genome.fa.s11.2.7.7.80.10.50.1000.118.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr6
Parameters: 2 7 7 80 10 50 1000
Length:  44797108

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   

This is table  118  of  144  ( 17221 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36742649--36742708	30	2.1	29	87	6	86	63	1	3	31	1.20
36742649--36742696	19	2.4	20	75	6	53	60	2	2	35	1.20
36742649--36742698	20	2.5	21	77	9	59	60	2	2	36	1.20
36742758--36742807	20	2.7	17	82	14	55	60	2	2	36	1.20
36743293--36743327	16	2.1	17	89	5	54	25	8	2	62	1.38
36743383--36743452	26	2.7	27	82	10	76	31	5	0	62	1.18
36747355--36747446	44	2.1	43	82	11	107	55	3	3	38	1.32
36754637--36754675	19	2.1	19	100	0	78	66	23	10	0	1.22
36758811--36759084	31	8.4	32	71	22	180	43	18	7	31	1.78
36758829--36759121	66	4.5	66	91	0	423	43	17	8	31	1.79
36759261--36759358	40	2.4	40	84	5	126	30	18	19	31	1.96
36759507--36759761	79	3.3	78	86	5	338	40	16	3	38	1.67
36761166--36761303	63	2.2	63	84	2	179	25	21	29	23	1.99
36767852--36767891	19	2.1	19	90	9	64	50	10	10	30	1.69
36769285--36769324	19	2.1	19	90	9	64	50	10	10	30	1.69
36769833--36769873	20	2.0	20	95	0	73	53	14	7	24	1.66
36770182--36770225	7	6.0	7	83	5	52	52	2	20	25	1.58
36770182--36770225	22	2.0	22	86	8	63	52	2	20	25	1.58
36770192--36770238	4	12.8	4	80	17	57	48	0	25	25	1.51
36770196--36770239	11	4.0	11	82	11	54	47	0	25	27	1.52
36770780--36770812	17	2.0	17	88	5	50	57	12	0	30	1.35
36794718--36794964	50	4.8	50	80	5	228	22	27	21	29	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36794767--36794953	100	1.8	103	83	6	254	22	28	20	28	1.99
36797102--36797145	22	2.0	22	90	0	70	27	15	15	40	1.88
36797419--36797460	5	8.4	5	100	0	84	19	0	21	59	1.38
36798703--36798951	126	2.0	127	86	4	351	32	20	21	25	1.97
36798702--36798951	41	6.0	41	82	6	279	32	20	22	25	1.98
36798690--36798951	84	3.1	82	80	6	301	31	20	22	25	1.98
36798916--36799008	43	2.2	43	84	7	118	29	22	20	27	1.98
36799428--36799475	21	2.3	21	92	0	78	2	47	18	31	1.60
36799363--36799522	87	1.8	87	83	0	203	13	28	16	41	1.86
36804145--36804349	9	23.2	9	68	15	97	32	2	17	46	1.63
36804211--36804301	36	2.6	34	81	6	119	31	0	17	50	1.46
36806268--36806325	26	2.2	26	93	0	98	39	3	17	39	1.66
36807407--36807456	25	2.0	24	88	11	75	28	0	40	32	1.57
36808913--36808994	7	10.9	7	72	14	65	31	50	0	18	1.47
36808913--36808987	15	4.9	15	72	15	64	32	49	0	18	1.48
36808913--36809013	47	2.2	45	85	5	132	31	49	0	18	1.48
36808913--36809017	22	4.6	22	81	9	122	33	47	0	19	1.49
36809635--36809793	41	3.9	41	73	14	148	40	25	16	17	1.90
36809616--36809787	82	2.1	82	85	8	226	39	26	16	16	1.90
36813292--36813345	16	3.8	16	70	27	57	48	3	9	38	1.53
36813461--36813527	7	9.0	7	76	12	62	43	37	0	19	1.51
36813461--36813527	15	4.5	15	81	5	64	43	37	0	19	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36813462--36813528	22	3.0	22	80	2	71	43	35	0	20	1.53
36813536--36813587	7	7.1	7	76	6	50	28	42	1	26	1.66
36813589--36813666	22	3.6	22	73	13	72	43	35	1	19	1.59
36813627--36813811	7	25.1	7	71	10	93	47	28	0	23	1.56
36813660--36813731	15	4.9	14	75	14	56	47	27	0	25	1.52
36813589--36813811	14	15.2	14	71	10	88	46	30	0	22	1.58
36814010--36814036	14	1.9	14	100	0	54	18	0	29	51	1.46
36814701--36814996	154	1.9	155	81	3	355	31	22	17	27	1.97
36815045--36815072	12	2.3	12	100	0	56	46	32	14	7	1.71
36817884--36817927	22	2.0	22	90	0	70	27	15	15	40	1.88
36818201--36818242	5	8.4	5	100	0	84	19	0	21	59	1.38
36819561--36819596	17	2.1	18	89	5	56	38	0	2	58	1.13
36826042--36826085	23	1.9	23	86	9	63	59	0	2	38	1.10
36826723--36826765	20	2.2	20	87	4	61	30	0	0	69	0.88
