genome.fa.s25.2.7.7.80.10.50.1000.10.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D12
Parameters: 2 7 7 80 10 50 1000
Length:  58873029

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   

This is table  10  of  196  ( 23409 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2901885--2901923	20	2.0	20	85	10	53	43	15	5	35	1.69
2905473--2905529	20	2.8	21	79	12	66	49	3	10	36	1.55
2906583--2906634	19	2.7	19	79	8	61	21	17	21	40	1.91
2908534--2908573	20	2.0	20	90	0	62	30	10	10	50	1.69
2909282--2909322	21	2.0	21	85	9	57	51	0	4	43	1.23
2910203--2910255	18	2.9	18	77	5	54	75	15	0	9	1.04
2910203--2910242	19	2.2	19	86	4	55	75	15	0	10	1.05
2919800--2919832	11	2.8	12	86	9	50	30	0	0	69	0.88
2919954--2920018	30	2.2	30	91	5	105	61	13	1	23	1.41
2920298--2920338	20	2.0	20	86	9	57	39	12	7	41	1.70
2920845--2920912	23	3.2	20	71	20	50	51	7	0	41	1.30
2936053--2936110	24	2.5	23	81	16	66	62	0	5	32	1.18
2936381--2936489	49	2.2	49	93	4	186	31	7	31	30	1.85
2936607--2936685	37	2.1	37	90	0	122	24	18	31	25	1.98
2940366--2940504	40	3.5	40	75	11	135	30	24	16	28	1.96
2940399--2940505	37	2.7	41	77	10	123	33	23	14	28	1.94
2941639--2941671	16	2.1	16	94	0	57	0	27	0	72	0.85
2956522--2956617	29	3.2	29	72	18	106	46	4	2	46	1.33
2956515--2956627	61	1.9	59	96	3	208	47	4	1	46	1.33
2964816--2964868	16	3.2	16	78	5	52	39	7	0	52	1.30
2968329--2968553	90	2.5	89	90	2	337	39	21	16	22	1.92
2970757--2970787	11	2.8	11	90	0	53	6	6	12	74	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2970781--2970821	11	3.7	11	86	0	64	26	9	2	60	1.40
2970773--2970829	22	2.6	22	72	10	62	21	8	5	64	1.41
2970757--2970829	11	6.6	11	82	3	51	17	8	8	65	1.43
2970861--2970920	30	2.0	30	96	0	111	25	3	15	56	1.54
2971042--2971067	11	2.4	11	100	0	52	73	0	0	26	0.84
2978972--2979043	28	2.5	29	74	19	71	34	5	5	54	1.47
2991711--2992008	44	6.9	44	72	10	195	32	20	21	26	1.98
2991798--2992130	174	1.9	170	86	6	474	32	20	20	26	1.97
2994144--2994198	20	2.7	22	78	16	73	21	10	7	60	1.55
2995887--2995922	16	2.2	16	90	0	54	38	2	8	50	1.47
3001362--3001389	8	3.5	8	100	0	56	64	0	0	35	0.94
3001666--3001698	16	2.1	16	88	11	50	45	3	0	51	1.16
3005585--3005635	13	3.9	13	84	0	66	21	13	25	39	1.90
3005585--3005635	26	2.0	26	88	0	75	21	13	25	39	1.90
3006219--3006262	22	2.0	22	86	4	63	43	4	11	40	1.61
3012851--3012896	20	2.3	20	81	7	58	36	17	8	36	1.81
3017694--3017732	12	3.2	13	85	14	64	64	0	0	35	0.94
3018019--3018122	52	2.0	52	100	0	208	25	19	26	28	1.98
3026048--3026510	229	2.0	229	99	0	917	30	12	22	34	1.91
3034495--3034598	55	1.9	54	86	5	147	43	0	3	51	1.26
3039751--3039948	41	4.8	41	89	0	297	30	29	21	18	1.97
3040093--3040422	47	6.6	47	70	16	196	39	15	6	39	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3040073--3040279	100	2.1	100	93	0	351	40	13	5	40	1.67
3054361--3054397	17	2.2	17	90	0	56	35	10	5	48	1.61
3059552--3059618	27	2.5	27	97	0	125	31	20	32	14	1.93
3060005--3060045	6	6.8	6	94	0	73	48	2	17	31	1.60
3061249--3061515	91	2.9	91	82	4	299	39	16	9	34	1.81
3061862--3062072	10	22.0	9	66	18	63	31	4	2	61	1.29
3061953--3062015	19	3.4	19	79	14	69	34	1	1	61	1.15
3061926--3062036	29	3.8	30	78	14	101	36	1	0	61	1.13
3061983--3062048	28	2.3	29	85	12	84	37	1	0	60	1.06
3061965--3062048	29	2.9	29	84	13	86	36	1	1	60	1.12
3064506--3064655	19	7.8	19	73	3	93	43	22	6	28	1.78
3064507--3064614	39	2.8	38	84	4	128	44	20	5	29	1.74
3080980--3081053	37	2.0	37	82	10	89	36	14	28	20	1.92
3081047--3081328	44	6.5	44	75	9	213	29	21	21	28	1.99
