genome.fa.s11.2.7.7.80.10.50.1000.97.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr6
Parameters: 2 7 7 80 10 50 1000
Length:  44797108

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   

This is table  97  of  144  ( 17221 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29644323--29644451	50	2.6	50	82	0	150	28	24	29	17	1.97
29649103--29649357	27	9.5	27	81	2	237	41	21	14	21	1.89
29657291--29657553	40	6.6	40	88	3	325	24	20	27	26	1.99
29657330--29657588	80	3.3	80	85	3	256	25	20	27	25	1.99
29665242--29665504	40	6.6	40	88	3	325	24	20	27	26	1.99
29665281--29665539	80	3.3	80	85	3	256	25	20	27	25	1.99
29670858--29671050	51	3.8	50	84	4	244	31	24	15	29	1.96
29674952--29675030	37	2.1	37	90	0	122	25	31	18	24	1.98
29675152--29675372	49	4.6	44	92	3	217	30	29	9	30	1.89
29675148--29675372	47	4.7	48	96	1	373	30	29	9	30	1.88
29675148--29675372	96	2.3	95	93	3	371	30	29	9	30	1.88
29675281--29675359	25	3.3	25	64	10	74	34	27	5	32	1.79
29682842--29682951	24	4.7	24	78	7	118	48	4	25	21	1.69
29689255--29689658	27	15.0	28	78	6	100	20	17	20	42	1.90
29689266--29689658	54	7.3	53	81	2	462	19	17	19	42	1.89
29689266--29689641	108	3.5	108	98	0	725	19	17	20	42	1.89
29693391--29693483	24	3.9	24	77	1	98	47	6	25	20	1.74
29702282--29702346	30	2.2	30	83	10	80	53	1	10	33	1.45
29704360--29704425	30	2.3	28	76	7	69	51	0	3	45	1.16
29704651--29704682	11	3.0	11	95	4	57	93	0	6	0	0.34
29704651--29704686	17	2.1	17	94	0	63	91	0	8	0	0.41
29705132--29705170	6	6.2	6	82	11	51	33	2	0	64	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29705123--29705187	25	2.5	26	78	11	73	32	3	1	63	1.19
29708450--29708540	48	1.9	47	88	2	137	39	28	13	18	1.88
29708756--29708793	15	2.4	16	82	4	51	31	23	10	34	1.89
29710802--29710832	16	1.9	16	93	0	53	61	22	3	12	1.46
29711022--29711066	22	2.0	22	87	8	65	51	20	0	28	1.48
29713975--29714023	25	2.0	25	88	8	73	38	18	12	30	1.87
29713900--29714013	50	2.3	50	78	3	122	36	21	14	27	1.92
29715566--29715672	44	2.4	44	85	0	142	51	23	14	11	1.73
29719782--29719821	21	2.0	20	85	14	55	22	10	32	35	1.87
29722781--29722822	21	2.0	22	85	4	59	59	11	9	19	1.59
29723171--29723209	18	2.2	18	90	0	60	51	7	2	38	1.44
29725769--29725829	13	4.7	13	75	0	59	31	4	19	44	1.72
29725769--29725827	26	2.3	26	81	0	73	30	5	18	45	1.71
29731181--29731226	23	2.0	23	100	0	92	30	21	21	26	1.99
29731185--29731236	23	2.3	23	89	0	77	32	26	19	21	1.97
29740835--29741345	266	1.9	268	87	1	749	27	20	25	27	1.99
29741361--29741527	44	3.8	44	73	7	117	28	20	22	28	1.99
29742729--29742762	11	3.1	11	86	0	50	23	32	32	11	1.91
29751144--29751192	12	4.0	12	86	5	71	71	8	2	18	1.21
29751147--29751195	13	3.8	13	89	2	73	73	6	2	18	1.14
29751234--29751290	16	3.7	15	86	6	78	61	5	10	22	1.48
29763436--29763489	27	2.1	27	83	10	69	9	31	1	57	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29763889--29763922	12	2.8	12	95	0	59	17	29	41	11	1.85
29763992--29764023	15	2.0	17	88	11	50	6	6	21	65	1.38
29766208--29767513	659	2.0	658	90	1	2066	27	14	17	40	1.88
29768568--29768621	27	2.1	27	83	10	69	9	31	1	57	1.41
29769021--29769054	12	2.8	12	95	0	59	17	29	41	11	1.85
29769124--29769155	15	2.0	17	88	11	50	6	6	21	65	1.38
29776004--29776049	24	1.9	24	95	0	83	47	15	8	28	1.74
29780371--29780683	157	2.0	156	89	0	482	30	20	13	36	1.91
29782048--29782178	50	2.6	50	84	3	165	22	18	28	31	1.97
29782050--29782210	51	3.2	50	81	6	200	22	16	28	32	1.96
29782232--29782319	45	2.0	45	90	0	140	26	15	22	35	1.94
29785319--29785361	9	4.8	9	82	0	50	58	4	0	37	1.19
29785588--29785618	16	2.0	15	93	6	53	45	3	0	51	1.17
29807342--29807397	27	2.1	27	100	0	112	41	3	17	37	1.67
