genome.fa.s25.2.7.7.80.10.50.1000.140.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D12
Parameters: 2 7 7 80 10 50 1000
Length:  58873029

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   

This is table  140  of  196  ( 23409 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41444268--41444951	170	4.0	170	98	0	1287	25	16	17	40	1.90
41445236--41445279	20	2.2	21	80	12	56	56	6	0	36	1.26
41446452--41446495	19	2.2	20	88	4	63	88	4	2	4	0.68
41446595--41446778	18	10.0	17	66	21	54	65	0	33	1	1.00
41446597--41446781	10	17.8	10	67	15	54	66	0	32	1	0.99
41446628--41446724	5	20.0	5	77	9	53	61	0	36	2	1.07
41446615--41446778	38	4.4	38	81	5	176	65	0	32	1	1.00
41446656--41446785	34	3.7	34	75	14	113	66	0	31	1	1.01
41446691--41446753	24	2.6	24	77	5	65	71	0	26	1	0.95
41447459--41447511	18	2.8	19	88	5	81	30	0	3	66	1.10
41447547--41447613	26	2.5	27	88	7	102	43	10	0	46	1.38
41447625--41447663	20	2.0	20	89	0	60	87	7	2	2	0.73
41449503--41449553	23	2.2	24	89	10	88	52	0	7	39	1.30
41451207--41451258	17	3.1	16	79	20	61	48	1	1	48	1.24
41451179--41451258	17	4.5	17	70	26	60	46	1	1	51	1.17
41452142--41452181	14	2.8	14	88	3	53	27	0	2	70	1.01
41453986--41454019	3	11.0	3	93	6	59	35	64	0	0	0.94
41462473--41462511	18	2.1	19	85	4	53	33	0	0	66	0.92
41467658--41467687	14	2.1	14	93	0	51	23	13	13	50	1.77
41468816--41468896	40	2.0	40	100	0	162	35	19	4	39	1.74
41469605--41469677	24	3.0	24	75	13	69	35	21	24	17	1.95
41469833--41469873	19	2.1	19	86	4	55	39	7	4	48	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41475760--41475797	16	2.2	18	90	9	62	39	10	5	44	1.61
41476887--41477039	76	2.0	76	97	0	288	36	12	11	39	1.80
41483461--41483569	9	11.4	9	82	11	110	14	16	52	16	1.75
41484463--41484649	93	2.0	93	100	0	374	19	19	19	42	1.90
41484798--41484829	16	2.1	16	88	11	50	46	6	9	37	1.61
41484951--41485003	20	2.7	20	94	5	90	35	0	5	58	1.22
41485118--41485162	23	2.0	23	91	8	74	26	8	17	46	1.78
41494231--41494258	14	2.0	14	100	0	56	28	35	7	28	1.84
41494830--41494990	46	3.6	46	94	3	267	28	22	15	32	1.95
41503011--41503059	25	2.0	25	83	0	62	22	10	2	65	1.34
41510997--41511049	27	2.0	27	84	0	70	22	28	30	18	1.98
41513198--41513330	60	2.2	60	93	1	221	55	10	0	33	1.39
41513414--41513469	13	4.2	13	76	15	60	0	30	0	69	0.89
41513419--41513470	27	1.9	27	85	14	72	0	34	0	65	0.93
41520896--41520934	19	2.1	19	90	4	62	84	2	0	12	0.72
41533372--41533438	34	1.9	35	87	3	100	31	8	14	44	1.76
41534434--41534460	13	2.1	13	100	0	54	22	29	22	25	1.99
41544000--41544163	43	3.8	44	75	12	135	25	17	26	31	1.97
41544046--41544155	42	2.6	42	77	9	116	27	17	24	30	1.97
41546835--41546864	13	2.2	14	94	5	53	43	0	6	50	1.28
41555766--41555924	26	6.4	26	71	13	111	18	19	22	39	1.92
41560665--41560813	76	2.0	76	82	7	187	36	6	18	38	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41560991--41561069	41	1.9	41	82	5	97	22	17	25	34	1.96
41565088--41565145	26	2.3	26	84	3	73	51	29	0	18	1.47
41565335--41565526	14	13.7	14	65	16	58	46	31	1	19	1.59
41565343--41565426	33	2.5	33	83	9	100	47	32	3	16	1.64
41565400--41565451	25	2.1	25	82	7	61	44	36	1	17	1.60
41565414--41565488	27	2.9	27	75	13	86	46	33	0	20	1.51
41565987--41566036	19	2.6	19	87	9	75	38	48	0	14	1.44
41567395--41567421	14	1.9	14	100	0	54	29	7	7	55	1.55
41576833--41576872	21	1.9	21	84	0	53	82	2	5	10	0.91
41584480--41584759	41	6.8	41	90	5	381	28	24	20	27	1.99
41591902--41591939	17	2.1	19	85	9	53	44	7	5	42	1.56
41597408--41597505	50	2.0	50	87	0	142	35	11	9	43	1.72
41606646--41606675	6	5.0	6	100	0	60	50	0	0	50	1.00
41615920--41615984	21	3.1	21	93	0	112	23	24	12	40	1.89
