genome.fa.s11.2.7.7.80.10.50.1000.38.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr6
Parameters: 2 7 7 80 10 50 1000
Length:  44797108

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   

This is table  38  of  144  ( 17221 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11482333--11482479	66	2.2	66	86	7	201	40	17	29	12	1.86
11482450--11482522	21	3.5	21	82	0	74	35	17	41	5	1.73
11482470--11482557	21	4.2	21	83	0	104	35	15	43	5	1.71
11482919--11483303	43	9.0	43	73	6	244	24	20	28	26	1.99
11482932--11483221	86	3.4	86	80	2	305	26	18	29	25	1.98
11482919--11483221	130	2.3	129	76	6	290	25	18	29	26	1.98
11483372--11483414	22	2.0	22	85	0	59	44	25	18	11	1.84
11493879--11493909	14	2.3	13	94	5	53	35	6	6	51	1.53
11494246--11494339	46	2.0	46	100	0	188	54	14	10	20	1.70
11497764--11497805	22	1.9	22	95	0	75	47	0	0	52	1.00
11497795--11497827	16	2.1	16	94	0	57	39	15	0	45	1.46
11499430--11499474	17	2.6	18	96	3	83	46	0	17	35	1.49
11500591--11500745	46	3.6	46	74	21	174	36	13	21	29	1.91
11500627--11500699	36	2.0	36	92	5	121	39	15	19	26	1.90
11500684--11500871	62	3.0	62	93	3	315	34	12	24	29	1.92
11500806--11500912	46	2.4	46	90	4	166	33	13	24	28	1.93
11507269--11507331	31	2.0	31	81	0	72	39	9	14	36	1.78
11509634--11509907	91	3.0	91	95	1	487	33	15	11	39	1.83
11517832--11517859	7	4.0	7	100	0	56	42	28	14	14	1.84
11523217--11523256	19	2.1	19	85	0	53	42	7	10	40	1.67
11523227--11523269	20	2.2	19	83	4	50	37	9	9	44	1.69
11524800--11524841	21	2.0	21	85	0	57	38	0	11	50	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11526735--11526774	20	2.0	20	85	0	53	27	12	12	47	1.77
11528131--11528200	27	2.6	27	80	8	79	50	21	2	25	1.63
11530676--11531107	240	1.8	239	92	2	733	45	27	6	21	1.76
11543222--11543501	46	6.6	44	87	10	326	28	21	14	35	1.93
11543357--11543465	36	3.0	36	97	0	200	29	20	12	37	1.90
11548505--11548557	20	2.7	20	77	8	56	54	13	9	22	1.67
11548989--11549016	13	2.2	13	100	0	56	14	7	7	71	1.29
11551990--11552022	17	1.9	17	93	0	57	36	12	6	45	1.66
11558692--11558868	58	3.1	58	100	0	354	33	6	32	27	1.83
11567213--11567260	24	2.0	24	91	0	78	43	10	27	18	1.82
11572497--11572531	17	2.1	17	89	10	54	31	0	2	65	1.07
11582283--11582321	17	2.2	17	86	4	51	43	0	20	35	1.52
11582287--11582327	17	2.6	15	82	14	55	36	0	21	41	1.54
11582293--11582326	17	2.0	17	100	0	68	35	0	23	41	1.55
11583146--11583179	14	2.4	14	90	0	50	32	14	2	50	1.58
11583485--11583524	14	3.0	14	79	20	50	77	5	12	5	1.09
11585394--11585428	17	1.9	19	88	11	56	65	11	2	20	1.37
11587338--11587389	24	2.2	24	89	0	77	30	3	9	55	1.50
11590309--11590382	31	2.5	30	84	4	87	41	2	14	40	1.60
11593796--11593868	26	2.8	26	95	0	128	32	26	17	23	1.97
11603211--11603528	41	7.8	41	75	8	258	16	23	22	37	1.94
11603210--11603493	82	3.5	80	83	6	345	15	23	22	37	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11603209--11603527	123	2.6	119	78	8	295	16	24	22	36	1.94
11605260--11605296	10	3.7	10	88	0	56	43	0	16	40	1.48
11613046--11613216	66	2.6	65	84	6	211	40	18	28	12	1.87
11613198--11613299	21	4.9	21	81	0	114	36	16	42	4	1.70
11613644--11613857	43	5.0	42	82	2	230	23	16	28	30	1.96
11613644--11613873	87	2.7	87	80	4	261	22	16	28	31	1.96
11613644--11613895	130	1.9	129	80	4	283	25	17	28	29	1.97
11614136--11614179	22	2.0	22	95	0	79	38	27	20	13	1.90
11624144--11624196	24	2.2	24	89	0	79	37	3	9	49	1.53
11628325--11628440	43	2.7	43	89	2	162	22	27	31	18	1.97
11650211--11650463	87	2.9	86	84	5	332	37	19	9	33	1.83
11650516--11650571	28	2.0	28	83	13	71	58	1	3	35	1.26
11650832--11650911	28	2.9	27	78	14	101	31	2	1	65	1.14
11650832--11650928	19	5.2	19	72	15	69	28	4	1	65	1.17
