genome.fa.s11.2.7.7.80.10.50.1000.124.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr6
Parameters: 2 7 7 80 10 50 1000
Length:  44797108

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   

This is table  124  of  144  ( 17221 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38474021--38474453	239	1.8	240	93	2	755	49	4	2	43	1.36
38474375--38474483	54	2.0	54	87	3	157	53	0	1	44	1.11
38474521--38474546	13	2.0	13	100	0	52	30	7	7	53	1.57
38474669--38474718	26	1.9	26	88	8	75	44	0	0	56	0.99
38480097--38480319	43	5.2	43	79	6	206	24	17	26	30	1.97
38480126--38480323	85	2.3	85	84	3	229	25	18	25	30	1.98
38481300--38481769	44	10.7	44	83	4	531	23	25	21	29	1.99
38481301--38481769	175	2.7	175	88	2	647	23	25	21	29	1.99
38481300--38481769	219	2.1	219	95	0	843	23	25	21	29	1.99
38482084--38482137	24	2.2	24	83	6	65	31	25	9	33	1.88
38482560--38482771	108	1.9	110	86	3	304	49	7	16	26	1.72
38494699--38494728	13	2.3	13	94	0	51	0	56	0	43	0.99
38499759--38499800	16	2.6	16	96	0	75	16	0	16	66	1.25
38502216--38502484	33	7.8	33	74	17	201	20	20	26	31	1.98
38502243--38502483	108	2.2	108	93	0	410	21	20	26	32	1.97
38505960--38506060	48	2.1	47	88	1	148	29	4	11	53	1.58
38506613--38506658	6	7.7	6	87	0	65	2	30	45	21	1.64
38507321--38507351	14	2.2	14	94	0	53	41	6	19	32	1.77
38508798--38508861	33	1.9	33	100	0	128	43	12	1	42	1.52
38509318--38509361	17	2.4	19	88	7	65	2	45	0	52	1.13
38509404--38509437	17	2.0	17	88	11	52	0	32	0	67	0.91
38510137--38510161	10	2.5	10	100	0	50	8	0	0	92	0.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38510380--38510438	31	1.9	32	86	6	86	57	11	1	28	1.44
38520229--38520268	19	2.0	20	85	4	55	25	20	7	47	1.75
38521422--38521493	36	2.0	36	97	0	135	50	11	23	15	1.76
38523554--38523578	13	1.9	13	100	0	50	12	24	8	56	1.62
38524385--38525212	132	6.3	132	93	0	1372	28	18	24	28	1.98
38524385--38525212	394	2.1	395	92	1	1374	28	18	24	28	1.98
38529113--38529211	42	2.4	42	91	0	153	36	13	27	23	1.92
38530840--38532657	917	2.0	907	98	1	3510	34	6	19	39	1.77
38532972--38533067	43	2.2	43	83	3	113	30	20	14	34	1.93
38534219--38534304	44	2.0	44	86	9	122	41	1	3	53	1.25
38534241--38534291	26	1.9	27	84	11	70	45	0	3	50	1.20
38534242--38534294	24	2.2	25	86	3	72	45	0	3	50	1.19
38534273--38534310	18	2.0	20	85	10	53	42	0	5	52	1.24
38534426--38534455	9	3.3	9	90	0	51	30	10	13	46	1.75
38534502--38534547	14	3.0	16	75	12	60	52	15	0	32	1.43
38538104--38538158	27	2.0	27	86	6	76	60	5	0	34	1.20
38538124--38538170	17	2.9	16	80	3	58	65	2	0	31	1.04
38538188--38538271	27	3.1	27	73	19	93	67	3	7	21	1.30
38538267--38538330	17	3.4	19	74	12	60	57	4	6	31	1.44
38538250--38538330	36	2.2	37	84	8	112	60	3	6	29	1.38
38538243--38538309	17	3.8	17	73	11	55	64	1	5	28	1.26
38538567--38538617	11	4.9	11	73	22	56	54	0	1	43	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38538567--38538737	40	4.5	39	77	18	191	61	0	2	36	1.09
38538618--38538676	29	2.0	30	93	3	102	66	0	1	32	1.02
38538573--38538700	30	4.3	30	84	7	136	63	0	1	35	1.04
38538614--38538737	9	12.6	9	68	16	68	65	0	2	32	1.06
38538570--38538727	10	15.9	10	67	20	64	61	0	2	36	1.10
38538572--38538736	70	2.3	70	82	5	217	63	0	2	34	1.08
38542944--38542994	25	2.0	25	88	7	77	29	3	3	62	1.31
38542942--38543007	25	2.5	26	78	19	73	30	6	4	59	1.42
38549131--38549190	26	2.3	26	82	0	75	21	18	18	41	1.90
38560242--38560281	20	2.0	20	85	0	53	42	0	5	52	1.23
38562941--38563139	41	4.9	41	76	2	193	22	20	27	30	1.98
38571133--38571166	14	2.3	15	85	5	52	35	0	29	35	1.58
38571256--38571436	96	1.9	96	89	0	281	25	1	30	41	1.65
38571411--38571451	21	1.9	21	90	5	64	17	0	48	34	1.47
