genome.fa.s11.2.7.7.80.10.50.1000.62.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr6
Parameters: 2 7 7 80 10 50 1000
Length:  44797108

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   

This is table  62  of  144  ( 17221 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18835218--18835265	18	2.7	18	80	0	51	27	6	4	62	1.38
18835313--18835368	27	2.1	26	80	12	60	37	10	1	50	1.48
18835336--18835385	16	3.0	17	75	13	50	36	10	0	54	1.34
18835349--18835392	16	2.6	17	82	7	54	38	9	0	52	1.33
18835402--18835476	35	2.1	35	85	9	100	37	10	4	48	1.57
18842308--18842349	11	3.8	11	81	6	50	16	2	4	76	1.07
18843833--18843885	21	2.5	21	78	0	61	18	33	32	15	1.92
18849100--18849130	16	1.9	16	93	0	53	32	25	16	25	1.96
18851958--18852016	13	4.4	14	75	16	63	71	0	0	28	0.87
18851960--18852016	20	3.0	20	85	14	84	70	0	0	29	0.88
18851958--18852016	7	8.9	7	75	20	56	71	0	0	28	0.87
18853116--18853140	11	2.3	11	100	0	50	16	24	0	60	1.36
18853415--18853537	41	2.9	42	84	8	162	32	25	17	25	1.96
18853415--18853537	42	2.9	42	83	12	148	32	25	17	25	1.96
18862203--18862493	145	2.0	145	100	0	582	29	20	25	24	1.99
18863175--18863218	20	2.2	20	96	4	81	59	6	9	25	1.53
18879577--18879624	19	2.5	19	80	9	62	50	4	0	45	1.21
18880991--18881434	44	10.3	44	69	10	254	25	20	21	31	1.98
18881084--18881434	85	4.1	84	70	10	251	27	20	21	31	1.98
18880972--18881545	129	4.5	129	88	2	777	27	18	21	31	1.97
18880950--18881576	258	2.5	252	88	2	896	27	19	21	32	1.97
18881629--18882587	50	19.4	50	69	4	492	25	21	21	32	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18881631--18882308	100	6.8	100	86	0	793	25	20	21	32	1.98
18882073--18882542	242	1.9	242	87	1	683	25	21	21	32	1.97
18882174--18882440	142	1.9	142	86	1	383	24	20	20	34	1.97
18885321--18885353	9	3.8	9	88	4	50	42	15	21	21	1.89
18889075--18889796	100	7.2	100	86	1	867	32	21	21	24	1.98
18889087--18889769	50	13.7	50	68	3	316	31	22	21	24	1.98
18889939--18891087	129	8.9	129	88	2	1457	33	21	19	25	1.97
18889800--18891085	85	14.9	85	69	14	442	32	21	19	26	1.97
18889854--18890961	44	25.6	44	69	11	472	32	21	19	25	1.97
18893059--18893104	24	2.0	24	91	4	76	15	0	4	80	0.86
18900174--18900661	50	9.8	50	72	2	352	32	20	20	25	1.97
18900164--18900667	100	5.0	100	86	0	668	32	20	20	26	1.97
18900799--18900898	45	2.2	44	83	1	119	26	20	28	26	1.99
18900836--18901124	44	6.6	44	73	7	178	30	20	21	27	1.98
18903200--18903249	21	2.3	21	81	18	59	22	8	6	64	1.43
18914999--18915046	23	2.1	23	100	0	96	39	14	12	33	1.84
18915450--18915578	60	2.2	60	87	2	179	41	20	26	11	1.87
18921782--18921833	20	2.7	21	74	17	58	61	0	3	34	1.14
18921782--18921832	18	2.7	19	72	6	50	60	0	3	35	1.15
18921907--18921983	14	5.0	15	71	20	52	42	14	9	33	1.77
18921923--18921962	20	2.0	20	90	0	62	50	12	10	27	1.72
18921911--18921977	34	1.9	35	90	3	109	46	13	8	31	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18927600--18927653	23	2.4	23	82	11	67	70	0	5	24	1.08
18935682--18935724	22	2.0	22	86	8	63	27	6	9	55	1.57
18940466--18940499	11	3.2	11	87	8	52	58	0	0	41	0.98
18940462--18940509	21	2.5	20	77	12	55	60	0	0	39	0.97
18947087--18947248	2	81.0	2	100	0	324	0	0	50	50	1.00
18947586--18947628	18	2.4	18	88	7	61	53	2	27	16	1.55
18950009--18950036	13	2.2	13	100	0	56	46	7	14	32	1.71
18957484--18957573	38	2.4	38	90	0	135	15	18	26	38	1.91
18959668--18959715	9	5.2	9	75	5	51	31	4	41	22	1.73
18959917--18959972	29	1.9	29	85	7	78	60	16	3	19	1.49
18962677--18962727	22	2.5	20	78	9	57	58	19	3	17	1.54
18974496--18974571	24	3.2	23	76	9	73	48	0	1	50	1.09
18974510--18974553	12	3.7	11	80	14	52	52	0	2	45	1.13
18974533--18974570	14	2.4	17	87	12	55	47	0	0	52	1.00
