genome.fa.s25.2.7.7.80.10.50.1000.112.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D12
Parameters: 2 7 7 80 10 50 1000
Length:  58873029

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   

This is table  112  of  196  ( 23409 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33928976--33929032	19	2.9	20	86	5	89	24	26	3	45	1.69
33930731--33930899	50	3.3	51	81	5	162	28	19	27	23	1.98
33930776--33930899	50	2.5	50	86	0	167	29	21	27	20	1.98
33931171--33931209	12	3.2	12	85	0	51	51	5	23	20	1.67
33935067--33935214	50	2.8	54	86	8	189	25	20	30	23	1.99
33938111--33938298	50	3.8	49	81	4	189	32	24	15	27	1.96
33938116--33938298	101	1.8	101	84	7	255	32	24	15	26	1.96
33945796--33945974	51	3.5	51	88	2	236	31	27	15	25	1.95
33951003--33951031	14	2.0	15	93	6	51	44	0	20	34	1.52
33956176--33956504	27	12.3	27	78	11	306	44	16	15	23	1.86
33956201--33956504	133	2.3	132	85	6	400	44	16	14	24	1.85
33956331--33956533	27	7.6	26	84	7	124	43	17	15	23	1.86
33956460--33956533	26	2.8	26	85	6	87	41	17	14	25	1.88
33966196--33966551	27	13.2	27	85	5	386	43	17	16	21	1.87
33970587--33970624	19	2.0	19	85	10	51	57	0	2	39	1.12
33977668--33977940	44	6.3	44	68	16	156	28	23	21	26	1.99
33977906--33978187	141	2.0	141	90	1	449	28	21	20	29	1.98
33978104--33978298	44	4.4	43	76	10	153	29	21	20	29	1.98
33978179--33978300	45	2.7	45	79	13	128	27	24	18	29	1.98
33977689--33978383	358	1.9	358	91	1	1124	28	22	20	28	1.98
33991151--33991193	22	2.0	22	86	9	61	76	6	0	16	0.99
34022083--34022218	25	5.5	23	74	15	103	23	21	22	32	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34022072--34022218	49	3.0	49	84	5	190	23	21	22	33	1.97
34027227--34027266	20	2.0	20	90	0	62	47	12	2	37	1.55
34029591--34029742	42	3.6	42	81	6	180	35	27	16	20	1.94
34029712--34029764	26	2.0	26	81	0	61	30	30	20	18	1.97
34029719--34029771	26	2.0	26	88	0	79	24	33	22	18	1.97
34029990--34030021	16	2.0	16	93	0	55	43	9	6	40	1.62
34036179--34036210	10	3.2	10	95	0	55	62	9	0	28	1.26
34043412--34043518	26	4.1	26	78	4	126	35	25	20	18	1.95
34043727--34044041	80	3.9	81	81	5	370	21	14	18	44	1.86
34043713--34044043	27	12.3	27	81	6	336	21	16	18	44	1.87
34051046--34051100	28	2.0	28	88	0	83	36	20	21	21	1.95
34051208--34051288	26	3.1	25	74	13	74	38	23	17	20	1.93
34051467--34051573	27	4.0	27	80	6	74	20	17	19	42	1.90
34051527--34051731	80	2.5	81	88	0	286	23	17	16	42	1.88
34051485--34051786	107	2.8	106	83	4	358	22	16	18	41	1.90
34051483--34051786	27	11.3	27	80	4	294	22	16	18	41	1.90
34051478--34051786	81	3.8	80	81	4	327	22	16	18	41	1.90
34056904--34056958	25	2.2	25	86	0	83	25	20	23	30	1.98
34057389--34057427	19	2.1	19	90	0	60	43	12	2	41	1.56
34058490--34058642	35	4.4	35	74	6	114	28	16	16	37	1.91
34062980--34063036	26	2.2	26	93	0	96	43	10	10	35	1.74
34068084--34068255	93	1.8	93	96	0	317	27	30	20	20	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34068077--34068252	46	3.8	46	79	12	216	28	30	20	20	1.98
34075585--34075713	46	2.8	46	94	2	215	29	29	20	20	1.98
34081241--34081330	38	2.3	40	86	5	123	26	27	23	22	1.99
34081241--34081402	38	4.3	39	73	21	116	26	27	20	24	1.99
34089271--34089495	80	2.8	80	84	6	296	26	27	21	24	1.99
34089271--34089495	119	1.9	120	84	6	305	26	27	21	24	1.99
34089271--34089495	40	5.6	41	85	6	268	26	27	21	24	1.99
34107403--34107443	19	2.1	20	86	4	57	31	9	2	56	1.45
34107604--34107628	12	2.1	12	100	0	50	36	8	0	56	1.29
34112627--34112668	8	5.2	8	85	0	57	80	2	2	14	0.90
34114625--34114690	29	2.3	29	97	0	123	36	16	18	28	1.93
34116234--34116284	22	2.3	22	86	0	84	66	0	23	9	1.21
34123834--34123890	28	2.0	28	93	0	96	33	24	19	22	1.97