41618750--41618782	5	6.4	5	96	3	57	45	0	0	54	0.99
41635442--41635518	39	1.9	39	87	10	111	27	11	2	58	1.46
41636851--41636971	11	11.9	11	70	22	70	38	0	0	60	1.03
41636843--41636957	38	3.0	37	82	8	133	35	0	0	63	1.01
41636822--41636932	17	6.7	17	67	20	65	36	0	0	62	1.02
41636882--41636943	27	2.3	27	94	2	106	38	0	0	61	0.96
41636925--41636972	24	1.9	25	91	8	80	41	0	0	58	0.98
41637605--41637655	16	3.1	16	78	15	59	60	0	1	37	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41640325--41640355	15	2.0	16	93	6	55	45	6	3	45	1.45
41652495--41652520	3	8.7	3	100	0	52	34	30	0	34	1.58
41654156--41654247	45	2.0	45	95	0	166	33	8	21	35	1.84
41654268--41654318	26	2.0	25	85	7	68	37	0	1	60	1.08
41655648--41655887	51	4.7	51	81	4	288	29	13	26	30	1.94
41655648--41655920	51	5.4	50	75	7	246	30	12	26	30	1.93
41655644--41655887	102	2.4	102	94	1	427	29	14	26	29	1.95
41656079--41656151	37	1.9	38	86	2	103	42	2	23	31	1.68
41662569--41662672	54	1.9	53	81	9	122	27	25	25	21	1.99
41670403--41670491	30	3.1	30	81	14	98	26	24	5	42	1.77
41670414--41670493	25	2.9	29	81	16	114	26	22	6	45	1.76
41672999--41673051	2	26.5	2	100	0	106	0	49	0	50	1.00
41682415--41682446	15	2.1	16	94	5	57	78	0	0	21	0.76
41689259--41689295	18	2.1	18	90	10	58	62	0	5	32	1.18
41692099--41692184	41	2.1	41	100	0	172	31	9	25	33	1.88
41693578--41693616	15	2.8	14	88	7	53	0	17	2	79	0.84
41699734--41699773	18	2.2	18	90	0	62	30	0	0	70	0.88
41699726--41699773	8	5.8	8	83	9	51	31	0	0	68	0.90
41699760--41699819	32	1.9	31	83	10	77	33	1	1	63	1.14
41701148--41701178	4	7.8	4	92	0	53	70	29	0	0	0.87
41708528--41708569	16	2.7	16	81	3	50	57	0	0	42	0.99
41709345--41709374	2	15.0	2	100	0	60	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41718601--41718653	28	1.9	28	84	3	72	60	7	1	30	1.35
41720107--41720265	43	3.7	42	89	2	228	35	20	18	26	1.95
41720109--41720265	85	1.8	85	89	4	244	34	20	18	26	1.96
41720649--41720694	21	2.2	21	88	0	65	6	43	15	34	1.72
41725512--41725589	9	9.1	9	71	10	65	30	2	23	43	1.67
41725518--41725567	25	2.0	25	84	0	64	32	0	22	46	1.52
41725512--41725588	34	2.3	34	84	4	93	31	2	23	42	1.68
41727226--41727276	19	2.7	19	96	0	93	47	0	5	47	1.26
41727418--41727466	25	1.9	26	87	4	73	22	2	4	71	1.13
41727428--41727473	13	3.7	12	82	8	56	26	2	0	71	0.97
41728146--41728222	38	2.0	38	100	0	154	38	5	2	53	1.37
41728886--41728916	15	2.1	15	93	0	53	35	45	0	19	1.51
41729304--41729477	73	2.4	74	89	1	262	25	27	21	25	2.00
41729212--41729596	187	2.1	188	91	2	623	24	26	23	25	2.00
41729382--41729933	114	4.9	114	86	2	761	25	26	22	26	2.00
41729832--41729988	74	2.2	71	87	3	215	24	24	22	28	1.99
41740473--41740519	20	2.3	20	81	0	58	63	2	2	31	1.18
41746638--41746676	6	6.5	6	96	0	69	0	64	17	17	1.30
41751297--41751323	2	13.5	2	100	0	54	51	0	48	0	1.00
41753563--41753791	126	1.8	128	83	4	286	52	10	13	22	1.71
41754944--41754983	20	2.0	20	85	0	53	50	2	2	45	1.28
41755910--41755934	7	3.6	7	100	0	50	48	0	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41755904--41755942	14	2.8	14	76	0	51	56	0	5	38	1.22
41763320--41763368	16	3.0	16	75	3	53	73	0	14	12	1.10
41764167--41764204	18	2.2	18	90	9	62	21	5	2	71	1.19
41768854--41768892	18	2.2	18	95	4	71	61	5	7	25	1.44
41768853--41768892	17	2.2	19	86	13	66	62	5	7	25	1.42
41774714--41774752	9	4.3	9	90	0	60	46	5	10	38	1.60
41774818--41774847	12	2.6	12	94	5	53	73	13	0	13	1.10
41777161--41777193	15	2.2	15	100	0	66	24	6	18	51	1.68
41777462--41777493	13	2.3	15	89	10	50	43	0	0	56	0.99
41782072--41782196	58	2.2	57	92	2	207	44	4	21	29	1.70

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196