18974785--18974816	17	2.0	17	88	11	50	62	15	21	0	1.32
18975490--18975518	3	9.7	3	100	0	58	34	0	0	65	0.93
18975750--18975825	25	3.0	25	77	12	75	47	1	25	26	1.60
18975957--18976052	39	2.5	39	80	6	108	21	22	28	27	1.99
18977806--18977838	16	2.1	16	88	5	50	57	0	3	39	1.14
18977958--18978009	20	2.7	20	82	5	63	53	0	0	46	1.00
18994469--18994717	50	4.8	50	86	4	311	20	29	23	26	1.99
18994468--18994717	100	2.4	103	88	6	355	20	29	23	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18994812--18994842	13	2.4	13	94	0	53	54	12	0	32	1.38
18995055--18995112	30	1.9	31	82	6	75	27	22	6	43	1.79
19007536--19007575	18	2.1	20	86	9	57	32	7	22	37	1.82
19011851--19011953	49	2.1	49	85	10	140	33	23	11	31	1.90
19015515--19015627	41	2.8	41	91	2	156	30	30	21	16	1.95
19015734--19015975	96	2.5	97	93	2	423	38	15	7	38	1.76
19015734--19015959	47	4.7	47	80	4	236	38	15	7	39	1.74
19018868--19018998	41	3.2	41	85	4	140	29	23	19	28	1.98
19020617--19020665	25	2.0	25	88	8	73	51	2	0	46	1.12
19025747--19025851	41	2.6	41	86	6	133	27	25	20	26	1.99
19025787--19025882	41	2.3	41	87	1	129	34	21	16	27	1.95
19027027--19027075	25	2.0	25	88	8	73	51	2	0	46	1.12
19033461--19033489	14	2.0	15	93	6	51	68	6	0	24	1.13
19036908--19036939	12	2.7	12	100	0	64	31	15	0	53	1.43
19042663--19042688	12	2.2	12	100	0	52	38	19	7	34	1.80
19044216--19044251	15	2.4	15	90	0	54	44	2	2	50	1.31
19049385--19049480	31	3.1	31	93	1	165	32	9	12	45	1.74
19051374--19051411	18	2.1	18	85	9	51	57	0	2	39	1.12
19051511--19051571	24	2.5	24	80	15	72	50	3	4	40	1.40
19051518--19051642	10	12.3	10	67	25	50	46	5	2	45	1.39
19051953--19052015	15	4.2	15	74	13	58	46	1	3	49	1.27
19051956--19052036	18	4.1	19	79	9	83	46	1	4	46	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19051956--19052017	25	2.5	24	80	17	58	46	1	3	48	1.28
19053434--19053468	16	2.2	16	89	0	52	34	20	2	42	1.66
19055796--19056125	42	7.8	42	91	1	457	20	21	21	36	1.95
19056456--19056500	21	2.1	21	91	0	72	4	48	22	24	1.68
19057999--19058040	18	2.5	16	88	7	57	38	2	21	38	1.67
19058055--19058445	9	43.4	9	79	7	373	33	1	13	51	1.50
19058055--19058452	63	6.5	63	85	8	534	33	1	13	51	1.49
19061225--19061752	260	2.0	260	92	0	869	34	20	18	26	1.96
19061615--19061852	115	2.1	114	92	2	388	31	19	19	28	1.97
19062303--19062384	7	12.0	6	78	15	56	47	31	1	19	1.57
19062322--19062382	21	2.9	21	76	9	70	47	34	1	16	1.56
19062299--19062387	14	6.5	13	75	15	81	48	31	1	19	1.56
19062514--19062563	20	2.5	20	86	0	73	46	40	0	14	1.44
19063133--19063275	74	1.9	76	85	5	202	30	25	25	19	1.98
19063375--19063525	72	2.1	72	81	4	171	31	24	21	23	1.98
19066341--19066390	18	2.8	18	84	6	66	24	0	44	32	1.54
19077729--19077937	92	2.3	91	86	5	278	45	3	3	46	1.39
19077865--19077912	26	1.9	25	84	16	64	45	0	2	52	1.12
19088412--19088452	14	2.9	15	82	13	52	46	0	0	53	1.00
19088563--19088597	18	2.0	17	88	5	52	45	0	0	54	0.99
19088396--19088710	156	2.0	156	93	1	542	48	5	3	43	1.42
19088833--19088868	16	2.2	16	100	0	72	38	36	0	25	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19095825--19095850	3	8.7	3	100	0	52	0	30	0	69	0.89
19096210--19096257	16	2.7	19	71	18	57	45	6	2	45	1.40
19096224--19096262	16	2.4	16	86	0	51	43	5	5	46	1.48
19096914--19096948	16	2.2	16	94	0	61	42	5	25	25	1.77
19097139--19097215	26	2.9	27	73	19	72	48	2	0	49	1.15
19097169--19097197	15	1.9	15	100	0	58	55	0	0	44	0.99
19098378--19098508	64	2.0	64	97	0	244	32	16	24	25	1.96
19104890--19104935	3	15.3	3	100	0	92	67	0	0	32	0.91
19105550--19105592	17	2.5	17	80	3	50	67	6	20	4	1.33
19105668--19105699	6	5.3	6	100	0	64	84	0	0	15	0.63

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144