genome.fa.s25.2.7.7.80.10.50.1000.35.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D12
Parameters: 2 7 7 80 10 50 1000
Length:  58873029

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   

This is table  35  of  196  ( 23409 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9709485--9709539	9	6.3	9	83	8	69	36	1	16	45	1.58
9709414--9709533	16	7.9	16	65	19	69	35	2	17	44	1.62
9709565--9709730	56	3.0	56	98	0	314	40	1	10	46	1.46
9709655--9709700	22	2.1	22	95	0	83	41	0	10	47	1.38
9709794--9709834	13	2.8	15	85	14	59	34	0	19	46	1.50
9709793--9709871	16	5.0	16	76	13	74	34	1	16	48	1.55
9712454--9712490	10	3.7	10	92	0	65	43	13	0	43	1.44
9714214--9714250	15	2.5	15	100	0	74	35	51	0	13	1.41
9714802--9715084	83	3.4	83	79	4	288	37	22	22	16	1.93
9714800--9715084	82	3.5	81	79	5	295	37	22	23	16	1.93
9714765--9715084	41	7.8	41	73	9	201	37	22	23	16	1.94
9715883--9715941	18	3.2	17	77	20	57	40	0	6	52	1.28
9718088--9718151	15	4.2	15	78	7	67	26	6	1	65	1.25
9719091--9719115	5	5.0	5	100	0	50	20	0	0	80	0.72
9719765--9719799	18	1.9	18	94	0	61	57	0	0	42	0.99
9719761--9719803	12	3.5	13	84	9	54	53	0	0	46	1.00
9720926--9721011	43	2.0	43	97	0	163	34	15	20	29	1.93
9721061--9721134	38	1.9	38	91	0	121	37	21	10	29	1.88
9724308--9724405	43	2.3	43	87	0	142	39	16	16	27	1.90
9727186--9727245	28	2.2	28	85	8	79	70	10	0	20	1.16
9727203--9727248	20	2.3	20	85	7	58	69	13	0	17	1.19
9727824--9727885	31	2.0	30	87	3	88	62	8	11	17	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9729079--9729120	6	7.0	6	91	0	66	71	0	0	28	0.86
9733000--9733029	11	2.7	11	100	0	60	46	0	6	46	1.29
9732996--9733036	11	3.8	11	90	3	57	46	0	4	48	1.23
9736029--9736236	91	2.3	91	90	0	317	46	3	4	45	1.41
9736151--9736211	28	2.2	28	85	5	81	45	0	3	50	1.17
9736371--9736405	18	2.0	17	88	5	52	45	0	0	54	0.99
9736494--9736545	15	3.6	15	80	12	56	44	0	1	53	1.11
9736610--9736644	18	2.0	17	88	5	52	45	0	0	54	0.99
9736252--9737141	120	7.4	120	96	0	1597	42	2	5	49	1.39
9736672--9736865	69	3.1	69	62	25	172	42	2	7	48	1.42
9736734--9736785	15	3.6	15	80	12	56	44	0	1	53	1.11
9736850--9736884	18	2.0	17	88	5	52	45	0	0	54	0.99
9736974--9737025	15	3.6	15	80	12	56	44	0	1	53	1.11
9737104--9737144	15	2.6	16	81	14	50	43	0	2	53	1.13
9737364--9737394	16	1.9	16	100	0	62	19	38	3	38	1.68
9740040--9740077	3	12.7	3	94	0	67	2	34	0	63	1.09
9741287--9741325	19	2.1	18	90	4	60	58	7	0	33	1.26
9741315--9741357	22	2.0	21	82	13	52	65	9	2	23	1.34
9744175--9744275	45	2.2	45	89	0	148	37	15	19	26	1.92
9744191--9744291	45	2.2	45	91	0	157	38	11	19	29	1.88
9746665--9746929	103	2.6	104	90	3	417	29	29	20	19	1.97
9747257--9747321	30	2.2	29	81	8	76	30	27	6	35	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9747264--9747321	30	1.9	30	85	0	80	31	24	6	37	1.82
9754155--9754419	103	2.6	104	90	3	417	29	29	20	19	1.97
9754747--9754811	30	2.2	29	81	8	76	30	27	6	35	1.81
9754754--9754811	30	1.9	30	85	0	80	31	24	6	37	1.82
9759941--9759995	25	2.2	25	77	6	58	23	3	7	65	1.34
9765483--9765527	22	2.0	23	82	4	56	40	4	13	42	1.64
9765976--9766035	30	2.0	31	86	3	86	43	5	15	36	1.68
9775198--9775222	3	8.3	3	100	0	50	68	0	0	32	0.90
9775354--9775394	17	2.4	17	83	0	55	70	7	4	17	1.28
9778595--9778717	63	2.0	63	100	0	246	30	1	14	53	1.51
9782833--9782987	78	2.0	78	97	0	292	41	17	13	27	1.87
9784844--9784871	10	2.8	10	100	0	56	60	17	0	21	1.36
9789485--9789615	67	2.0	67	83	1	165	36	20	16	25	1.94
9795094--9795122	14	2.0	15	93	6	51	48	6	24	20	1.74
