genome.fa.s25.2.7.7.80.10.50.1000.144.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D12
Parameters: 2 7 7 80 10 50 1000
Length:  58873029

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   

This is table  144  of  196  ( 23409 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42611330--42611355	11	2.4	11	100	0	52	23	0	15	61	1.33
42614684--42614722	20	2.0	20	94	0	69	48	0	2	48	1.15
42614805--42614881	14	5.0	15	72	20	61	44	15	7	32	1.75
42614821--42614860	20	2.0	20	90	0	62	50	12	10	27	1.72
42614809--42614875	34	1.9	35	93	3	118	47	13	7	31	1.70
42614844--42614883	14	2.9	14	88	0	62	45	17	5	32	1.70
42614901--42614996	28	3.4	28	85	0	120	31	12	25	31	1.92
42615721--42616272	23	23.6	23	71	12	367	26	15	16	42	1.87
42615706--42616274	70	8.1	70	85	5	763	26	14	15	42	1.86
42615719--42616274	211	2.6	211	89	2	843	26	14	16	42	1.87
42617436--42617494	18	3.3	18	80	4	57	44	8	1	45	1.44
42617454--42617494	18	2.3	19	83	12	59	43	9	0	46	1.36
42617650--42617703	25	2.1	26	82	3	65	48	1	1	48	1.23
42618766--42618865	35	2.8	35	82	8	105	7	9	8	76	1.17
42618791--42618849	26	2.4	25	86	8	84	3	11	6	77	1.07
42619766--42619822	25	2.3	25	81	0	60	40	14	5	40	1.68
42620061--42620152	23	3.9	23	80	15	107	30	21	26	21	1.99
42621136--42621202	30	2.2	30	97	0	125	32	19	10	37	1.86
42627112--42627168	25	2.3	25	81	0	60	40	14	5	40	1.68
42627406--42627497	23	3.9	23	80	15	107	30	21	26	21	1.99
42628992--42629030	19	2.1	19	100	0	78	25	0	15	58	1.37
42634703--42635087	211	1.8	210	96	0	707	33	18	13	34	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42638160--42638199	16	2.5	16	91	0	62	47	2	7	42	1.45
42638188--42638386	66	3.1	66	92	5	313	40	5	8	45	1.58
42638453--42638495	23	1.9	22	95	4	77	62	0	0	37	0.95
42657389--42657439	24	2.2	22	83	16	59	52	11	13	21	1.72
42665540--42665578	3	13.0	3	94	0	69	69	0	0	30	0.89
42666742--42666797	19	2.9	20	72	20	64	1	8	42	46	1.45
42672049--42672165	50	2.3	50	86	5	157	21	29	17	30	1.96
42672049--42672174	25	5.0	25	70	10	96	21	29	17	31	1.96
42672049--42672190	50	2.8	50	82	4	126	21	28	19	30	1.97
42676535--42676567	12	2.7	13	86	13	52	9	9	48	33	1.66
42682285--42682323	15	2.6	15	95	0	69	56	5	7	30	1.49
42684907--42684952	6	7.7	6	100	0	92	50	34	15	0	1.44
42685046--42685073	2	14.0	2	100	0	56	0	50	0	50	1.00
42690169--42690197	14	2.1	14	100	0	58	41	6	20	31	1.79
42701798--42702040	90	2.7	90	83	1	326	30	23	15	31	1.95
42704522--42704578	27	2.1	27	84	9	73	31	1	8	57	1.39
42718134--42718163	13	2.2	14	94	5	53	36	0	0	63	0.95
42721345--42721722	190	2.0	190	92	0	621	32	20	14	32	1.92
42724376--42724429	26	2.1	26	100	0	108	24	7	11	57	1.58
42736544--42736589	18	2.6	19	83	10	53	32	0	0	67	0.91
42736565--42736599	17	2.1	17	88	0	52	22	0	0	77	0.78
42744395--42744444	21	2.5	21	80	6	59	20	22	14	44	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42748550--42748622	33	2.2	33	92	0	119	36	6	21	34	1.81
42755904--42755940	18	2.1	18	90	10	58	56	0	8	35	1.29
42769719--42769765	20	2.3	21	74	3	51	48	6	2	42	1.40
42769760--42769800	15	2.6	16	81	11	50	46	0	0	53	1.00
42769774--42769825	23	2.3	23	93	0	86	40	0	0	59	0.97
42770484--42770539	27	2.1	27	83	12	71	21	12	5	60	1.51
42772212--42772270	26	2.3	26	82	5	75	57	5	10	27	1.52
42772517--42772549	14	2.3	15	94	5	59	30	0	33	36	1.58
42772683--42772736	14	3.9	14	72	20	51	18	0	44	37	1.50
42772775--42772813	7	5.6	7	81	0	51	20	0	48	30	1.50
42772802--42772841	21	1.9	21	85	10	55	27	0	37	35	1.57
42774954--42775012	30	2.0	30	87	9	86	18	37	0	44	1.50
42775118--42775175	30	1.9	31	82	3	73	18	29	0	51	1.47
42778795--42778881	43	2.0	44	84	4	115	26	16	21	35	1.94
