genome.fa.s11.2.7.7.80.10.50.1000.44.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr6
Parameters: 2 7 7 80 10 50 1000
Length:  44797108

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   

This is table  44  of  144  ( 17221 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13567033--13567068	18	1.9	19	88	5	56	63	0	2	33	1.08
13570352--13570403	25	2.1	25	85	3	70	28	1	1	67	1.12
13574929--13574978	9	5.6	9	79	15	59	54	2	0	44	1.11
13576498--13576536	18	2.2	18	95	0	69	23	25	10	41	1.86
13576961--13577008	24	2.0	24	84	8	62	37	0	8	54	1.31
13578361--13578455	49	1.9	50	93	2	165	37	20	12	29	1.89
13580120--13580367	125	2.0	126	82	4	304	29	16	16	37	1.91
13580490--13580606	34	3.4	34	89	2	164	46	16	0	37	1.47
13587879--13588270	196	2.0	196	100	0	784	35	17	4	42	1.70
13588979--13589453	234	2.0	234	99	0	941	37	8	4	50	1.51
13589422--13589453	16	2.1	16	94	5	57	40	0	0	59	0.97
13589409--13589461	27	2.1	26	86	10	74	43	0	0	56	0.99
13596072--13596107	18	2.0	18	88	0	54	63	2	2	30	1.22
13597180--13597235	29	1.9	29	88	0	85	73	0	1	25	0.93
13599123--13599170	25	1.9	25	82	0	60	27	16	29	27	1.97
13599161--13599216	25	2.2	25	87	6	78	35	10	30	23	1.89
13612962--13613000	18	2.2	17	86	4	51	51	2	0	46	1.14
13613748--13613804	20	2.8	20	76	15	64	54	5	0	40	1.23
13615194--13615233	20	2.0	20	85	5	53	10	22	5	62	1.46
13622903--13622994	45	2.0	46	91	2	150	36	18	6	38	1.77
13630485--13630611	62	2.0	63	87	4	186	31	15	4	48	1.66
13630689--13630723	12	2.9	12	91	0	52	22	11	25	40	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13640372--13640428	29	2.0	29	82	6	71	33	26	15	24	1.95
13641969--13642028	30	2.0	30	100	0	120	23	36	3	36	1.71
13659104--13659145	21	2.0	21	85	0	57	33	2	28	35	1.70
13663576--13663627	19	2.7	18	80	16	52	51	3	1	42	1.31
13666786--13667273	121	4.0	121	99	0	967	43	19	9	28	1.81
13676236--13676296	26	2.4	26	91	5	99	26	13	40	19	1.88
13684915--13685891	46	22.7	42	71	12	573	31	20	21	26	1.98
13684959--13685980	215	4.7	215	97	0	1832	31	19	21	26	1.98
13685129--13685891	45	17.7	44	68	16	162	31	20	22	26	1.98
13685779--13685941	87	1.9	88	85	1	229	30	21	23	24	1.99
13691235--13691280	21	2.1	21	84	8	56	39	0	4	56	1.19
13692997--13693245	50	4.8	50	87	3	318	21	29	23	25	1.99
13692996--13693245	100	2.4	103	88	5	353	21	29	23	25	1.99
13696142--13696241	25	4.0	25	84	8	141	8	29	5	58	1.48
13696142--13696243	51	2.0	51	98	0	195	7	28	5	57	1.50
13700918--13700991	38	1.9	38	97	0	139	37	16	17	28	1.91
13701882--13701964	26	3.2	26	94	0	139	34	18	7	39	1.78
13701853--13701964	52	2.2	52	83	0	134	34	16	8	40	1.78
13719734--13719767	5	6.8	5	89	0	50	61	0	2	35	1.11
13720143--13720201	15	3.8	15	71	20	50	44	0	3	52	1.17
13720315--13720349	12	2.9	12	86	0	52	77	0	22	0	0.78
13741862--13741888	12	2.2	12	100	0	54	22	7	0	70	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13742161--13742270	56	2.0	56	94	0	193	34	19	18	28	1.95
13751401--13751469	31	2.2	31	82	10	79	53	5	10	30	1.58
13752512--13752551	19	2.0	20	86	13	57	47	2	2	47	1.29
13753877--13754489	167	3.7	167	97	0	1140	22	20	26	30	1.98
13758373--13758407	14	2.5	14	85	0	52	22	22	14	40	1.90
13772447--13772538	43	2.1	43	95	0	166	25	16	14	44	1.85
13773659--13773683	7	3.6	7	100	0	50	28	0	16	56	1.41
13776477--13776513	13	2.9	13	92	4	58	64	0	0	35	0.94
13776616--13776647	16	2.0	16	93	0	55	21	6	28	43	1.77
13777920--13777987	25	2.9	25	87	8	90	19	20	22	38	1.94
13777939--13778027	25	3.6	25	82	0	106	23	20	22	33	1.97
13782736--13782761	5	5.2	5	100	0	52	38	0	0	61	0.96
13785458--13785493	16	2.2	16	95	0	63	38	2	33	25	1.70
13785475--13785567	44	2.1	44	84	6	116	33	3	26	36	1.73
