genome.fa.s25.2.7.7.80.10.50.1000.139.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D12
Parameters: 2 7 7 80 10 50 1000
Length:  58873029

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   

This is table  139  of  196  ( 23409 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41195371--41195436	25	2.7	25	81	6	73	36	15	25	22	1.93
41202307--41202355	25	2.0	25	87	0	71	34	18	24	22	1.96
41204642--41204695	28	1.9	28	84	0	72	42	12	12	31	1.81
41208675--41208699	13	1.9	13	100	0	50	20	0	8	72	1.10
41208676--41208719	21	2.1	21	83	8	54	22	2	4	70	1.17
41212004--41212098	47	2.0	47	100	0	190	51	16	12	18	1.76
41228005--41228029	12	2.1	12	100	0	50	68	0	8	24	1.16
41229999--41230404	23	17.4	23	74	11	263	40	18	14	27	1.89
41229999--41230404	93	4.3	93	94	1	704	40	18	14	27	1.89
41230014--41230393	188	2.0	188	96	0	706	40	18	13	27	1.88
41231094--41231189	28	3.4	28	92	0	156	30	25	12	32	1.92
41232770--41232821	21	2.5	20	79	14	61	38	0	17	44	1.49
41233379--41233434	25	2.3	25	87	3	78	19	23	21	35	1.96
41233429--41233484	24	2.3	25	84	3	78	17	23	25	33	1.96
41239619--41239727	41	2.7	41	85	2	157	23	29	18	28	1.98
41239619--41239776	82	1.9	82	80	12	182	25	28	17	28	1.97
41251083--41251150	26	2.7	26	79	2	75	16	25	20	38	1.92
41251083--41251220	26	5.5	25	67	15	63	18	24	21	35	1.95
41253957--41254035	26	3.0	26	85	3	97	45	20	2	31	1.64
41254780--41254806	4	6.8	4	100	0	54	77	0	0	22	0.76
41260046--41260180	25	5.5	25	71	7	125	42	15	16	25	1.87
41260021--41260199	48	3.7	48	93	1	297	41	15	16	26	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41260071--41260199	23	5.4	23	69	10	107	40	16	17	26	1.90
41267405--41267605	48	4.2	48	90	2	298	40	15	17	26	1.90
41267452--41267586	25	5.5	25	70	7	116	41	14	16	27	1.87
41267477--41267605	23	5.4	23	67	10	98	39	15	17	27	1.90
41268209--41268362	43	3.7	43	73	14	133	25	27	16	29	1.97
41273545--41273598	20	2.5	22	85	8	67	3	18	3	74	1.12
41274830--41274894	22	2.8	24	77	11	73	32	13	15	38	1.87
41275860--41275898	15	2.6	15	87	0	51	38	0	7	53	1.30
41276465--41276505	16	2.5	17	81	14	50	39	0	21	39	1.54
41281163--41281219	28	2.0	28	100	0	114	22	21	14	42	1.88
41283783--41283829	19	2.6	19	83	12	55	36	0	4	59	1.17
41293600--41293631	6	5.3	6	100	0	64	0	15	0	84	0.63
41297345--41297388	19	2.2	20	84	4	63	34	4	4	56	1.40
41298589--41298655	23	2.9	23	88	4	91	41	28	16	13	1.86
41304191--41304302	56	2.0	56	100	0	224	30	3	23	42	1.71
41307734--41307761	8	3.5	8	100	0	56	42	0	0	57	0.99
41307756--41307804	14	3.6	14	78	13	57	34	2	0	63	1.06
41307750--41307804	27	2.1	27	86	6	78	34	1	0	63	1.05
41307750--41307793	12	3.6	12	78	6	52	34	2	0	63	1.07
41307750--41307788	11	3.4	11	83	13	51	30	2	0	66	1.05
41307750--41307805	26	2.2	27	84	9	73	35	1	0	62	1.06
41308926--41308960	16	2.2	16	89	0	52	54	0	2	42	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41315739--41315809	21	3.1	21	78	21	88	30	0	12	56	1.37
41315738--41316016	48	5.4	47	67	28	144	31	0	14	53	1.44
41315760--41316016	27	9.7	27	71	21	181	31	0	14	53	1.44
41315952--41316042	8	10.4	8	69	17	56	35	1	15	48	1.52
41315668--41316083	183	2.3	183	97	1	784	31	0	14	53	1.45
41315921--41316064	75	1.9	73	84	8	191	31	0	15	52	1.48
41316031--41316083	22	2.4	22	81	6	63	32	0	9	58	1.30
41316058--41316179	60	2.0	60	87	3	174	31	0	13	54	1.46
41316212--41316293	38	2.2	38	97	0	155	54	3	2	39	1.31
41316330--41316371	16	2.7	15	85	7	57	38	2	2	57	1.25
41316501--41316685	21	8.2	21	74	20	119	53	14	0	31	1.45
41316528--41316617	8	10.4	8	69	19	56	47	15	1	35	1.53
41316506--41316676	71	2.5	66	79	14	202	52	14	0	33	1.46
41316554--41316759	19	10.7	19	71	20	128	53	12	0	33	1.39