42780891--42780919	10	2.7	11	94	5	51	41	0	20	37	1.53
42781229--42781286	25	2.4	24	77	5	62	15	31	17	36	1.91
42781371--42781474	25	4.1	24	75	20	79	22	22	19	36	1.95
42781386--42781474	27	3.5	25	79	8	99	22	21	20	35	1.96
42787765--42787826	3	20.7	3	100	0	124	33	0	0	66	0.92
42788213--42788285	32	2.3	32	88	9	107	46	5	16	31	1.70
42790170--42790231	31	2.0	31	100	0	124	25	19	6	48	1.72
42794505--42794533	6	4.8	6	100	0	58	51	0	34	13	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42795948--42796107	10	15.9	10	68	18	64	58	0	3	38	1.14
42795979--42796055	29	2.7	28	90	8	111	62	0	2	35	1.09
42795962--42796115	40	4.1	41	72	20	154	62	0	3	34	1.12
42795962--42796116	41	3.9	39	84	8	177	61	0	3	34	1.12
42795945--42796066	11	11.9	11	67	23	61	56	0	2	40	1.12
42796345--42796380	9	3.9	9	96	3	63	33	0	8	58	1.28
42796345--42796380	19	1.9	18	94	5	63	33	0	8	58	1.28
42796444--42796499	20	2.7	21	75	10	53	23	3	7	66	1.33
42797574--42797623	23	2.1	24	85	3	66	74	18	0	8	1.06
42798673--42798712	19	2.0	20	85	4	55	40	0	2	57	1.12
42800342--42800437	31	3.1	31	95	3	174	45	13	9	31	1.75
42801175--42801270	31	3.1	31	95	3	174	45	13	9	31	1.75
42820448--42820484	3	12.3	3	100	0	74	0	32	0	67	0.91
42826122--42826278	43	3.7	41	76	13	158	23	18	28	29	1.98
42826439--42826470	16	1.9	17	93	6	57	40	0	21	37	1.54
42833727--42833885	43	3.8	41	80	8	169	23	18	27	30	1.98
42833730--42833885	84	1.9	84	84	10	212	24	18	27	29	1.98
42838674--42838753	42	1.9	42	86	0	115	42	18	18	20	1.89
42838692--42838758	21	3.2	21	72	8	64	44	17	20	16	1.86
42846340--42846453	59	1.9	59	82	3	140	42	16	9	31	1.81
42847178--42847218	21	2.0	21	90	0	64	14	26	0	58	1.37
42847763--42847803	21	2.0	21	90	0	64	53	14	4	26	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42848753--42848778	11	2.4	11	100	0	52	38	7	0	53	1.30
42848796--42848878	11	7.9	11	72	17	70	43	1	0	55	1.07
42848794--42848872	40	1.9	41	89	5	124	41	1	0	56	1.07
42848844--42848884	22	1.9	21	95	5	73	43	0	0	56	0.99
42849386--42849427	20	2.1	20	86	8	59	38	0	4	57	1.20
42849781--42849805	12	2.1	12	100	0	50	52	16	0	32	1.44
42850378--42850459	3	27.3	3	84	9	105	31	2	1	64	1.14
42851099--42851610	109	4.7	109	93	0	803	30	14	19	35	1.92
42855736--42855912	42	4.2	42	86	0	239	28	20	20	31	1.97
42856875--42856914	4	10.0	4	100	0	80	50	25	0	25	1.50
42862296--42862326	6	5.2	6	96	0	53	35	51	0	12	1.40
42862746--42862789	14	3.2	13	84	12	52	29	4	2	63	1.26
42863053--42863102	10	4.9	10	78	11	57	42	4	0	54	1.19
42863037--42863101	30	2.1	31	83	8	80	40	6	0	53	1.26
42871055--42871088	17	2.1	17	94	5	61	20	5	26	47	1.73
42878353--42878385	16	2.1	16	94	0	57	39	6	33	21	1.78
42878713--42878759	16	3.0	16	81	12	62	53	0	0	46	1.00
42878833--42878879	16	3.0	16	78	12	53	51	2	0	46	1.13
42878597--42879133	120	4.5	120	94	1	891	50	5	2	41	1.39
42878978--42879012	18	2.0	17	88	5	52	54	0	0	45	0.99
42879004--42879033	16	1.9	15	93	6	51	46	10	3	40	1.54
42879115--42879373	47	5.7	46	69	19	184	47	3	3	45	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42879072--42879394	91	3.4	95	80	14	343	48	2	3	45	1.32
42879149--42879397	91	2.7	91	95	0	444	47	2	3	46	1.33
42879362--42879400	17	2.5	15	84	12	51	58	0	0	41	0.98
42884080--42884113	18	1.9	18	88	5	52	55	17	5	20	1.62
42889817--42889850	17	1.9	18	88	5	52	44	0	8	47	1.34
42890423--42890819	150	2.6	150	88	2	582	30	9	7	52	1.59
42891911--42892486	153	3.8	152	86	4	752	53	7	9	29	1.62
42893264--42893308	17	2.6	17	96	0	81	48	2	0	48	1.13
42899166--42899199	14	2.4	14	90	0	50	38	11	0	50	1.39
42912510--42912542	3	11.0	3	93	0	57	69	0	30	0	0.88

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196