38571414--38571452	7	5.6	7	84	0	51	17	0	48	33	1.48
38572398--38572634	123	1.9	124	90	0	377	41	12	11	34	1.78
38572680--38572745	21	3.0	22	76	8	73	24	46	3	25	1.66
38576427--38576606	90	2.0	90	97	0	342	23	25	10	40	1.86
38576704--38576809	43	2.5	43	95	0	185	33	27	16	22	1.96
38576790--38576945	33	4.6	33	70	23	126	33	27	19	19	1.96
38576747--38576949	103	2.0	103	95	0	361	32	28	18	20	1.96
38578198--38578295	43	2.3	43	76	1	99	25	18	26	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38578227--38578361	43	3.1	42	80	4	146	24	16	27	31	1.96
38579984--38580379	196	2.0	196	98	0	765	41	11	18	29	1.85
38582365--38582597	45	5.2	45	96	0	412	38	15	20	25	1.92
38583379--38583422	18	2.5	17	77	3	52	72	4	9	13	1.24
38588722--38588851	45	2.9	45	92	0	215	39	16	19	25	1.91
38591565--38591614	24	2.1	24	88	0	73	38	4	10	48	1.56
38598823--38598874	24	2.2	24	89	0	77	36	3	9	50	1.54
38612434--38612459	5	5.2	5	100	0	52	80	0	19	0	0.71
38613187--38613216	10	2.8	11	95	5	53	86	0	13	0	0.57
38626394--38626431	8	4.4	9	93	3	53	68	5	2	23	1.23
38626403--38626432	4	7.2	4	96	3	51	70	3	0	26	1.03
38643937--38643979	18	2.4	18	85	11	54	34	18	9	37	1.83
38646549--38646592	21	2.0	22	83	12	56	31	4	13	50	1.62
38652271--38652326	29	2.0	28	89	6	87	35	14	12	37	1.84
38655473--38655520	20	2.2	21	85	10	62	43	2	2	52	1.24
38666809--38666886	38	2.0	39	90	2	122	33	10	10	46	1.72
38671686--38671723	20	1.9	20	88	0	58	44	0	10	44	1.38
38674918--38675263	29	11.9	28	78	7	291	39	13	24	21	1.90
38674911--38675264	87	4.1	87	86	1	478	39	13	24	21	1.90
38674941--38675263	58	5.6	58	82	2	362	39	13	25	21	1.90
38681616--38681674	30	2.0	30	83	6	75	50	10	5	33	1.58
38692001--38693537	592	2.6	592	98	0	2966	29	17	20	31	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38693994--38695199	600	2.0	600	99	0	2376	29	17	20	32	1.96
38700630--38700656	3	9.0	3	100	0	54	66	0	0	33	0.92
38701607--38701642	18	2.0	18	88	0	54	69	8	2	19	1.27
38702235--38702277	22	2.0	21	82	13	52	44	2	4	48	1.36
38703279--38703631	126	2.8	126	90	0	555	30	16	21	31	1.95
38706793--38707251	29	18.3	23	71	21	192	28	0	25	45	1.58
38706835--38706892	21	2.7	21	89	2	89	24	1	24	50	1.59
38707012--38707071	21	2.9	21	95	5	104	25	0	25	50	1.50
38706793--38707143	177	2.0	176	92	0	576	27	0	26	45	1.60
38707056--38707247	81	2.4	81	86	1	269	28	1	26	44	1.61
38706882--38707224	29	11.9	29	74	16	277	28	0	25	45	1.58
38706878--38707247	52	7.0	51	70	21	214	28	0	25	45	1.58
38708107--38708131	7	3.6	7	100	0	50	60	12	0	28	1.32
38708303--38709300	509	2.0	509	94	0	1755	26	25	20	27	1.99
38709743--38709788	12	3.9	12	82	2	58	58	0	0	41	0.98
38709743--38709788	24	1.9	24	86	0	65	58	0	0	41	0.98
38709042--38710537	748	2.0	748	94	0	2611	30	23	17	28	1.97
38710491--38710536	12	3.9	12	82	2	58	58	0	0	41	0.98
38710491--38710536	24	1.9	24	86	0	65	58	0	0	41	0.98
38710540--38710581	11	3.8	11	87	0	66	54	7	19	19	1.66
38710540--38710629	11	8.2	11	74	9	60	47	4	24	23	1.70
38710540--38710629	22	4.1	22	76	8	76	47	4	24	23	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38711721--38711776	20	2.9	19	84	10	62	55	10	0	33	1.35
38711721--38711785	19	3.3	20	81	10	73	53	10	0	35	1.36
38713086--38713127	19	2.2	20	87	8	61	64	0	2	33	1.07
38713582--38713651	20	3.7	20	72	18	60	37	4	2	55	1.34
38713615--38713652	20	1.9	20	94	0	67	42	0	0	57	0.98
38716064--38716118	28	2.0	26	82	6	65	63	7	9	20	1.47
38716140--38716456	157	2.0	157	100	0	634	42	13	7	35	1.73
38725489--38725526	17	2.2	17	86	9	51	55	15	0	28	1.41
38730095--38730149	27	2.0	28	82	10	69	60	12	9	18	1.58
38738148--38738469	147	2.2	146	80	1	358	28	21	20	29	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144