genome.fa.s11.2.7.7.80.10.50.1000.66.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr6
Parameters: 2 7 7 80 10 50 1000
Length:  44797108

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   

This is table  66  of  144  ( 17221 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19998499--19998535	18	2.0	19	85	15	51	45	8	5	40	1.56
19999663--19999720	25	2.3	25	87	0	80	43	22	12	22	1.86
20001326--20001360	17	2.1	16	89	5	52	31	0	5	62	1.18
20005533--20005694	42	3.9	41	85	2	198	27	19	21	31	1.98
20005534--20005694	83	1.9	84	83	6	211	27	19	21	31	1.97
20006002--20006043	21	2.0	22	90	4	68	30	0	21	47	1.51
20006793--20006826	16	2.1	16	88	5	50	70	2	2	23	1.15
20007506--20007560	17	3.0	20	71	20	64	21	3	18	56	1.57
20007551--20007575	13	1.9	13	100	0	50	28	8	8	56	1.57
20008128--20008168	2	20.5	2	100	0	82	51	0	48	0	1.00
20011861--20012159	43	7.0	43	86	1	411	23	16	34	25	1.95
20015796--20016142	27	12.9	27	88	0	480	38	18	19	24	1.93
20015796--20016182	81	4.8	81	86	1	510	37	18	19	24	1.94
20016107--20016225	27	4.4	27	90	3	152	36	16	21	25	1.94
20015786--20016225	54	8.2	54	81	9	215	38	18	19	24	1.93
20016213--20016247	17	2.1	17	100	0	70	48	11	22	17	1.79
20016187--20016270	43	1.9	44	85	2	116	44	17	17	20	1.88
20016316--20016373	24	2.4	24	94	0	98	18	6	25	48	1.73
20016321--20016363	11	3.7	11	76	11	50	13	6	27	51	1.67
20016442--20016498	27	2.1	27	84	12	73	21	26	21	31	1.98
20016545--20016683	32	4.4	32	83	0	154	20	17	21	40	1.92
20016545--20016669	64	2.0	64	86	0	178	20	18	21	39	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20018560--20018608	24	2.0	24	100	0	98	51	12	8	28	1.68
20026307--20026730	211	2.0	211	98	0	812	32	16	17	34	1.92
20035213--20035250	20	1.9	20	88	0	58	31	10	2	55	1.48
20053508--20053570	25	2.5	26	81	5	74	28	3	4	63	1.30
20057517--20057556	12	3.3	12	89	0	62	80	2	17	0	0.83
20057505--20057557	24	2.2	23	83	9	70	81	5	13	0	0.86
20057524--20057557	17	1.9	18	88	5	52	79	2	17	0	0.86
20057894--20058089	108	1.8	108	86	2	286	25	16	11	46	1.80
20058534--20058700	87	1.9	87	87	0	244	29	22	23	24	1.99
20058555--20059580	88	11.7	88	84	1	1141	28	23	22	24	1.99
20059189--20059580	44	8.9	44	69	9	188	28	24	22	24	1.99
20059577--20059883	132	2.3	132	93	0	515	28	18	25	27	1.98
20059848--20060171	40	7.8	40	79	13	345	32	23	21	22	1.98
20059848--20060171	126	2.6	125	88	5	503	32	23	21	22	1.98
20059848--20060193	84	4.2	84	86	5	438	33	23	20	22	1.97
20074663--20074716	5	11.0	5	82	7	58	77	1	1	18	0.95
20078426--20078456	12	2.6	12	94	0	53	58	12	0	29	1.35
20084618--20084823	45	4.6	45	88	5	303	34	15	21	28	1.94
20084618--20084823	91	2.3	90	91	4	328	34	15	21	28	1.94
20103377--20103402	13	2.0	13	100	0	52	46	7	7	38	1.61
20104428--20104523	47	2.0	47	95	0	174	45	2	5	46	1.37
20105064--20105106	21	2.0	21	82	8	52	32	0	6	60	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20105085--20105186	37	2.8	36	80	7	89	46	1	2	49	1.28
20105295--20105402	44	2.6	39	77	19	112	38	25	2	32	1.71
20105313--20105400	45	2.0	44	91	6	142	38	27	3	30	1.73
20109643--20109688	22	2.1	22	100	0	92	58	13	4	23	1.52
20132007--20132068	30	2.1	30	96	0	115	40	14	9	35	1.79
20133505--20133635	27	4.9	27	88	0	181	28	28	9	34	1.88
20138140--20138225	40	2.2	40	89	0	127	36	18	12	32	1.89
20158252--20158297	10	4.7	10	91	2	67	71	4	2	21	1.14
20158262--20158309	25	2.0	24	84	12	62	75	6	0	18	1.01
20160009--20160387	50	7.6	50	67	1	238	25	26	20	28	1.99
20159979--20160381	100	4.0	100	88	1	549	26	24	20	28	1.99
20160580--20160752	88	2.0	88	86	2	240	27	26	19	26	1.99
20161997--20162045	22	2.2	23	92	3	82	16	16	0	67	1.24
20162006--20162059	25	2.3	22	84	9	63	18	18	0	62	1.32
