genome.fa.s11.2.7.7.80.10.50.1000.51.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr6
Parameters: 2 7 7 80 10 50 1000
Length:  44797108

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   

This is table  51  of  144  ( 17221 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15927199--15927254	16	3.4	16	80	5	58	23	3	3	69	1.20
15929049--15929088	13	3.2	13	85	3	55	70	2	2	25	1.13
15932535--15932573	18	2.2	18	86	13	55	23	2	2	71	1.10
15933680--15933707	7	4.0	7	100	0	56	28	0	0	71	0.86
15933728--15933799	16	4.6	16	76	10	60	62	2	2	31	1.24
15936839--15936873	13	2.5	14	86	13	54	54	0	0	45	0.99
15948884--15948950	34	2.0	34	100	0	134	0	46	8	44	1.35
15950063--15950103	14	2.9	14	81	0	55	46	12	4	36	1.63
15957420--15957471	23	2.3	23	87	6	72	9	13	11	65	1.47
15963849--15964051	46	4.3	48	88	7	265	35	14	21	28	1.92
15963783--15964051	98	2.7	98	93	0	457	34	14	22	28	1.93
15964015--15964160	37	4.0	37	93	1	242	36	16	21	24	1.94
15973420--15973451	6	5.3	6	100	0	64	15	34	0	50	1.45
15975985--15976017	14	2.4	14	94	0	57	33	42	15	9	1.78
15977060--15977113	27	2.0	27	96	0	99	5	11	38	44	1.63
15981138--15981169	14	2.3	14	100	0	64	31	46	15	6	1.71
15989541--15989575	18	1.9	18	94	0	61	62	5	0	31	1.18
16004542--16004570	6	4.8	6	100	0	58	34	51	13	0	1.42
16006910--16006975	14	4.8	14	76	7	55	56	9	4	30	1.51
16007111--16007141	6	5.2	6	100	0	62	32	0	16	51	1.44
16007320--16007365	24	1.9	24	82	8	58	58	0	8	32	1.28
16007327--16007396	27	2.6	28	84	8	83	57	0	10	32	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16007966--16007995	13	2.3	13	94	0	51	86	0	10	3	0.67
16008901--16009119	89	2.5	89	81	1	269	27	25	17	29	1.98
16008899--16009527	44	14.2	44	74	5	462	28	23	17	30	1.97
16008898--16009527	133	4.7	133	77	5	596	28	23	17	30	1.97
16009063--16009518	89	5.1	89	90	2	634	28	23	18	29	1.98
16008903--16009447	222	2.5	221	83	3	675	28	23	17	30	1.97
16014991--16015082	32	2.9	32	98	0	175	45	15	15	23	1.84
16019670--16019710	21	2.0	21	90	9	66	39	0	7	53	1.29
16023956--16024052	6	16.0	6	85	6	115	14	21	2	61	1.43
16023956--16024052	18	5.3	18	87	1	131	14	21	2	61	1.43
16030848--16030890	21	2.0	21	86	8	61	44	6	2	46	1.43
16038497--16038634	68	2.0	68	100	0	276	43	8	18	28	1.80
16042207--16042251	22	2.0	22	83	8	56	24	31	2	42	1.67
16044190--16044283	9	10.4	9	81	4	100	41	22	7	28	1.81
16044199--16044283	18	4.7	18	88	0	125	41	22	8	28	1.82
16044190--16044283	27	3.5	28	82	5	122	41	22	7	28	1.81
16044932--16045207	116	2.3	119	92	3	450	39	3	9	46	1.54
16045013--16045189	55	3.1	55	69	22	157	41	4	7	46	1.53
16048030--16048319	126	2.3	125	90	0	472	28	19	18	32	1.96
16048335--16048705	104	3.7	104	82	7	422	39	19	2	38	1.67
16052645--16052726	33	2.5	33	82	4	94	35	19	26	18	1.95
16052707--16052766	29	2.1	28	84	3	75	43	21	21	13	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16068060--16068104	14	3.4	14	70	17	51	60	0	4	35	1.17
16068059--16068107	25	2.0	25	100	0	98	57	0	4	38	1.18
16069800--16069841	14	3.0	14	85	0	57	33	30	9	26	1.88
16074157--16074243	30	2.9	31	81	6	99	34	14	17	33	1.91
16076830--16076888	30	2.0	30	93	0	100	32	20	10	37	1.86
16079545--16079747	27	7.5	27	80	4	178	54	3	3	38	1.34
16079541--16079747	54	3.8	53	82	5	227	54	3	3	38	1.34
16079550--16079723	68	2.6	68	94	0	305	55	3	2	37	1.32
16079550--16079744	68	2.9	67	90	3	302	53	3	3	39	1.34
16079729--16079807	20	3.8	20	72	11	70	48	3	6	41	1.47
16082823--16082864	22	1.9	22	90	0	66	26	21	16	35	1.94
16082847--16082976	68	1.9	68	82	3	163	26	20	16	36	1.94
16085443--16085523	19	4.4	19	78	9	96	40	7	16	35	1.76
16086133--16086205	23	3.3	22	75	14	62	28	1	5	64	1.24
