	21	86	0	91	34	17	43	4	1.69
12574715--12574816	42	2.4	42	86	0	132	34	17	44	3	1.68
12574935--12575117	43	4.3	43	80	2	188	21	19	30	28	1.97
12575299--12575360	31	1.9	33	90	6	101	29	24	25	20	1.99
12581430--12581454	6	4.2	6	100	0	50	0	64	0	36	0.94
12582913--12582969	30	1.9	30	85	7	80	35	0	1	63	1.05
12583936--12583975	20	2.0	20	90	0	62	30	10	10	50	1.69
12583921--12583987	34	1.9	35	87	3	100	32	8	11	46	1.72
12584795--12584848	27	2.0	27	85	3	74	27	1	3	66	1.19
12591434--12591478	3	15.0	3	95	0	81	31	33	2	33	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12595814--12595842	15	2.0	15	93	6	51	65	0	0	34	0.93
12597668--12597698	7	4.4	7	95	0	53	51	9	0	38	1.35
12597770--12597811	8	5.1	8	78	16	50	40	2	0	57	1.12
12609300--12609593	139	2.1	139	100	0	588	45	2	10	40	1.53
12609580--12609620	3	13.7	3	85	10	57	36	0	2	60	1.10
12609568--12609620	25	2.0	25	82	10	61	39	0	3	56	1.17
12609583--12609618	19	1.9	18	88	5	54	36	0	2	61	1.11
12610102--12610136	17	2.1	17	89	5	54	45	0	20	34	1.51
12612973--12613008	18	2.0	18	100	0	72	22	33	11	33	1.89
12621900--12621963	26	2.4	26	94	5	110	26	23	7	42	1.81
12629783--12629833	26	2.0	24	88	7	75	43	9	5	41	1.62
12631902--12631939	19	2.1	19	85	9	53	42	7	0	50	1.31
12632286--12632327	22	1.9	22	85	9	59	19	4	7	69	1.31
12637031--12637063	10	3.4	10	87	8	50	78	0	0	21	0.75
12640651--12640682	7	4.7	7	96	3	57	46	0	0	53	1.00
12642229--12642294	13	5.1	13	75	0	69	43	18	1	36	1.59
12643553--12643819	104	2.6	104	93	1	446	30	30	20	19	1.97
12646649--12646700	24	2.2	24	89	0	77	55	9	1	32	1.43
12647373--12647562	95	2.0	97	90	2	303	31	17	13	36	1.89
12649347--12649394	24	2.0	25	84	12	64	54	10	10	25	1.66
12651708--12651972	103	2.6	104	90	3	417	29	29	20	19	1.97
12652300--12652364	30	2.2	29	81	8	76	30	27	6	35	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12652307--12652364	30	1.9	30	85	0	80	31	24	6	37	1.82
12654347--12654504	80	2.0	81	97	1	300	61	9	2	26	1.40
12655735--12655781	17	2.8	17	86	0	58	2	17	36	44	1.60
12661081--12661140	30	2.0	31	86	3	86	40	0	40	20	1.52
12661513--12661560	12	4.3	12	75	17	50	60	0	2	37	1.09
12661512--12661551	21	1.9	21	94	0	71	62	0	2	35	1.09
12661544--12661590	17	2.8	17	83	0	58	61	0	0	38	0.96
12661892--12661920	14	2.0	15	93	6	51	62	0	0	37	0.96
12666895--12666929	18	2.0	18	94	5	63	60	22	0	17	1.37
12667822--12667864	11	3.9	11	75	0	50	23	13	9	53	1.69
12694938--12695132	97	2.0	97	95	0	354	35	21	12	30	1.91
12699106--12699133	4	7.0	4	100	0	56	25	50	0	25	1.50
12705085--12705116	3	10.7	3	100	0	64	68	0	0	31	0.90
12706829--12706866	20	1.9	20	84	10	51	50	0	0	50	1.00
12708093--12708326	129	1.8	129	94	0	414	35	26	12	25	1.92
12708322--12708354	17	1.9	17	100	0	66	48	0	9	42	1.35
12714958--12714998	20	2.0	20	86	9	57	48	7	4	39	1.52
12715839--12715892	22	2.4	23	81	3	65	22	3	3	70	1.19
12715986--12716025	14	2.9	14	80	0	53	37	7	15	40	1.75
12716009--12716048	20	2.0	20	90	0	62	30	10	10	50	1.69
12715994--12716060	34	1.9	35	87	3	100	32	8	11	46	1.72
12727143--12727167	5	5.0	5	100	0	50	40	20	20	20	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12733749--12734025	92	3.0	92	97	0	509	56	15	12	15	1.68
12735304--12735382	40	2.0	40	92	0	131	59	5	6	29	1.43
12735599--12735636	17	2.2	18	85	4	51	36	5	26	31	1.79
12740457--12740507	23	2.3	23	83	6	61	45	5	0	49	1.26
12740467--12740516	23	2.1	23	82	10	57	50	8	0	42	1.32
12740509--12740536	14	2.0	14	100	0	56	57	0	0	42	0.99
12740594--12740638	20	2.1	22	84	8	58	44	2	6	46	1.42
12750219--12750288	33	2.1	33	89	0	104	34	17	8	40	1.80
12764794--12764827	2	17.0	2	100	0	68	50	0	50	0	1.00
12766752--12766792	21	2.0	21	90	4	66	56	2	2	39	1.26

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144