genome.fa.s11.2.7.7.80.10.50.1000.126.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr6
Parameters: 2 7 7 80 10 50 1000
Length:  44797108

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   

This is table  126  of  144  ( 17221 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39079029--39079160	68	1.9	70	82	4	169	46	14	0	38	1.50
39081753--39081778	13	2.0	13	100	0	52	30	0	0	69	0.89
39083025--39083092	33	2.1	33	100	0	136	27	23	11	36	1.90
39083836--39083873	17	2.3	17	86	4	51	23	21	23	31	1.98
39095186--39095217	16	2.0	16	93	0	55	25	15	0	59	1.36
39095425--39095623	51	3.9	52	79	4	208	29	27	18	25	1.98
39106365--39106831	163	2.9	161	84	3	625	25	9	23	40	1.85
39109493--39109541	25	2.0	25	84	8	64	32	0	0	67	0.91
39126089--39126135	6	7.8	6	92	0	76	17	27	0	55	1.42
39127852--39127915	33	1.9	33	83	0	83	31	21	21	25	1.98
39135218--39135293	26	2.9	26	76	5	73	31	21	22	25	1.98
39137447--39137502	24	2.3	24	84	0	67	30	5	10	53	1.58
39145869--39145931	28	2.3	27	84	13	76	34	28	14	22	1.93
39146060--39146119	27	2.2	26	83	16	70	15	23	23	38	1.92
39156874--39156904	16	1.9	16	93	0	53	16	9	3	70	1.26
39163400--39163439	20	2.0	21	95	5	73	20	25	20	35	1.96
39169327--39169353	13	2.1	13	100	0	54	55	14	7	22	1.64
39173180--39173213	6	5.7	6	100	0	68	70	0	0	29	0.87
39174185--39174229	20	2.2	20	88	0	63	53	11	15	20	1.72
39180791--39180826	17	2.1	18	89	5	56	63	5	0	30	1.17
39189129--39189264	50	2.7	50	75	2	130	19	24	24	31	1.98
39189457--39190157	88	8.0	88	92	0	1078	25	26	20	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39191397--39191437	20	2.0	21	90	4	66	17	14	0	68	1.22
39191933--39192001	11	6.3	10	75	20	50	2	5	8	82	0.92
39191932--39192009	27	3.0	26	80	14	81	2	7	8	80	0.98
39191933--39192001	32	2.2	32	82	10	79	2	5	8	82	0.92
39195785--39195837	28	1.9	28	84	3	72	45	13	13	28	1.80
39200084--39200160	38	2.0	38	97	0	145	33	22	18	25	1.96
39205759--39205865	50	2.1	50	84	3	144	21	32	19	26	1.97
39210467--39210496	15	1.9	16	93	6	53	56	0	0	43	0.99
39217104--39217155	2	26.0	2	88	0	68	46	0	50	3	1.20
39219266--39219303	19	2.0	19	100	0	76	31	36	0	31	1.58
39219804--39219859	22	2.6	22	83	8	62	19	32	16	32	1.94
39223753--39223810	24	2.4	24	80	5	64	24	17	17	41	1.90
39223788--39223854	25	2.7	25	79	9	73	29	17	22	29	1.97
39224977--39225056	12	6.7	12	85	0	106	25	38	26	10	1.87
39227786--39227955	82	2.1	82	96	0	313	28	17	28	25	1.97
39227786--39227955	41	4.1	41	89	0	268	28	17	28	25	1.97
39228171--39228254	37	2.3	37	79	8	98	30	5	26	36	1.80
39245141--39245180	20	2.0	20	100	0	80	25	40	10	25	1.86
39249593--39249654	25	2.5	26	87	10	87	67	20	6	4	1.32
39249592--39249646	23	2.2	27	84	15	82	74	16	5	3	1.15
39249593--39249665	25	3.0	25	80	11	80	68	21	5	4	1.27
39264224--39264312	40	2.2	39	79	13	92	34	23	19	22	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39266475--39266616	50	2.8	50	84	3	196	30	28	18	22	1.97
39275562--39275672	19	5.8	19	91	0	186	39	9	14	36	1.78
39275562--39275698	19	6.9	21	87	4	114	38	8	15	37	1.77
39280945--39281472	132	4.0	132	94	1	925	28	18	23	28	1.98
39280945--39281472	263	2.0	264	94	1	934	28	18	23	28	1.98
39281815--39281962	19	7.8	19	89	0	233	39	8	12	38	1.75
39281821--39281962	38	3.7	38	99	0	275	40	8	12	38	1.74
39281815--39281988	19	8.9	21	86	3	142	39	8	13	39	1.75
39286405--39286538	69	2.0	67	88	5	198	40	3	5	50	1.42
39286438--39286541	32	3.1	32	68	13	75	40	3	7	48	1.50
39288993--39289114	49	2.5	49	82	2	138	32	34	12	20	1.90
39294670--39294777	29	3.7	30	69	13	89	44	4	0	50	1.29
39298531--39298580	25	2.0	26	84	4	66	58	6	0	36	1.23
39300496--39300525	13	2.3	13	100	0	60	40	0	36	23	1.55