16086150--16086211	22	2.9	22	73	20	58	32	1	4	61	1.27
16095598--16095643	23	2.1	22	84	8	58	36	0	10	52	1.37
16096922--16096956	18	1.9	18	88	11	54	82	8	5	2	0.91
16097871--16097908	11	3.5	11	85	0	58	52	0	0	47	1.00
16101083--16101117	14	2.6	14	95	4	63	40	17	17	25	1.90
16101597--16101636	13	3.1	13	85	0	62	35	27	7	30	1.84
16106619--16106718	28	3.6	28	98	0	191	31	12	26	31	1.92
16107442--16107958	141	3.7	142	93	1	851	26	13	18	41	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16107442--16107958	23	22.0	23	74	10	330	26	13	18	41	1.87
16107442--16107958	71	7.3	71	87	1	743	26	13	18	41	1.87
16108454--16108548	40	2.4	40	87	0	127	24	36	20	18	1.95
16110618--16110709	30	3.1	30	87	6	125	29	17	20	32	1.96
16119293--16119332	16	2.5	15	84	11	53	40	5	0	55	1.22
16121681--16122084	44	9.2	44	74	7	327	28	26	17	26	1.97
16121681--16122086	132	3.1	132	91	0	668	28	26	16	27	1.97
16138980--16139061	36	2.3	36	97	0	155	31	0	17	51	1.46
16143726--16143797	28	2.6	28	90	0	108	31	12	26	29	1.93
16143726--16143806	28	3.0	24	76	16	63	33	12	23	30	1.92
16144519--16144879	70	5.1	69	86	4	463	26	12	17	43	1.85
16144519--16144879	140	2.6	142	87	4	523	26	12	17	43	1.85
16144521--16144859	23	14.5	23	73	4	223	26	13	16	43	1.85
16147502--16147544	16	2.7	16	82	10	52	55	2	0	41	1.12
16152378--16152404	10	2.7	10	100	0	54	37	0	0	62	0.95
16161489--16161549	31	2.0	31	86	0	86	34	11	6	47	1.66
16165033--16165177	69	2.2	67	80	12	162	18	10	17	53	1.72
16169254--16169527	151	1.8	151	91	0	451	33	21	16	28	1.95
16171228--16171288	18	3.4	17	77	8	68	26	36	8	29	1.85
16176369--16176417	19	2.5	19	81	12	64	14	8	0	77	0.98
16186029--16186219	41	4.6	41	98	0	355	23	28	20	27	1.99
16196394--16196434	15	2.7	15	80	0	55	56	9	2	31	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16199292--16199325	16	2.1	16	88	0	50	41	0	2	55	1.15
16201811--16201843	15	2.3	15	94	5	59	36	0	0	63	0.95
16201940--16202027	38	2.4	37	83	14	103	29	5	4	60	1.40
16201942--16202022	18	4.4	18	71	17	60	29	4	3	61	1.34
16205507--16205556	24	2.1	24	88	0	73	34	20	16	30	1.94
16205592--16205794	53	3.8	53	92	0	316	36	14	10	37	1.82
16207070--16207120	23	2.2	23	92	0	84	41	21	9	27	1.84
16208080--16208153	33	2.2	35	82	4	89	29	18	17	33	1.94
16210263--16210303	19	2.2	19	95	0	73	39	7	9	43	1.65
16217117--16217196	41	2.0	41	87	0	115	17	23	38	20	1.93
16221258--16221290	14	2.5	13	86	13	50	21	0	0	78	0.75
16221915--16221949	3	11.7	3	100	0	70	34	0	0	65	0.93
16221951--16221989	19	2.2	18	86	9	53	30	5	2	61	1.31
16224878--16225344	87	5.5	84	75	10	360	25	21	20	32	1.98
16224889--16225294	44	9.5	43	72	11	198	26	21	20	31	1.98
16224877--16225293	169	2.4	163	76	12	358	26	21	20	31	1.98
16247293--16247321	2	14.5	2	100	0	58	48	0	0	51	1.00
16248304--16248337	16	2.1	16	89	10	52	58	0	5	35	1.22
16248373--16248453	31	2.7	30	82	7	92	32	6	13	48	1.67
16259832--16259856	2	12.5	2	100	0	50	0	0	48	52	1.00
16263779--16263803	13	1.9	13	100	0	50	36	8	0	56	1.29
16263890--16263930	21	2.0	20	86	9	57	26	14	12	46	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16264217--16264734	151	3.5	148	83	7	616	27	9	25	38	1.86
16264484--16264734	138	1.8	138	89	1	396	26	8	27	37	1.85
16268264--16268340	33	2.3	33	86	0	109	22	16	20	40	1.91
16269516--16269618	30	3.4	30	72	5	89	20	19	29	31	1.97
16269661--16269757	23	4.2	23	73	5	88	36	14	23	25	1.93
16272650--16272711	30	2.1	30	84	6	81	37	14	9	38	1.79
16276658--16276699	3	14.0	3	89	0	66	61	0	4	33	1.17
16276763--16276817	11	5.0	11	76	10	51	69	0	9	21	1.16
16276935--16277033	4	24.8	4	70	11	60	67	1	7	24	1.21
16276909--16276967	23	2.5	24	83	2	75	67	0	6	25	1.15

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144