genome.fa.s25.2.7.7.80.10.50.1000.150.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D12
Parameters: 2 7 7 80 10 50 1000
Length:  58873029

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   

This is table  150  of  196  ( 23409 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44417647--44417710	3	21.3	3	100	0	128	67	0	32	0	0.91
44417788--44417845	3	19.3	3	96	0	107	0	31	0	68	0.89
44418368--44418435	3	23.3	3	77	5	59	2	29	0	67	1.05
44419761--44419803	18	2.4	16	82	17	50	41	13	0	44	1.44
44425253--44425311	31	1.9	31	89	0	91	49	3	1	45	1.28
44429594--44429626	17	2.0	17	88	5	50	51	6	0	42	1.26
44430686--44430723	18	2.1	18	100	0	76	5	63	31	0	1.17
44431053--44431094	16	2.6	16	92	0	66	42	7	2	47	1.43
44431068--44431128	22	2.8	22	84	0	77	47	1	1	49	1.21
44445640--44445668	3	9.7	3	100	0	58	68	0	31	0	0.89
44454300--44454331	13	2.5	13	94	0	55	56	0	3	40	1.15
44454773--44454820	25	2.0	24	84	12	62	33	2	0	64	1.05
44455004--44455049	16	2.8	16	80	3	56	23	4	4	67	1.27
44455092--44455122	16	1.9	16	93	0	53	45	3	0	51	1.17
44462572--44462690	51	2.4	51	88	1	177	56	5	1	36	1.31
44466809--44466865	30	1.9	30	88	0	87	42	3	3	50	1.36
44470126--44470165	21	1.9	21	89	0	62	37	25	10	27	1.88
44470322--44470377	22	2.5	22	82	5	60	19	1	33	44	1.61
44470619--44470768	74	2.0	74	100	0	300	38	2	8	50	1.46
44472227--44472276	17	2.9	17	81	0	64	22	20	8	50	1.74
44474311--44474378	30	2.3	30	84	5	84	47	5	19	27	1.72
44476811--44477117	46	6.7	46	95	0	499	37	15	24	22	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44479521--44479569	17	2.9	17	90	0	80	28	18	6	46	1.72
44480076--44480114	18	2.2	19	86	9	55	66	12	0	20	1.24
44485900--44485959	30	2.0	30	83	3	77	43	5	21	30	1.74
44486295--44486537	50	4.9	50	88	3	364	25	21	31	21	1.98
44491054--44491100	26	2.0	24	84	16	62	44	14	25	14	1.84
44492592--44492624	5	6.6	5	89	10	50	21	0	0	78	0.75
44496905--44496947	18	2.4	18	84	7	52	39	2	4	53	1.34
44496915--44497004	44	2.0	44	91	0	144	37	7	3	51	1.48
44504551--44504575	13	1.9	13	100	0	50	24	44	0	32	1.54
44506768--44506800	14	2.5	13	90	9	50	75	0	24	0	0.80
44510933--44510965	16	2.0	17	88	5	50	33	30	21	15	1.94
44510983--44511048	18	3.7	18	79	0	69	30	19	24	25	1.98
44511960--44511994	13	2.7	13	95	0	61	51	0	2	45	1.16
44513105--44513138	16	2.1	16	88	0	50	41	2	20	35	1.68
44524022--44524634	94	6.6	93	78	5	562	33	18	20	28	1.96
44524022--44524619	188	3.2	187	79	4	647	32	18	20	28	1.96
44524113--44524672	44	12.2	44	70	13	279	32	18	20	28	1.96
44524489--44524755	88	3.0	87	84	8	306	29	19	22	28	1.98
44524684--44524837	82	1.9	81	89	1	236	31	18	23	27	1.97
44524764--44525163	94	4.2	93	82	2	415	34	18	18	28	1.95
44524764--44525165	188	2.1	188	85	2	531	34	18	18	28	1.95
44525690--44525753	5	12.8	5	73	12	51	75	1	18	4	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44525806--44525843	16	2.5	15	84	16	51	81	2	7	7	0.96
44526240--44526285	12	3.7	12	77	11	56	36	0	6	56	1.25
44526693--44526734	12	3.2	12	84	15	57	21	2	2	73	1.06
44529613--44529736	30	4.1	30	93	1	203	25	24	6	43	1.78
44529623--44529730	15	7.2	15	67	12	78	25	22	7	44	1.79
44534305--44534428	30	4.1	30	93	1	203	25	24	6	43	1.78
44534315--44534422	15	7.2	15	67	12	78	25	22	7	44	1.79
44538199--44538223	13	1.9	13	100	0	50	44	0	8	48	1.32
44542350--44542424	21	3.5	21	73	8	71	60	0	2	37	1.11
44542367--44542475	12	10.3	11	70	20	72	58	0	3	37	1.16
44542386--44542451	17	4.0	17	74	7	73	62	0	1	36	1.05
44542376--44542464	32	2.9	31	88	6	128	60	0	3	35	1.13
44542355--44542492	41	3.4	40	80	9	147	63	0	2	34	1.10
44542349--44542503	73	2.1	73	82	10	188	60	0	2	36	1.10
44543285--44543336	24	2.2	24	82	0	59	51	5	5	36	1.50