11650832--11650937	56	1.9	56	86	3	151	28	5	0	65	1.22
11651022--11651326	88	3.4	89	87	2	380	32	7	19	40	1.80
11651022--11651261	88	2.7	89	92	0	383	30	8	21	40	1.83
11652942--11653014	23	3.2	23	62	14	60	46	6	12	34	1.68
11652925--11653020	46	2.1	46	98	0	183	46	7	10	35	1.66
11652925--11653047	46	2.7	47	87	7	164	47	6	9	36	1.63
11654041--11654066	12	2.2	12	100	0	52	46	15	0	38	1.46
11654247--11654286	20	2.0	21	90	5	64	45	0	0	55	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11654275--11654340	32	2.0	34	82	11	84	39	4	1	54	1.30
11660102--11660156	28	1.9	29	85	3	76	63	3	25	7	1.37
11660391--11660451	32	1.9	32	93	0	104	47	6	14	31	1.70
11660622--11660715	44	2.1	44	90	3	145	39	2	24	34	1.67
11660922--11660995	24	3.1	23	70	16	62	20	20	18	40	1.92
11663946--11663971	6	4.3	6	100	0	52	84	0	0	15	0.62
11666021--11666046	6	4.3	6	100	0	52	84	0	0	15	0.62
11681371--11681475	51	2.0	51	81	5	122	55	6	6	31	1.52
11681764--11681830	21	3.2	21	91	2	100	43	14	4	37	1.66
11681876--11681957	21	4.0	21	88	6	132	39	14	7	39	1.74
11681876--11681957	40	2.0	41	90	4	130	39	14	7	39	1.74
11682306--11682499	44	4.5	43	72	10	146	30	18	19	31	1.96
11682242--11682493	128	2.0	129	80	3	294	29	20	19	31	1.97
11682800--11683175	44	8.7	44	80	6	374	28	24	17	29	1.97
11682882--11683135	126	2.0	126	88	3	377	29	23	15	31	1.95
11683264--11683399	44	3.1	45	67	4	141	19	23	27	29	1.98
11683298--11683438	44	3.2	43	67	7	122	21	25	27	25	1.99
11683175--11683670	88	5.6	88	86	1	573	20	23	27	28	1.99
11683794--11683842	7	7.0	7	93	6	82	16	0	0	83	0.64
11690158--11690210	19	2.8	19	94	0	79	37	13	9	39	1.77
11690169--11690223	19	2.9	19	89	5	67	36	16	10	36	1.84
11692674--11692709	18	2.1	18	94	5	65	63	0	5	30	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11702654--11702716	20	3.0	20	72	9	54	60	0	1	38	1.07
11703149--11703203	13	4.4	13	79	6	51	36	5	0	58	1.21
11704201--11704308	15	7.2	15	69	12	87	25	23	7	43	1.79
11704191--11704314	30	4.1	30	95	1	212	25	25	6	42	1.78
11708895--11709002	15	7.2	15	69	12	87	25	23	7	43	1.79
11708885--11709008	30	4.1	30	95	1	212	25	25	6	42	1.78
11714160--11714222	30	2.1	30	93	0	108	25	3	14	57	1.52
11714346--11714378	11	2.9	12	86	13	52	66	0	0	33	0.92
11725843--11725892	17	2.7	20	78	18	70	10	0	44	46	1.37
11730889--11730936	17	2.8	17	72	12	53	33	8	2	56	1.41
11734667--11734703	11	3.5	11	82	14	51	48	0	0	51	1.00
11734903--11734983	21	3.9	21	70	6	65	40	17	27	14	1.88
11734893--11734986	42	2.2	42	90	3	145	42	20	24	12	1.87
11734893--11734998	42	2.5	42	87	6	135	42	17	24	15	1.88
11736436--11736461	2	13.0	2	100	0	52	50	0	0	50	1.00
11743980--11744064	21	4.0	21	73	0	80	42	18	23	15	1.88
11743999--11744092	42	2.2	42	84	3	127	43	19	20	17	1.88
11752934--11752967	16	2.1	16	100	0	68	38	11	20	29	1.88
11753789--11753820	16	2.0	16	93	0	55	34	0	15	50	1.45
11756951--11757021	35	2.0	35	97	0	133	47	5	12	33	1.65
11767196--11767252	29	2.0	29	89	6	89	22	1	3	71	1.10
11767228--11767314	19	4.8	18	63	9	52	36	1	3	58	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11767247--11767325	20	3.8	20	77	13	72	40	2	2	54	1.27
11772552--11772589	20	1.9	20	88	0	58	65	0	2	31	1.06
11773028--11773073	20	2.1	23	84	11	62	41	2	2	54	1.25
11775164--11775191	14	2.0	14	100	0	56	35	21	14	28	1.92
11779877--11779923	2	23.5	2	95	0	85	48	0	48	2	1.13
11787250--11787312	22	2.9	22	87	0	99	12	11	50	25	1.73
11788359--11788524	86	1.9	87	81	6	201	34	19	18	27	1.95
11788435--11790007	76	21.2	72	75	11	671	32	20	16	29	1.95
11788356--11789038	159	4.4	153	81	10	600	33	20	18	27	1.96
11789277--11789989	76	9.4	76	93	2	1059	30	20	15	33	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144