20162560--20162599	12	3.5	12	84	15	50	2	12	5	80	0.98
20167689--20167722	3	11.7	3	87	6	52	70	0	0	29	0.87
20170898--20172309	469	3.0	469	96	0	2563	26	17	25	30	1.97
20173462--20173492	11	2.8	11	90	0	53	32	0	0	67	0.91
20173616--20173678	30	2.1	30	93	0	108	57	14	3	25	1.52
20176337--20176389	20	2.7	18	75	16	52	64	0	3	32	1.12
20185105--20185172	35	1.9	35	84	0	91	42	13	8	35	1.75
20185567--20185645	21	3.8	21	75	6	70	35	1	1	62	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20185559--20185667	42	2.7	41	77	13	118	39	0	0	58	1.10
20187448--20187480	5	6.8	5	86	6	50	78	0	0	21	0.75
20187235--20187785	299	1.9	292	79	11	620	40	12	13	33	1.82
20190993--20191092	28	3.6	28	88	0	146	32	11	26	31	1.91
20196674--20196706	17	1.9	17	100	0	66	36	15	18	30	1.91
20203070--20203112	21	2.0	21	90	0	68	37	18	27	16	1.92
20204951--20204995	22	2.0	22	86	4	63	60	24	4	11	1.49
20206102--20206132	7	4.4	7	95	0	53	3	0	9	87	0.66
20208397--20208436	16	2.4	16	87	4	53	67	5	0	27	1.11
20208687--20208727	3	13.7	3	100	0	82	68	0	0	31	0.90
20208815--20208893	27	2.9	27	83	7	106	18	22	34	24	1.97
20212118--20212273	62	2.5	62	93	0	267	37	7	7	47	1.60
20212617--20212716	33	3.0	33	73	5	112	28	20	37	15	1.92
20212840--20212875	18	2.0	18	88	0	54	11	30	27	30	1.91
20213508--20213542	14	2.5	14	90	0	52	40	8	20	31	1.82
20215169--20215199	16	1.9	16	93	0	53	67	9	0	22	1.19
20220252--20220309	29	2.0	29	86	3	80	39	12	6	41	1.69
20228988--20229197	105	2.0	105	96	1	386	39	22	11	26	1.88
20229401--20229461	3	20.3	3	90	6	97	31	34	1	32	1.68
20235037--20235075	19	2.1	19	85	9	53	25	5	0	69	1.09
20235148--20235191	20	2.3	19	80	4	52	52	0	0	47	1.00
20247650--20247709	27	2.2	27	93	3	102	30	18	5	46	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20247807--20247851	20	2.2	20	84	0	54	26	20	4	48	1.68
20252609--20252647	14	2.6	16	84	12	55	56	2	0	41	1.13
20254014--20254107	49	1.9	49	91	4	154	37	14	1	46	1.52
20259506--20259548	23	1.9	22	86	13	61	32	2	2	62	1.20
20268245--20268274	7	4.4	7	95	4	53	53	0	0	46	1.00
20280002--20280067	22	3.0	21	80	6	69	37	18	25	18	1.93
20280044--20280122	25	3.2	25	88	0	113	39	20	17	22	1.92
20288029--20288096	32	2.2	30	86	5	100	38	1	2	57	1.23
20297276--20297315	21	1.9	21	90	10	64	50	0	0	50	1.00
20315554--20315605	24	2.2	24	89	0	77	55	9	1	32	1.43
20317523--20317574	24	2.2	24	89	0	77	55	9	1	32	1.43
20326598--20326676	19	4.1	19	66	26	58	24	11	17	46	1.81
20333364--20333413	13	3.8	13	81	0	64	38	4	20	38	1.71
20333363--20333471	26	4.2	26	72	6	85	42	2	19	35	1.66
20335030--20335065	9	4.2	8	89	10	54	58	0	13	27	1.36
20339152--20339259	36	3.0	35	86	5	146	18	12	28	39	1.88
20342016--20342095	41	1.9	42	92	2	135	25	12	1	61	1.39
20342158--20342211	20	2.7	20	94	0	90	16	31	3	48	1.64
20343713--20343770	23	2.5	23	83	11	73	44	6	0	48	1.29
20343713--20343777	23	2.7	25	75	15	66	43	6	0	50	1.27
20343925--20343971	15	3.1	15	78	6	51	48	0	0	51	1.00
20343931--20343973	21	2.0	22	90	4	70	46	0	0	53	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20343936--20343980	21	2.1	21	79	0	54	51	0	0	48	1.00
20347757--20347783	10	2.7	10	100	0	54	33	0	0	66	0.92
20350870--20350919	18	2.8	18	96	0	91	20	6	26	48	1.72
20351188--20351401	116	1.8	116	90	2	349	27	14	17	40	1.88
20356573--20356643	36	2.0	36	100	0	142	19	16	9	53	1.71
20357283--20357360	31	2.5	31	89	0	111	28	30	25	15	1.96
20358581--20358617	18	2.1	18	90	10	58	32	0	5	62	1.18
20359998--20360036	18	2.2	17	86	13	53	33	0	20	46	1.51
20360262--20360359	23	4.3	23	89	2	153	21	21	25	31	1.98
20360264--20360352	45	2.0	45	93	0	151	20	22	25	31	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144