9797708--9797751	15	2.9	14	78	18	52	77	2	9	11	1.08
9798463--9798507	22	2.0	22	83	8	56	42	4	4	48	1.43
9803499--9803539	21	2.0	21	85	0	55	31	9	4	53	1.55
9806863--9806926	29	2.2	29	91	0	101	53	14	10	21	1.71
9809551--9809592	15	2.9	15	82	10	52	52	0	0	47	1.00
9809657--9809729	16	4.6	16	73	19	55	53	1	0	45	1.09
9809682--9809729	18	2.8	18	74	22	50	56	0	0	43	0.99
9809542--9809957	120	3.5	120	95	0	735	49	5	2	43	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9809939--9810197	47	5.7	46	70	19	193	47	3	3	46	1.33
9809973--9810265	91	3.2	91	97	0	541	46	3	3	46	1.36
9810020--9810253	47	5.1	46	71	17	209	48	3	2	45	1.32
9810239--9810271	17	2.0	17	88	5	50	39	6	9	45	1.61
9810039--9810267	44	5.1	44	69	20	177	46	3	3	45	1.38
9810574--9810604	16	1.9	16	100	0	62	25	6	9	58	1.54
9810617--9810736	64	1.9	63	98	1	231	30	7	10	52	1.62
9810805--9810854	26	1.9	26	88	8	75	44	0	0	56	0.99
9812818--9813020	41	5.0	41	87	4	212	19	18	28	33	1.95
9819853--9819928	38	2.0	38	100	0	152	39	0	13	47	1.42
9828025--9828247	25	9.1	25	70	14	142	22	15	26	34	1.94
9828065--9828244	24	7.4	24	70	13	125	22	15	26	35	1.94
9828039--9828247	49	4.3	49	83	3	269	22	15	27	35	1.94
9829528--9829567	16	2.6	15	92	7	71	62	10	12	15	1.54
9829609--9829642	13	2.7	13	95	4	61	41	0	0	58	0.98
9829831--9829897	32	2.0	35	83	13	88	44	1	5	47	1.36
9833564--9833682	22	5.4	22	72	7	98	38	21	22	17	1.93
9833564--9833682	44	2.7	44	82	0	139	38	21	22	17	1.93
9837269--9837330	31	1.9	32	93	6	108	29	16	8	46	1.75
9837476--9837505	14	2.2	13	94	5	51	46	0	6	46	1.29
9839124--9839168	18	2.4	18	81	3	54	53	4	0	42	1.21
9843266--9843332	34	1.9	36	82	11	86	26	4	0	68	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9843287--9843332	19	2.4	19	85	7	67	23	4	0	71	1.03
9843290--9843370	20	4.2	19	73	14	67	25	2	3	67	1.19
9845834--9845920	18	4.7	19	70	22	62	57	2	0	40	1.11
9845868--9845893	11	2.4	11	100	0	52	53	7	0	38	1.30
9845841--9845920	9	8.9	9	73	21	53	56	2	0	41	1.13
9848771--9848795	13	1.9	13	100	0	50	44	0	8	48	1.32
9856899--9856992	48	1.9	49	87	6	138	20	13	23	42	1.88
9862492--9862537	24	1.9	24	86	0	65	39	2	0	58	1.10
9871391--9871430	19	2.1	19	100	0	80	20	0	35	45	1.51
9876090--9876207	57	2.1	57	87	4	166	25	18	6	49	1.72
9882361--9882415	19	2.8	20	70	25	55	60	0	1	38	1.08
9886189--9886264	38	2.0	39	87	5	111	39	1	3	55	1.27
9889570--9889633	32	2.0	32	100	0	128	21	37	6	34	1.79
9893466--9893506	21	2.0	21	81	18	50	31	19	26	21	1.97
9897753--9897798	24	1.9	24	90	0	74	13	43	4	39	1.63
9897821--9897850	14	2.1	14	93	0	51	10	43	10	36	1.72
9898008--9898033	13	2.0	13	100	0	52	23	7	15	53	1.67
9898289--9898346	27	2.1	27	100	0	116	34	31	10	24	1.89
9899687--9899729	17	2.7	15	83	13	59	23	11	9	55	1.64
9900640--9900670	15	2.1	15	100	0	62	38	35	0	25	1.56
9900794--9900855	18	3.2	18	66	16	52	56	3	3	37	1.32
9900791--9900864	20	3.7	20	72	13	80	58	2	4	35	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9900977--9901014	14	2.7	14	87	0	58	39	18	7	34	1.80
9910989--9911043	23	2.3	23	85	14	85	41	0	9	49	1.34
9910998--9911039	13	3.5	13	75	18	54	38	0	11	50	1.40
9911784--9911979	97	2.0	98	92	1	331	36	24	10	28	1.88
9913100--9913213	56	2.0	57	82	3	140	14	25	2	57	1.49
9913100--9913214	58	2.0	57	83	5	142	13	25	2	58	1.49
9913759--9914444	44	15.6	44	73	13	407	25	23	22	29	1.99
9913891--9914365	45	10.7	45	74	12	292	25	23	21	30	1.99
9913850--9914142	134	2.2	134	94	0	514	23	23	22	30	1.99
9913985--9914447	218	2.1	218	92	0	773	26	22	21	29	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196