genome.fa.s25.2.7.7.80.10.50.1000.192.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D12
Parameters: 2 7 7 80 10 50 1000
Length:  58873029

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   

This is table  192  of  196  ( 23409 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57193510--57193540	15	2.1	15	93	0	53	41	0	0	58	0.98
57199117--57199145	14	2.0	15	93	6	51	55	0	3	41	1.17
57200290--57200369	39	2.2	33	78	12	88	57	3	2	36	1.30
57204994--57205033	19	2.0	19	85	9	53	50	0	0	50	1.00
57207563--57207622	25	2.4	26	86	10	81	30	1	15	53	1.51
57211880--57211944	32	2.0	32	100	0	130	36	12	12	38	1.80
57221254--57221278	10	2.5	10	100	0	50	36	20	32	12	1.89
57240530--57240606	31	2.5	31	89	0	118	53	5	9	32	1.55
57240530--57240620	31	2.9	31	85	3	103	49	5	8	36	1.57
57241204--57241247	11	4.0	11	82	17	56	40	2	0	56	1.11
57241202--57241248	22	2.2	22	88	11	71	38	2	0	59	1.09
57241703--57241729	4	6.8	4	100	0	54	51	22	0	25	1.48
57249359--57249427	28	2.4	28	77	13	70	34	11	2	50	1.54
57253032--57253079	24	2.0	24	100	0	96	33	20	16	29	1.95
57266239--57266292	22	2.6	20	78	16	56	59	3	7	29	1.42
57267687--57267752	31	2.1	30	83	10	80	33	15	13	37	1.86
57276753--57276789	12	3.2	12	96	3	67	24	27	13	35	1.93
57282560--57282618	31	1.9	31	85	0	82	37	13	8	40	1.75
57288235--57288301	31	2.1	32	81	13	77	49	5	2	41	1.42
57301703--57301873	86	2.0	85	98	1	333	49	17	14	18	1.80
57303430--57303463	17	2.0	17	88	0	50	23	0	5	70	1.09
57305087--57305116	15	2.0	15	93	0	51	70	0	23	6	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57311975--57312021	6	7.8	6	100	0	94	17	48	17	17	1.81
57312665--57312736	28	2.6	28	79	12	69	54	4	2	38	1.34
57315445--57315494	25	2.0	25	100	0	100	56	20	0	24	1.43
57325526--57325676	20	7.6	20	65	16	71	34	9	1	53	1.45
57325466--57325776	100	3.1	100	92	1	496	34	9	3	53	1.50
57325731--57325768	20	1.9	20	88	0	58	31	13	0	55	1.38
57325528--57325775	50	5.0	50	72	12	222	33	10	3	52	1.51
57325803--57325842	20	2.1	19	86	13	55	40	0	0	60	0.97
57335362--57335427	31	2.1	31	83	10	82	34	7	13	43	1.73
57336665--57336712	25	1.9	25	83	8	62	58	6	10	25	1.54
57342645--57342755	55	2.0	55	100	0	222	27	23	25	24	2.00
57349750--57349788	20	2.0	20	94	0	69	38	0	0	61	0.96
57353699--57353765	34	1.9	35	84	3	91	43	13	10	32	1.78
57355555--57355589	18	1.9	18	88	0	52	68	0	2	28	1.04
57357777--57357803	12	2.2	12	100	0	54	11	14	18	55	1.68
57358779--57358806	7	4.0	7	100	0	56	28	0	57	14	1.38
57359596--57359620	11	2.3	11	100	0	50	64	0	8	28	1.22
57362035--57362062	12	2.3	12	100	0	56	46	0	0	53	1.00
57366202--57366247	23	2.0	23	100	0	92	30	8	8	52	1.62
57377704--57377760	29	1.9	30	85	3	80	56	10	3	29	1.50
57378949--57379009	29	2.1	29	85	8	81	24	14	16	44	1.85
57381501--57381553	26	2.0	26	88	0	79	39	24	3	32	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57382745--57382788	24	1.9	22	86	9	61	36	0	9	54	1.32
57382918--57382959	22	2.0	22	85	4	59	64	2	11	21	1.38
57382918--57382962	21	2.1	21	84	8	56	66	2	11	20	1.33
57383355--57383427	33	2.1	35	82	9	89	41	2	5	50	1.40
57392102--57392224	12	10.2	12	85	3	149	68	0	31	0	0.90
57392882--57392908	14	1.9	14	100	0	54	59	3	14	22	1.51
57393367--57393428	28	2.2	28	85	8	81	43	4	1	50	1.33
57393383--57393441	28	2.1	28	87	0	82	40	8	1	49	1.43
57397753--57397851	49	2.0	49	98	0	189	21	8	31	39	1.82
57405333--57405799	156	3.0	154	85	3	630	26	22	21	28	1.99
57427264--57427329	4	16.5	4	100	0	132	50	25	0	24	1.50
57428776--57428837	31	2.0	32	83	3	81	48	6	9	35	1.62
57452533--57452759	122	1.8	124	84	3	316	27	11	17	44	1.82
57455046--57455095	25	2.0	25	96	0	91	50	0	4	46	1.20