29809789--29809981	51	3.8	51	81	2	219	31	24	14	29	1.95
29812154--29812432	50	5.5	50	83	3	166	24	27	20	27	1.99
29812203--29812432	50	4.5	50	86	3	262	23	28	21	26	1.99
29812776--29812833	30	1.9	30	85	0	80	32	25	3	37	1.73
29817942--29817992	23	2.2	23	92	0	84	27	9	21	41	1.84
29821761--29821981	51	4.3	52	79	8	240	26	16	27	29	1.97
29821761--29821981	101	2.2	102	83	4	268	26	16	27	29	1.97
29823478--29823507	14	2.1	14	93	0	51	36	16	0	46	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29829752--29829857	21	5.0	21	72	0	95	39	16	25	17	1.91
29829722--29829862	42	3.4	42	81	2	140	41	17	22	17	1.90
29835872--29836043	40	4.3	40	88	2	222	25	27	21	25	1.99
29835874--29836096	40	5.6	39	83	5	216	25	27	21	25	1.99
29835872--29836096	80	2.8	79	80	7	240	25	27	21	25	1.99
29836028--29836105	40	1.9	41	82	10	97	26	28	20	24	1.99
29840594--29840633	21	1.9	21	89	0	62	50	25	12	12	1.75
29840623--29840745	42	3.0	41	78	8	131	43	15	23	17	1.88
29840623--29840676	21	2.6	21	72	0	54	42	16	25	14	1.87
29845040--29845092	18	2.9	18	82	0	61	43	26	11	18	1.84
29846510--29846551	21	2.0	21	90	0	66	30	4	19	45	1.71
29846644--29846695	19	2.7	19	77	11	61	46	9	9	34	1.69
29847751--29847816	31	2.2	31	91	2	107	53	3	0	43	1.16
29851222--29851267	20	2.3	20	92	0	74	36	15	4	43	1.66
29853854--29854137	43	6.7	43	74	11	237	34	23	17	25	1.96
29853861--29854175	43	7.5	41	74	10	222	34	23	16	24	1.95
29853854--29854175	85	3.8	85	88	0	430	34	23	17	24	1.96
29859070--29859111	8	5.5	8	80	11	52	35	16	0	47	1.47
29859070--29859113	22	2.0	22	95	0	79	36	15	0	47	1.46
29865003--29865045	19	2.3	19	84	11	61	62	0	9	27	1.25
29865004--29865051	22	2.4	19	82	10	51	60	0	8	31	1.26
29870769--29870843	27	2.7	27	83	4	87	24	25	13	37	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29870958--29871024	27	2.4	27	85	2	80	31	19	13	35	1.90
29871570--29871599	14	2.1	15	93	6	53	70	0	3	26	1.03
29871858--29871882	13	1.9	13	100	0	50	48	4	32	16	1.64
29872656--29872807	13	11.5	13	75	10	96	39	2	16	41	1.62
29872656--29872772	53	2.2	52	80	6	128	39	2	17	41	1.63
29872708--29872792	40	2.1	40	82	4	100	40	2	14	43	1.58
29879161--29879226	26	2.5	26	87	0	96	22	24	24	28	1.99
29882882--29882927	23	2.0	23	100	0	92	34	17	21	26	1.95
29887028--29887107	18	4.1	21	76	15	82	43	17	25	13	1.86
29887032--29887105	39	1.9	39	91	2	123	40	17	27	14	1.89
29898973--29899227	126	2.0	126	96	0	474	32	20	18	29	1.96
29934175--29934314	68	2.1	68	93	1	237	26	13	5	55	1.59
29937917--29937947	16	1.9	16	93	0	53	54	3	0	41	1.16
29939187--29939244	11	5.2	11	85	2	62	20	32	3	43	1.69
29939187--29939262	22	3.4	22	78	5	64	25	31	2	40	1.69
29939222--29939321	51	2.0	51	82	4	121	29	27	2	42	1.67
29942504--29942927	127	3.4	125	87	3	566	29	22	16	30	1.96
29943716--29943758	21	2.0	21	86	0	59	39	0	13	46	1.44
29947649--29947684	6	6.0	6	93	0	54	55	0	27	16	1.42
29947650--29947688	18	2.2	18	95	0	69	61	0	23	15	1.33
29947650--29947688	12	3.2	12	88	0	60	61	0	23	15	1.33
29948552--29948629	40	2.0	39	90	5	122	43	11	8	35	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29954300--29954476	82	2.2	83	81	9	220	24	27	19	27	1.99
29954302--29954451	41	3.7	41	88	3	221	23	28	20	27	1.99
29956507--29956531	13	1.9	13	100	0	50	68	24	0	8	1.16
29964065--29964103	19	2.0	20	85	14	55	5	12	17	64	1.46
29965349--29965380	15	2.1	15	94	0	55	40	0	0	59	0.97
29970908--29970979	36	2.0	36	97	0	135	31	16	16	34	1.92
29973691--29973747	25	2.3	25	100	0	114	19	31	21	28	1.97
29973735--29973779	16	2.8	16	93	0	72	15	28	26	28	1.96
29973751--29973849	41	2.4	41	96	0	180	19	29	23	28	1.98
29973751--29973877	41	3.1	41	87	2	121	22	29	22	25	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144