36841556--36841620	24	2.6	24	76	9	60	58	4	6	30	1.43
36841576--36841645	7	8.9	7	72	21	50	62	2	4	30	1.28
36841596--36841644	17	2.8	17	84	9	64	63	0	4	32	1.13
36841593--36841681	25	3.7	23	72	20	67	68	1	5	24	1.18
36841593--36841680	17	5.4	16	71	17	58	68	1	5	25	1.19
36841760--36841844	3	28.7	3	71	15	61	62	3	2	31	1.25
36843222--36843684	129	3.6	128	80	6	463	26	22	20	30	1.99
36843137--36843679	44	12.7	42	70	11	245	27	22	20	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36843274--36843684	128	3.2	128	81	7	462	26	21	21	30	1.98
36843131--36843599	173	2.7	170	73	8	444	26	23	20	28	1.99
36843691--36843998	100	3.1	100	83	3	379	26	23	19	30	1.98
36846291--36846324	16	2.1	16	94	0	59	47	20	11	20	1.81
36847760--36847829	7	8.9	7	72	21	50	62	2	4	30	1.28
36847780--36847828	17	2.8	17	84	9	64	63	0	4	32	1.13
36847777--36847839	25	2.5	23	75	25	65	65	1	4	28	1.22
36847777--36847830	8	6.5	8	77	8	54	66	0	3	29	1.09
36847777--36847839	17	3.8	16	74	14	56	65	1	4	28	1.22
36847835--36847864	5	6.0	5	100	0	60	80	0	20	0	0.72
36848627--36848669	21	2.0	22	82	13	54	79	6	6	6	1.07
36855591--36855623	14	2.4	14	89	0	57	48	6	15	30	1.69
36858988--36859035	24	2.0	24	91	0	78	33	4	10	52	1.55
36860427--36860534	25	4.3	25	86	0	126	33	19	25	21	1.97
36860427--36860534	50	2.2	50	86	0	144	33	19	25	21	1.97
36860447--36860535	25	3.6	25	90	0	142	32	21	23	22	1.98
36862552--36862594	19	2.3	19	88	8	61	58	4	0	37	1.19
36863066--36863185	5	21.3	6	66	24	57	48	2	1	47	1.25
36863066--36863181	60	1.9	62	89	3	182	48	2	1	47	1.26
36866399--36866586	27	7.0	27	92	3	290	17	24	38	19	1.92
36866469--36866568	12	7.6	12	68	18	56	15	26	41	18	1.89
36866648--36866694	18	2.5	20	79	10	62	63	2	34	0	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36866644--36866697	22	2.4	23	84	12	76	64	1	33	0	1.04
36868723--36868922	88	2.3	88	99	0	391	42	17	13	27	1.86
36869886--36869927	16	2.7	15	85	7	57	57	2	2	38	1.25
36869964--36870045	38	2.2	38	97	0	155	39	2	3	54	1.31
36870079--36870200	60	2.0	60	85	3	165	54	14	0	30	1.47
36870241--36870336	27	3.7	27	83	13	130	55	12	0	32	1.37
36870188--36870346	49	3.3	48	81	7	171	54	14	0	31	1.41
36870268--36870315	22	2.3	20	82	10	62	56	12	0	31	1.37
36870380--36870461	19	4.2	19	77	10	85	54	12	1	31	1.45
36870405--36870459	21	2.7	22	83	10	64	60	9	1	29	1.38
36870782--36870843	27	2.3	27	97	0	115	9	38	24	27	1.86
36870995--36871056	29	2.3	27	80	8	72	22	14	4	58	1.56
36872610--36872656	21	2.1	21	84	7	58	48	2	0	48	1.13
36879367--36879638	136	2.0	136	97	0	508	28	23	23	24	1.99
36882319--36882351	16	2.0	17	88	5	50	36	18	0	45	1.49
36889606--36889708	49	2.1	48	85	5	134	27	16	7	48	1.73
36892167--36892359	77	2.5	77	78	6	205	31	12	19	35	1.90
36893170--36893202	17	1.9	17	100	0	66	48	0	18	33	1.48
36899358--36899417	30	2.0	31	86	3	86	40	0	40	20	1.52
36899517--36899541	5	5.0	5	100	0	50	20	0	80	0	0.72
36899640--36899676	9	4.1	9	85	0	56	29	8	13	48	1.71
36899729--36899759	9	3.4	9	90	0	53	38	22	12	25	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36904125--36904177	27	2.0	26	82	14	63	33	1	0	64	1.05
36904279--36904303	7	3.6	7	100	0	50	88	0	12	0	0.53
36904318--36904367	20	2.5	19	84	9	64	52	16	18	14	1.76
36904579--36904618	20	2.0	20	95	0	71	57	22	15	5	1.57
36904728--36904956	40	5.6	39	66	16	99	53	14	16	15	1.74
36904763--36904900	20	6.8	20	65	15	59	53	16	14	15	1.73
36904886--36904958	20	3.5	20	65	17	51	54	13	16	15	1.71
36905054--36905134	20	4.1	20	64	19	53	54	12	18	14	1.71
36905553--36905652	20	5.0	19	65	10	56	54	12	18	16	1.72
36906509--36906538	9	3.3	9	95	0	51	60	23	0	16	1.36

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144