13785706--13786076	120	3.1	120	97	0	697	51	4	1	42	1.31
13785741--13786061	61	5.3	60	71	12	280	50	4	1	42	1.33
13788374--13788401	14	2.0	14	100	0	56	64	0	28	7	1.20
13794159--13794285	29	4.6	27	87	2	164	38	29	7	24	1.83
13794160--13794285	9	13.6	9	80	6	144	38	29	7	24	1.84
13794311--13794411	20	5.3	20	68	13	79	47	14	2	34	1.60
13794283--13794433	37	4.0	37	91	1	221	48	14	3	33	1.60
13794331--13794391	17	3.4	17	72	12	50	52	11	1	34	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13798279--13798304	9	2.9	9	100	0	52	34	0	23	42	1.54
13802822--13802849	14	2.0	14	100	0	56	64	0	28	7	1.20
13810713--13810829	62	1.9	62	100	0	234	33	23	18	24	1.97
13816367--13817385	206	4.9	207	89	1	1461	37	15	15	31	1.89
13821525--13821585	20	3.1	19	81	9	68	57	0	1	40	1.08
13821542--13821577	10	3.6	10	88	0	54	58	0	0	41	0.98
13821528--13821586	9	6.0	10	79	15	61	59	0	1	38	1.08
13821496--13821585	10	9.4	10	69	19	50	55	0	1	43	1.07
13821532--13821604	29	2.6	29	80	4	69	57	0	4	38	1.18
13822897--13822954	18	3.1	19	80	14	66	31	1	3	63	1.21
13824559--13824588	7	4.3	7	91	0	51	23	13	33	30	1.93
13824614--13824682	32	2.2	32	94	0	120	47	11	14	26	1.78
13826733--13827239	267	1.9	266	86	4	720	27	21	9	41	1.84
13827360--13827458	27	3.2	32	77	18	118	33	25	27	14	1.94
13827491--13827548	30	1.9	30	82	0	71	31	22	6	39	1.80
13830135--13830255	58	2.1	58	84	1	152	47	5	18	28	1.71
13831674--13831723	21	2.4	21	93	0	82	34	18	46	2	1.60
13831868--13831937	32	2.2	32	80	12	81	35	4	0	60	1.17
13835275--13835331	15	3.5	15	73	17	60	50	1	0	47	1.11
13835270--13835344	34	2.3	32	80	11	82	48	1	4	46	1.29
13835694--13835765	33	2.2	33	83	11	87	50	16	5	27	1.68
13837363--13837445	36	2.2	37	91	4	132	25	38	2	33	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13837365--13837458	36	2.9	31	81	9	82	23	40	3	32	1.70
13839532--13839561	8	3.8	8	95	0	51	66	3	0	30	1.07
13839570--13839615	21	2.1	22	84	4	58	43	4	0	52	1.21
13845142--13845224	41	2.1	39	84	4	103	14	4	38	42	1.67
13845538--13845568	6	5.2	6	100	0	62	35	32	0	32	1.58
13846474--13846503	13	2.4	13	94	5	53	83	0	0	16	0.65
13854401--13854448	23	2.1	23	100	0	96	18	16	25	39	1.91
13857417--13857572	82	1.9	81	82	3	197	41	9	16	32	1.81
13864786--13865203	209	2.0	209	100	0	836	31	19	19	29	1.96
13866565--13866608	20	2.2	19	84	8	52	59	2	0	38	1.10
13867076--13867100	6	4.2	6	100	0	50	48	0	0	52	1.00
13867043--13867088	24	1.9	24	91	8	76	41	0	0	58	0.98
13885886--13885929	19	2.3	20	84	7	56	36	0	2	61	1.09
13889297--13889331	15	2.2	16	90	5	54	45	2	11	40	1.55
13892277--13892369	44	2.1	45	82	6	109	47	8	15	29	1.74
13899726--13899766	19	2.1	20	82	13	50	34	4	17	43	1.70
13900436--13900504	19	3.5	20	73	11	61	63	4	5	26	1.35
13902997--13903022	11	2.4	11	100	0	52	38	7	0	53	1.30
13902981--13903083	50	2.1	49	96	1	188	32	2	0	65	1.08
13903077--13903123	25	1.9	24	83	12	60	38	0	6	55	1.26
13907390--13907477	31	2.9	31	86	5	117	55	12	1	30	1.44
13908737--13908780	22	2.0	21	82	4	52	25	4	4	65	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13908940--13909019	31	2.7	30	86	7	101	66	5	0	28	1.13
13912025--13912089	30	2.1	32	85	5	89	52	7	1	38	1.40
13912778--13912830	24	2.2	24	93	0	88	39	18	33	7	1.79
13912755--13912818	30	2.1	30	85	5	85	42	18	28	10	1.84
13912785--13912840	24	2.3	24	96	0	103	35	19	37	7	1.79
13914956--13915005	27	2.0	25	84	11	66	38	4	0	58	1.17
13914885--13915186	151	2.0	149	87	3	426	40	8	6	44	1.61
13915145--13915217	31	2.4	30	78	13	76	38	9	1	50	1.44
13918855--13918879	12	2.1	12	100	0	50	32	8	16	44	1.76
13919111--13919152	17	2.5	17	80	7	50	47	11	4	35	1.61

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144