57463610--57463707	33	2.9	35	73	19	91	46	4	0	48	1.20
57463658--57463714	30	1.9	30	82	13	73	47	3	0	49	1.18
57463852--57463878	13	2.1	13	100	0	54	40	14	7	37	1.74
57470003--57470045	17	2.6	16	78	10	50	67	2	0	30	1.03
57470414--57470483	29	2.5	28	74	4	70	45	1	5	47	1.35
57481885--57481939	22	2.5	22	96	0	101	40	20	7	32	1.80
57490751--57490792	16	2.6	17	85	7	52	40	21	2	35	1.66
57495959--57496100	41	3.4	41	81	7	151	26	15	27	30	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57496042--57496244	44	4.6	44	87	3	286	21	19	28	30	1.98
57502455--57502574	56	2.1	57	89	4	190	35	14	6	43	1.71
57508793--57508860	24	2.7	24	86	6	82	50	13	0	36	1.42
57510843--57510884	21	2.0	20	86	13	59	69	0	0	30	0.89
57511881--57511921	16	2.5	17	80	11	59	31	0	0	68	0.90
57513364--57513423	31	1.9	32	82	3	77	23	11	8	56	1.61
57513571--57513631	20	3.2	20	68	17	58	52	8	0	39	1.31
57513746--57513815	29	2.3	29	87	4	95	35	10	12	41	1.77
57513768--57513828	29	2.1	29	87	3	86	34	8	13	44	1.73
57513946--57514013	31	2.1	31	81	5	73	44	5	8	41	1.60
57519915--57519944	3	10.0	3	100	0	60	0	33	0	66	0.92
57521194--57521240	23	2.0	23	84	8	60	51	2	0	46	1.13
57526469--57526512	16	2.8	17	80	13	58	4	15	9	70	1.30
57526449--57526512	31	2.0	34	85	14	91	4	18	6	70	1.27
57526535--57526600	7	8.6	7	78	18	53	53	1	1	43	1.19
57526522--57526600	27	2.8	31	76	20	91	49	2	1	46	1.23
57526532--57526597	8	8.4	8	70	21	50	51	1	1	45	1.19
57529282--57529327	20	2.4	20	85	7	60	58	0	2	39	1.10
57529635--57529678	22	2.0	21	91	4	70	40	4	13	40	1.65
57530602--57530641	18	2.1	20	86	9	57	27	5	0	67	1.11
57530617--57530681	3	21.7	3	77	17	64	30	4	3	61	1.31
57533107--57533282	45	4.2	40	81	15	173	19	19	21	39	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57533134--57533284	45	3.3	45	91	0	230	19	19	20	41	1.91
57539564--57539589	11	2.4	11	100	0	52	50	7	42	0	1.31
57540309--57540396	39	2.2	40	84	9	110	36	7	18	37	1.80
57540570--57540745	45	4.2	40	81	15	173	19	19	21	39	1.92
57540597--57540747	45	3.3	45	91	0	230	19	19	20	41	1.91
57547267--57547297	16	1.9	16	93	0	53	48	22	0	29	1.51
57551075--57551203	39	3.3	39	94	2	213	55	6	1	37	1.35
57551183--57551215	17	1.9	17	100	0	66	42	0	0	57	0.98
57554485--57554525	21	2.0	21	90	0	64	19	29	21	29	1.98
57559578--57559634	25	2.3	25	96	0	105	21	3	12	63	1.43
57559757--57559809	9	6.2	9	79	16	51	71	1	0	26	0.96
57559762--57559809	16	3.0	16	87	0	69	72	2	0	25	0.95
57560584--57560691	15	7.2	15	65	12	69	45	7	21	25	1.78
57560578--57560701	30	4.1	30	91	1	194	44	6	23	25	1.77
57565277--57565384	15	7.2	15	65	12	69	45	7	21	25	1.78
57565273--57565384	30	3.7	30	91	2	172	46	7	21	25	1.76
57565271--57565394	60	2.0	61	90	4	198	44	6	23	25	1.77
57566960--57567000	20	2.0	20	100	0	82	14	19	21	43	1.87
57569161--57569201	17	2.2	19	83	12	50	26	2	4	65	1.25
57570187--57570216	15	1.9	16	93	6	53	26	0	0	73	0.84
57570745--57570779	16	2.2	16	89	0	52	51	8	2	37	1.47
57582353--57582394	21	2.0	21	100	0	84	47	4	19	28	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57591786--57591852	34	1.9	35	87	3	100	44	14	8	31	1.76
57592627--57592666	21	1.9	21	100	0	80	55	5	2	37	1.35
57595458--57595541	31	2.8	31	83	7	93	53	5	3	36	1.43
57598696--57598732	16	2.4	15	86	8	56	32	0	0	67	0.91
57602872--57602913	23	1.9	23	85	9	61	38	0	9	52	1.34
57603589--57603614	8	3.2	8	100	0	52	53	0	0	46	1.00
57616598--57616622	10	2.5	10	100	0	50	60	0	0	40	0.97
57622985--57623042	28	2.1	28	100	0	116	32	6	17	43	1.75
57631830--57631869	6	6.7	6	88	0	53	25	17	52	5	1.64
57631830--57631877	12	4.0	12	86	0	69	22	16	54	6	1.65

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196