39300929--39300984	9	6.3	9	73	19	55	80	0	1	17	0.80
39300932--39300981	19	2.8	18	78	18	52	82	0	2	16	0.77
39300929--39300982	16	3.1	17	72	15	56	81	0	1	16	0.78
39301891--39301931	18	2.2	20	86	8	59	46	19	14	19	1.84
39304745--39304833	19	4.7	19	91	0	142	35	8	14	40	1.78
39304745--39304858	38	2.9	38	88	5	165	35	7	16	40	1.78
39305011--39305055	23	2.0	23	86	0	63	24	0	13	62	1.31
39305281--39305310	13	2.4	13	94	5	53	30	0	0	70	0.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39305689--39305795	40	2.7	39	69	20	112	22	14	9	54	1.68
39306970--39307003	17	1.9	18	88	5	52	29	0	5	64	1.17
39310956--39310999	23	1.9	23	86	9	63	25	9	18	47	1.77
39320364--39320451	40	2.2	40	91	0	149	32	18	27	21	1.96
39324573--39324628	25	2.3	24	81	9	60	16	28	23	32	1.96
39324624--39324688	25	2.6	26	75	18	66	20	27	21	30	1.98
39331462--39331517	17	3.3	17	92	0	94	12	28	44	14	1.81
39341781--39341934	24	6.3	24	72	9	96	19	27	19	33	1.96
39341793--39341929	24	5.6	24	73	10	98	18	27	19	34	1.95
39345074--39345116	22	1.9	23	85	4	61	60	4	2	32	1.30
39357548--39357707	42	3.8	42	86	2	212	29	22	24	23	1.99
39357721--39357838	43	2.8	43	86	1	157	26	23	22	27	1.99
39357721--39357840	42	2.8	42	86	2	152	26	23	21	28	1.99
39358275--39358302	12	2.3	12	100	0	56	0	42	17	39	1.50
39358287--39358344	21	2.8	21	89	0	80	3	41	20	34	1.69
39358287--39358351	21	3.1	21	88	0	76	3	43	20	33	1.67
39360704--39360733	13	2.3	13	94	0	51	50	10	0	40	1.36
39361490--39361517	11	2.5	11	100	0	56	67	14	0	17	1.22
39363568--39363706	7	19.0	7	70	14	75	33	43	0	22	1.58
39363568--39363706	15	9.5	15	74	10	83	33	43	0	22	1.58
39363569--39363703	22	6.1	22	81	8	132	31	45	0	22	1.58
39363592--39363630	16	2.5	15	87	4	60	28	46	2	23	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39364663--39364845	41	4.4	42	75	10	153	35	27	15	20	1.94
39364650--39364842	82	2.3	82	77	11	205	35	26	16	20	1.94
39367362--39367393	16	2.1	16	94	5	57	37	3	12	46	1.57
39367474--39367503	12	2.5	12	94	0	51	56	0	0	43	0.99
39369189--39369233	23	2.0	22	83	12	56	60	15	11	13	1.60
39370960--39371038	35	2.3	35	88	4	115	24	21	30	24	1.99
39376008--39376196	51	3.8	49	77	6	200	24	17	26	30	1.97
39376014--39376198	101	1.8	102	89	5	295	24	18	25	30	1.98
39376021--39376206	102	1.8	100	88	5	259	25	18	26	30	1.98
39376424--39376455	16	2.0	16	100	0	64	62	0	12	25	1.30
39381769--39381946	51	3.5	49	76	16	150	23	17	28	30	1.97
39382003--39382033	14	2.2	14	94	0	53	77	9	0	12	0.99
39382135--39382188	19	2.8	19	94	0	99	37	9	16	37	1.81
39382124--39382195	38	2.0	36	84	10	94	37	9	16	36	1.82
39382135--39382211	38	1.9	40	87	10	113	36	7	16	38	1.78
39390175--39390199	11	2.3	11	100	0	50	36	36	0	28	1.58
39399225--39399262	19	2.0	19	89	0	58	28	28	5	36	1.79
39399396--39399429	13	2.6	13	90	0	50	44	5	0	50	1.26
39412837--39412870	17	1.9	18	88	5	52	35	14	8	41	1.77
39418648--39418735	44	2.0	44	90	0	140	42	11	25	21	1.86
39427446--39427987	271	2.0	271	98	0	1039	35	19	23	22	1.96
39429150--39429304	44	3.5	44	73	5	159	30	17	23	28	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39431048--39431081	17	1.9	18	88	5	52	35	14	8	41	1.77
39437703--39437772	29	2.4	29	88	9	99	32	7	14	45	1.72
39449141--39449194	25	2.2	24	86	3	72	24	27	16	31	1.96
39449447--39449489	20	2.2	19	84	16	52	65	18	2	13	1.38
39459550--39459619	28	2.5	28	86	6	97	47	0	1	51	1.09
39459550--39459619	29	2.5	27	88	6	104	47	0	1	51	1.09
39460338--39460413	36	2.1	37	90	2	118	48	1	1	48	1.18
39460723--39460752	13	2.4	13	94	5	53	30	0	0	70	0.88
39460815--39460848	17	2.0	16	88	11	50	55	0	2	41	1.15
39466419--39466495	34	2.3	34	93	0	127	35	31	14	19	1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144