41316554--41316636	27	3.1	27	92	1	141	51	12	0	36	1.39
41316601--41316686	40	2.2	38	91	4	136	54	11	0	33	1.37
41317484--41317529	20	2.3	20	88	0	65	8	15	15	60	1.57
41317742--41317838	19	4.7	21	77	15	96	35	10	17	37	1.84
41317741--41317812	19	3.7	19	87	7	108	34	12	16	36	1.87
41321605--41321634	12	2.5	12	94	0	51	43	0	3	53	1.17
41322557--41322714	43	3.7	43	86	6	205	20	19	27	32	1.97
41323783--41323826	24	1.9	24	90	9	74	36	0	2	61	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41323923--41323950	9	3.1	9	100	0	56	57	10	0	32	1.33
41323893--41324102	68	3.1	68	97	1	388	45	8	4	40	1.56
41323991--41324018	9	3.1	9	100	0	56	57	10	0	32	1.33
41324091--41324132	16	2.6	16	92	0	66	42	7	2	47	1.43
41324106--41324159	23	2.4	23	84	3	65	42	1	1	53	1.22
41325597--41325717	63	1.9	63	84	0	161	39	14	16	29	1.88
41327440--41327556	51	2.3	51	95	0	207	29	23	12	34	1.92
41334438--41334480	20	2.1	20	86	4	59	48	6	18	25	1.73
41334501--41334558	20	2.9	20	80	10	64	36	1	18	43	1.61
41334511--41335166	40	16.3	39	68	15	198	39	5	14	40	1.70
41334680--41334735	20	2.8	20	86	0	76	42	7	10	39	1.67
41334650--41334744	20	4.8	20	77	0	73	40	5	12	42	1.65
41334888--41335023	59	2.3	59	83	3	157	38	5	11	44	1.64
41334844--41335170	20	16.4	20	70	5	142	37	7	14	40	1.73
41335234--41335335	20	5.1	20	75	9	75	37	5	18	38	1.75
41335228--41335335	40	2.7	40	74	5	101	37	5	17	38	1.73
41335414--41335545	40	3.3	40	81	2	113	38	4	15	40	1.68
41335371--41335550	60	3.0	60	78	6	186	40	5	16	38	1.70
41335392--41335552	20	8.1	20	75	4	92	39	4	15	40	1.67
41341859--41341897	19	2.1	19	85	9	53	43	0	12	43	1.42
41341978--41342315	46	7.5	46	94	1	569	33	15	22	28	1.95
41341978--41342315	91	3.7	91	94	1	583	33	15	22	28	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41344941--41345156	91	2.3	92	83	3	254	29	14	24	31	1.94
41345245--41345332	38	2.3	39	82	2	97	31	13	20	34	1.92
41348364--41348412	24	2.0	24	100	0	98	46	16	4	32	1.65
41353808--41353871	31	2.1	30	85	8	85	17	7	10	64	1.48
41362121--41362158	17	2.2	18	86	13	53	18	7	13	60	1.56
41365637--41365695	29	2.0	30	86	3	84	57	6	1	33	1.35
41368394--41368442	24	2.0	24	88	0	71	26	6	32	34	1.81
41373439--41373694	124	2.1	125	86	3	356	29	16	23	31	1.96
41374749--41374788	17	2.4	17	95	0	71	17	27	30	25	1.97
41375517--41375558	22	1.9	22	90	0	66	33	0	33	33	1.58
41375530--41375588	30	2.0	30	93	0	100	33	0	35	30	1.58
41375508--41375610	52	2.0	51	85	9	138	34	0	33	32	1.58
41375560--41375627	22	3.1	21	85	8	91	39	0	29	30	1.57
41379550--41379574	7	3.6	7	100	0	50	32	40	12	16	1.84
41385815--41385847	16	2.0	17	94	5	59	84	0	15	0	0.61
41388003--41388034	15	2.0	17	88	11	50	43	3	0	53	1.16
41392181--41392217	9	4.1	9	92	0	65	29	10	13	45	1.77
41392272--41392302	9	3.4	9	90	0	53	38	22	12	25	1.90
41393963--41394107	41	3.5	41	90	1	229	28	18	28	24	1.98
41401472--41401575	41	2.5	41	93	3	174	26	20	30	22	1.98
41405897--41406022	59	2.1	60	82	8	150	36	5	14	43	1.69
41408050--41408082	16	2.0	17	94	5	59	0	15	0	84	0.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41413872--41413945	32	2.3	32	95	0	130	39	10	25	24	1.88
41416161--41416540	196	1.9	197	82	5	475	33	23	11	32	1.90
41420277--41420304	7	4.0	7	100	0	56	28	0	0	71	0.86
41427462--41427575	56	2.0	56	100	0	228	30	11	15	42	1.83
41429436--41429531	9	10.4	9	78	12	106	35	31	8	25	1.85
41429492--41429529	20	1.9	20	94	0	67	39	28	10	21	1.86
41430266--41430305	16	2.5	16	95	0	71	25	5	35	35	1.78
41437848--41437886	20	2.0	20	84	0	51	17	5	2	74	1.12
41440114--41440181	29	2.3	29	87	5	91	42	19	14	23	1.88
41439994--41440275	91	3.1	91	80	5	266	40	15	14	29	1.87

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196