3081049--3081287	129	1.9	128	79	6	277	28	21	21	27	1.99
3081017--3081471	173	2.6	175	85	4	573	29	20	23	26	1.99
3083499--3083695	98	2.0	98	95	2	351	27	10	24	37	1.88
3085845--3085880	18	2.0	18	94	0	63	27	13	16	41	1.87
3102878--3102920	19	2.2	19	84	16	52	53	0	4	41	1.21
3108563--3108618	27	2.1	27	86	0	76	42	14	17	25	1.87
3111845--3111872	6	4.7	6	100	0	56	17	0	0	82	0.68
3117341--3117401	31	2.0	31	93	0	104	16	27	22	32	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3126334--3126547	51	4.2	50	86	3	304	29	21	14	33	1.94
3132114--3132422	44	6.6	44	81	13	300	30	15	24	29	1.95
3132121--3132424	51	6.3	51	86	8	413	30	14	25	29	1.95
3132842--3132998	29	5.3	30	72	13	112	33	21	5	40	1.75
3133358--3133395	12	2.9	13	88	7	51	76	0	23	0	0.79
3133495--3133568	4	18.0	4	76	15	71	71	2	25	0	0.99
3133495--3133574	31	2.6	30	86	9	108	72	2	25	0	0.97
3133496--3133564	23	3.0	23	81	10	72	72	2	24	0	0.98
3133996--3134038	9	4.7	9	78	16	52	13	0	4	81	0.84
3134320--3134405	18	4.8	18	75	14	81	31	12	9	46	1.74
3134329--3134371	20	2.2	19	87	8	59	39	11	9	39	1.74
3134320--3134405	17	4.8	17	74	14	66	31	12	9	46	1.74
3134367--3134486	38	3.1	38	77	11	118	35	11	7	45	1.69
3134445--3134484	17	2.3	17	86	4	53	37	15	7	40	1.75
3134384--3134525	38	3.7	38	77	11	128	35	11	9	43	1.73
3134568--3134681	20	6.3	17	72	16	61	35	8	11	43	1.72
3134545--3134624	37	2.1	38	83	4	99	40	7	10	42	1.67
3134558--3134642	37	2.2	38	83	6	100	40	10	10	38	1.74
3134555--3134673	56	2.1	58	85	6	163	35	9	11	43	1.73
3134609--3134715	36	2.9	37	85	8	130	36	10	10	42	1.73
3134676--3134719	21	2.1	20	87	8	61	52	6	6	34	1.55
3140081--3140149	1	69.0	1	76	0	57	86	10	2	0	0.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3140081--3140137	9	6.6	9	83	4	73	87	12	0	0	0.54
3140081--3140137	11	5.4	10	84	12	78	87	12	0	0	0.54
3140081--3140149	13	5.4	13	78	11	63	86	10	2	0	0.66
3140081--3140149	22	3.2	21	86	10	86	86	10	2	0	0.66
3141032--3142358	77	17.5	74	88	5	1376	26	15	21	36	1.94
3142560--3142649	29	3.1	28	82	6	99	33	23	3	40	1.71
3143156--3143226	4	17.8	4	73	21	60	73	1	25	0	0.92
3143159--3143217	13	4.8	13	78	17	72	74	0	25	0	0.82
3143156--3143229	18	4.2	17	85	11	87	72	1	25	0	0.92
3143168--3143225	6	9.8	6	78	10	66	72	1	25	0	0.94
3143659--3143700	9	4.6	9	77	16	50	11	0	4	83	0.79
3143993--3144035	21	2.1	20	91	4	68	39	11	9	39	1.74
3144032--3144195	37	4.3	38	76	15	169	34	12	10	42	1.77
3144032--3144306	37	7.0	37	73	15	164	34	11	10	42	1.76
3144032--3144194	75	2.1	75	86	6	231	34	12	10	42	1.76
3144232--3144378	20	8.2	17	70	15	66	37	8	10	42	1.71
3144222--3144306	40	2.2	37	81	6	66	40	10	10	38	1.74
3144219--3144337	56	2.1	58	85	6	163	35	9	11	43	1.73
3144269--3144377	36	3.1	33	83	12	137	37	10	10	42	1.72
3145310--3145567	131	2.0	132	96	0	473	37	10	8	43	1.71
3152318--3152388	35	2.0	35	97	0	133	38	11	4	46	1.59
3155532--3155568	19	2.0	20	89	10	60	54	8	5	32	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3160776--3160824	26	1.9	25	88	12	73	18	6	8	67	1.37
3160780--3160828	23	2.1	24	85	11	66	18	6	8	67	1.37
3160776--3160831	26	2.2	26	84	12	71	16	8	7	67	1.39
3167017--3167069	22	2.2	23	80	12	54	37	1	3	56	1.28
3171175--3171294	45	2.7	45	78	8	120	38	14	19	28	1.90
3171256--3171413	31	5.1	31	75	4	140	37	15	17	29	1.91
3171254--3171413	62	2.6	62	80	2	178	38	15	17	28	1.91
3171947--3172056	54	2.0	54	100	0	220	21	20	12	44	1.85
3177787--3177845	29	2.0	30	90	3	93	49	13	5	32	1.64
3178048--3178081	17	2.0	17	94	0	59	61	0	5	32	1.20

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196