genome.fa.s25.2.7.7.80.10.50.1000.148.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D12
Parameters: 2 7 7 80 10 50 1000
Length:  58873029

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   

This is table  148  of  196  ( 23409 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43803086--43803148	21	3.1	21	72	19	62	60	1	4	33	1.27
43803100--43803172	30	2.5	29	81	16	80	58	1	5	34	1.29
43803140--43803183	18	2.4	19	88	3	63	59	2	6	31	1.36
43804259--43804296	20	1.9	20	89	10	60	28	0	21	50	1.49
43805198--43805243	24	1.9	24	86	0	65	28	15	17	39	1.90
43819344--43819426	32	2.6	32	92	1	130	14	40	25	19	1.89
43830796--43830823	5	5.6	5	100	0	56	39	21	17	21	1.93
43831307--43831335	9	3.2	9	100	0	58	68	0	0	31	0.89
43831865--43831901	9	4.1	9	92	0	65	29	10	13	45	1.77
43831954--43831984	9	3.4	9	90	0	53	38	22	12	25	1.90
43832515--43832554	20	2.0	20	90	0	62	22	17	27	32	1.96
43837163--43837204	18	2.4	17	84	11	50	30	23	16	28	1.96
43845577--43845611	12	2.9	12	82	0	52	22	51	20	5	1.68
43858982--43859417	44	9.9	44	81	1	451	33	15	20	30	1.94
43861018--43861061	4	11.0	4	86	13	56	25	0	0	75	0.81
43861019--43861060	16	2.6	16	89	10	68	23	0	0	76	0.79
43861017--43861060	21	2.2	20	88	12	63	22	0	0	77	0.77
43861122--43861162	3	13.7	3	84	0	55	29	4	2	63	1.28
43863047--43863147	41	2.5	40	88	1	139	30	16	20	31	1.95
43865803--43865861	21	3.0	20	80	9	77	30	25	15	28	1.96
43866700--43866724	13	1.9	13	100	0	50	84	0	0	16	0.63
43866657--43866734	35	2.2	34	82	6	93	62	0	2	34	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43869106--43871884	557	5.0	557	98	0	5418	24	29	8	37	1.85
43872547--43872580	17	2.1	17	88	5	52	26	5	20	47	1.73
43875072--43875156	27	3.2	26	76	14	84	70	2	1	25	1.06
43875073--43875158	9	9.9	8	71	21	50	69	2	1	26	1.07
43875070--43875151	17	4.5	18	75	16	62	67	2	1	29	1.11
43875551--43875656	48	2.2	48	86	0	140	21	9	39	29	1.85
43882451--43882480	12	2.5	12	94	0	51	80	6	3	10	1.01
43882910--43882936	6	4.5	6	100	0	54	33	48	0	18	1.49
43885320--43885782	126	3.7	126	83	2	572	31	16	22	29	1.96
43885320--43885782	252	1.8	252	85	2	662	31	16	22	29	1.96
43891135--43891252	59	2.0	59	96	0	218	25	26	22	25	2.00
43895583--43895624	21	2.0	21	90	0	66	45	0	14	40	1.45
43903089--43903117	14	2.1	14	100	0	58	34	0	13	51	1.42
43906582--43906616	15	2.3	15	90	0	52	34	0	8	57	1.29
43907744--43907814	17	3.9	17	77	14	70	59	1	2	36	1.21
43907764--43907817	20	2.8	20	80	2	65	61	1	1	35	1.18
43907787--43907916	10	13.7	10	70	13	53	61	1	0	36	1.11
43907747--43907841	9	10.4	9	73	17	72	62	1	3	33	1.18
43913192--43913406	21	10.3	21	76	3	184	14	21	16	46	1.83
43913191--43913375	42	4.4	42	82	0	208	16	21	16	45	1.84
43913192--43913376	84	2.2	83	84	5	230	16	21	16	45	1.84
43913856--43913915	25	2.3	26	78	16	63	21	10	26	41	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43915778--43915820	21	2.0	21	86	0	59	39	16	0	44	1.48
43926163--43926348	77	2.4	77	82	1	212	46	9	10	33	1.69
43926163--43926372	77	2.7	76	80	3	206	46	9	9	35	1.68
43944762--43944788	2	13.5	2	100	0	54	0	51	0	48	1.00
43949951--43949981	10	3.2	10	90	9	55	38	12	9	38	1.77
43956800--43956851	24	2.2	24	89	0	77	55	9	1	32	1.43
43958769--43958820	24	2.2	24	89	0	77	55	9	1	32	1.43
43961802--43961842	21	2.0	21	85	0	55	70	9	9	9	1.34
43962155--43962198	21	2.2	20	83	4	52	9	13	9	68	1.40
43964110--43964147	18	2.1	18	100	0	76	15	15	18	50	1.79
43974420--43974867	46	9.6	46	81	11	427	34	14	22	29	1.93
43974434--43974740	52	6.1	51	81	10	364	35	13	22	28	1.92
43974420--43974867	98	4.8	97	81	12	447	34	14	22	29	1.93
43974434--43974722	150	1.9	150	92	0	488	34	14	21	29	1.93