44545257--44545308	24	2.2	24	89	0	77	53	7	3	34	1.48
44548271--44548335	31	2.1	31	88	0	94	58	1	3	36	1.23
44549282--44549404	12	9.8	12	71	11	77	26	14	8	50	1.71
44549282--44549400	25	4.8	24	74	13	89	26	14	8	51	1.70
44562313--44562624	158	2.0	158	91	2	511	21	25	22	31	1.98
44569587--44569625	16	2.5	16	91	4	62	25	0	0	74	0.82
44569831--44569881	23	2.1	23	82	7	57	25	5	7	60	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44570058--44570090	15	2.2	15	94	0	57	24	0	12	63	1.28
44570364--44570560	98	2.0	98	96	0	367	28	10	23	37	1.87
44571990--44572111	44	2.8	44	81	3	131	29	20	20	29	1.98
44571992--44572664	217	3.1	216	88	3	940	28	20	23	27	1.99
44572326--44572610	89	3.3	84	77	11	258	28	21	23	26	1.99
44572114--44572610	84	5.7	85	71	13	259	27	20	24	27	1.99
44572117--44572611	44	11.4	42	73	13	312	27	20	24	27	1.99
44574263--44574323	26	2.2	27	80	11	70	27	4	6	60	1.42
44574496--44574528	15	2.2	15	94	0	57	24	0	12	63	1.28
44574802--44574998	98	2.0	98	92	0	331	29	9	23	37	1.87
44575161--44575222	21	3.0	21	74	9	74	43	16	4	35	1.69
44577501--44577557	4	13.5	4	83	10	53	21	0	8	70	1.14
44577508--44577556	8	5.7	9	81	13	59	18	0	8	73	1.07
44579572--44579708	21	6.5	21	68	0	94	43	16	21	18	1.87
44579572--44579726	42	3.7	42	76	0	148	43	15	23	17	1.87
44584785--44584817	10	3.2	10	95	4	57	18	9	0	72	1.10
44585501--44585530	13	2.3	13	100	0	60	40	26	10	23	1.86
44587436--44587476	21	2.0	21	90	0	64	24	21	7	46	1.77
44590922--44591030	25	4.4	24	77	3	110	27	23	27	21	1.99
44590922--44591030	50	2.2	49	83	4	130	27	23	27	21	1.99
44591024--44591091	25	2.8	24	78	10	66	38	19	26	16	1.92
44603117--44603176	30	2.0	30	83	6	77	51	11	6	30	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44605449--44605473	11	2.3	11	100	0	50	56	8	0	36	1.29
44606214--44606257	16	2.8	17	80	13	58	4	15	9	70	1.30
44613944--44613992	8	6.0	8	77	13	55	46	0	0	53	1.00
44613921--44613993	19	4.1	19	71	16	66	39	2	0	57	1.13
44615131--44615457	48	7.0	48	81	4	319	32	18	21	27	1.96
44615500--44615846	34	10.2	34	70	12	187	39	16	14	30	1.88
44615507--44615743	68	3.5	68	79	2	228	39	16	15	29	1.89
44615651--44615816	68	2.4	68	84	7	219	40	16	14	28	1.88
44615565--44615759	102	1.9	102	85	6	270	38	15	14	30	1.88
44615568--44615812	102	2.4	102	81	4	262	38	15	15	29	1.89
44615660--44615846	68	2.8	68	81	4	216	39	16	13	30	1.87
44616277--44616301	13	1.9	13	100	0	50	8	36	32	24	1.84
44617916--44617968	26	2.1	26	82	10	65	28	1	3	66	1.20
44625859--44625915	25	2.3	25	87	6	80	36	19	22	21	1.95
44625876--44625947	25	2.9	25	83	8	76	41	19	23	15	1.89
44641878--44641934	20	2.8	22	85	15	79	49	5	0	45	1.24
44643212--44643301	46	2.1	41	83	10	108	21	5	12	61	1.51
44644207--44644236	13	2.4	12	89	10	51	30	3	23	43	1.70
44645511--44645630	37	3.2	37	68	17	102	36	5	20	38	1.74
44645495--44645657	76	2.1	77	83	6	206	36	6	19	38	1.76
44645852--44645951	41	2.4	41	94	0	173	28	21	25	26	1.99
44650569--44650809	50	4.8	50	84	1	288	27	22	28	21	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44651289--44651747	23	19.6	23	71	10	313	41	15	15	27	1.87
44651289--44651747	47	9.8	47	73	6	290	41	15	15	27	1.87
44651257--44651530	142	1.9	143	88	2	417	42	16	14	26	1.86
44651287--44651530	70	3.5	70	86	4	346	43	14	15	26	1.86
44651504--44651762	70	3.7	70	87	4	378	41	15	15	27	1.87
44651421--44651632	117	1.8	116	89	1	334	42	14	15	27	1.85
44651430--44651724	117	2.5	117	80	5	303	41	15	16	26	1.88
44652442--44652562	28	4.5	28	83	10	144	32	25	11	30	1.91
44652442--44652562	51	2.3	54	84	7	149	32	25	11	30	1.91
44661527--44661705	68	2.9	59	85	13	268	45	9	4	40	1.57

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196