43974704--43974776	36	2.0	36	91	0	119	38	13	19	28	1.90
43974658--43974822	82	2.0	82	93	0	285	35	13	20	29	1.92
43977302--43977355	23	2.3	23	78	6	56	31	0	3	64	1.11
43978887--43979070	46	4.0	46	97	0	341	32	14	21	31	1.93
43979090--43979196	46	2.4	44	90	4	162	33	14	24	28	1.94
43980404--43980436	15	2.1	16	88	5	50	42	3	0	54	1.15
43982135--43982197	16	3.9	16	78	0	54	25	15	47	11	1.79
43999061--43999182	23	5.3	23	83	0	172	31	25	20	22	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43999061--43999182	46	2.7	46	96	0	217	31	25	20	22	1.98
43999400--43999438	18	2.2	17	86	13	53	46	20	0	33	1.51
44003915--44003949	15	2.4	15	90	4	54	48	0	8	42	1.33
44006489--44006537	9	5.4	9	87	0	62	26	10	24	38	1.87
44006809--44006861	26	2.1	25	85	3	70	35	22	18	22	1.95
44009535--44009576	22	1.9	22	85	0	57	35	21	16	26	1.94
44014025--44014062	18	2.1	18	85	9	51	36	0	0	63	0.95
44014840--44014865	5	5.2	5	100	0	52	38	19	19	23	1.93
44015373--44015424	16	3.0	16	81	13	59	42	0	32	25	1.55
44015673--44015733	30	2.0	31	90	3	97	36	0	44	19	1.51
44015782--44015818	9	4.1	9	89	0	56	29	8	13	48	1.71
44025814--44025882	38	1.9	37	85	11	99	39	5	0	55	1.24
44027834--44027877	22	1.9	22	86	9	61	50	11	2	36	1.51
44033503--44033540	18	2.1	18	85	9	51	15	15	7	60	1.57
44033528--44033658	12	10.2	12	70	11	55	28	14	8	48	1.72
44033571--44033650	25	3.2	25	80	7	74	27	15	10	47	1.77
44035210--44035265	19	2.9	19	74	15	62	46	25	8	19	1.79
44035213--44035271	9	6.4	9	83	11	66	42	25	10	22	1.84
44035646--44036091	245	1.8	245	97	0	838	40	6	16	37	1.73
44038018--44038044	14	1.9	14	100	0	54	48	0	22	29	1.51
44039636--44039884	50	4.8	50	85	4	284	20	29	24	26	1.99
44039635--44039884	100	2.4	104	88	6	357	20	29	24	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44039979--44040010	13	2.5	13	94	0	55	56	12	0	31	1.37
44040222--44040279	30	1.9	30	89	0	89	31	24	3	41	1.71
44041781--44041807	12	2.2	12	100	0	54	25	25	14	33	1.95
44042784--44042818	18	1.9	18	88	0	52	42	11	11	34	1.77
44047050--44047720	342	2.0	343	94	0	1173	30	8	21	39	1.83
44049480--44049523	23	1.9	23	86	9	63	50	13	6	29	1.68
44049504--44049649	49	3.0	48	73	16	115	54	12	6	26	1.62
44049598--44049631	14	2.4	14	90	0	50	64	5	5	23	1.38
44050598--44050728	33	4.0	33	89	0	190	19	23	16	41	1.90
44057800--44057849	27	1.9	26	88	8	75	60	4	2	34	1.27
44062205--44062231	14	1.9	14	100	0	54	7	25	0	66	1.17
44066666--44066691	12	2.2	12	100	0	52	34	7	0	57	1.27
44071914--44072030	46	2.6	46	87	2	166	34	13	23	29	1.93
44073363--44073388	13	2.0	13	100	0	52	23	7	0	69	1.14
44094570--44094626	25	2.3	25	84	0	69	40	12	5	42	1.65
44094864--44094945	23	3.4	23	81	8	85	30	19	25	24	1.98
44094864--44094955	23	3.9	23	75	15	80	30	19	26	23	1.98
44100735--44100871	28	5.2	27	68	21	78	24	10	0	64	1.29
44100806--44100926	53	2.4	49	79	12	118	21	10	4	63	1.43
44100755--44100926	54	3.3	49	75	16	136	22	11	3	63	1.42
44102296--44102336	10	4.1	10	77	22	50	31	17	0	51	1.46
44105008--44105064	24	2.4	24	82	5	62	35	0	8	56	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44110019--44110084	34	1.9	34	87	6	98	31	7	15	45	1.74
44113564--44113593	9	3.3	9	95	0	51	60	6	0	33	1.23
44113555--44113592	15	2.5	15	91	0	58	55	7	2	34	1.43
44119085--44119142	22	2.6	22	84	7	73	43	17	3	36	1.66
44119098--44119191	19	4.6	19	83	10	107	40	15	7	36	1.76
44119121--44119188	19	3.5	19	90	7	109	38	14	8	38	1.78
44120767--44120809	18	2.3	19	84	15	54	41	0	4	53	1.21
44128793--44128837	18	2.6	18	85	3	56	71	0	2	26	0.98
44128912--44128960	22	2.2	22	82	7	55	48	4	2	44	1.33
44130660--44130756	48	2.0	48	100	0	194	51	12	9	26	1.69

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196