34124000--34124072	26	2.8	26	85	0	92	35	19	26	19	1.95
34124252--34124408	53	2.9	54	91	1	244	23	16	17	42	1.89
34124252--34124408	27	5.9	27	87	1	208	23	16	17	42	1.89
34127807--34127876	26	2.7	26	73	4	70	22	20	30	27	1.98
34129585--34129615	16	1.9	16	93	0	53	35	12	0	51	1.40
34143590--34143619	13	2.3	13	100	0	60	6	6	23	63	1.43
34145896--34146073	27	6.6	27	84	3	205	29	28	15	26	1.96
34145917--34146072	82	1.9	81	88	3	233	29	28	15	26	1.96
34154013--34154190	27	6.6	27	84	3	205	29	28	15	26	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34154034--34154189	82	1.9	81	88	3	233	29	28	15	26	1.96
34169466--34169493	14	2.0	14	100	0	56	28	7	0	64	1.20
34169941--34169978	19	2.0	19	85	10	51	21	42	0	36	1.53
34188598--34188672	20	3.8	20	70	0	69	29	21	36	13	1.91
34188610--34188706	40	2.4	40	82	3	106	27	20	36	15	1.93
34188689--34188764	40	1.9	40	88	0	116	27	14	34	23	1.94
34188836--34188860	13	1.9	13	100	0	50	24	24	0	52	1.48
34199083--34199107	11	2.3	11	100	0	50	36	44	12	8	1.71
34200097--34200240	51	2.8	51	81	1	182	27	19	22	30	1.98
34201451--34201499	25	2.0	25	83	0	62	38	0	12	48	1.41
34201705--34201785	25	3.2	25	77	6	92	29	22	22	25	1.99
34203529--34203586	28	2.0	29	80	9	66	22	6	15	55	1.64
34204649--34204877	116	2.0	116	86	3	327	45	3	7	42	1.51
34204480--34204768	136	2.1	136	92	2	377	44	5	8	41	1.57
34204853--34204999	75	2.0	75	83	0	186	36	10	8	45	1.68
34205380--34205417	18	2.2	17	86	13	51	65	0	2	31	1.06
34212106--34212149	18	2.3	18	84	11	52	45	4	2	47	1.35
34213487--34213517	16	1.9	16	100	0	62	32	6	29	32	1.83
34219734--34219813	42	1.9	42	94	0	142	31	3	1	63	1.20
34219750--34219830	31	2.6	30	86	9	101	29	3	1	65	1.17
34219739--34219803	11	6.1	11	75	20	66	36	1	1	60	1.16
34219733--34219828	42	2.4	42	84	8	119	31	3	1	64	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34220544--34220605	11	5.6	11	73	7	54	29	53	6	11	1.61
34220533--34220605	22	3.3	22	82	0	83	28	53	5	12	1.60
34223184--34223231	25	2.0	24	84	12	62	41	22	20	14	1.89
34223183--34223372	24	7.7	26	70	12	87	39	20	23	16	1.92
34230679--34230726	25	2.0	24	87	4	69	39	22	22	14	1.91
34230675--34230753	24	3.2	25	83	7	99	39	21	24	15	1.91
34230806--34230861	26	2.2	26	87	6	78	35	17	28	17	1.93
34236222--34236258	18	1.9	19	89	10	58	40	0	2	56	1.13
34236406--34236431	12	2.2	12	100	0	52	38	15	7	38	1.76
34239842--34239893	27	1.9	27	84	0	68	32	21	21	25	1.98
34239899--34240020	24	5.1	24	81	0	127	27	7	20	45	1.77
34240148--34240201	26	2.1	26	89	0	81	14	18	29	37	1.91
34240216--34240390	32	5.5	32	82	5	203	25	20	18	36	1.95
34240209--34240390	64	2.9	62	86	4	247	24	19	19	36	1.95
34240209--34240404	63	3.1	63	81	6	227	23	19	19	37	1.94
34250379--34250525	54	2.7	55	87	4	210	26	24	12	36	1.91
34253474--34253617	43	3.4	42	86	4	182	28	14	27	29	1.95
34260916--34260948	17	1.9	17	88	11	50	24	33	6	36	1.80
34261231--34261265	17	2.0	18	88	5	54	25	25	22	25	2.00
34263293--34263618	161	2.0	162	96	0	609	32	20	18	29	1.96
34269190--34269285	35	2.7	35	76	6	104	27	16	16	39	1.90
34272248--34272281	10	3.4	10	100	0	68	17	0	26	55	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34272245--34272292	20	2.4	21	79	10	64	20	0	22	56	1.43
34274306--34274371	32	2.1	32	100	0	132	30	18	16	34	1.93
34277176--34277235	29	2.1	29	83	0	75	18	25	30	26	1.98
34278632--34278678	18	2.6	19	75	18	55	40	19	4	36	1.71
34280758--34280887	37	3.5	37	93	0	224	18	13	26	41	1.87
34280758--34280902	74	2.0	72	93	2	245	18	13	27	40	1.88
34282547--34282643	26	3.8	26	79	5	83	16	23	23	36	1.94
34282610--34282669	24	2.5	24	83	0	84	18	28	21	31	1.97
34290314--34290386	26	2.8	26	69	17	62	19	19	20	41	1.91
34293080--34293216	36	3.8	36	88	0	193	25	16	15	43	1.86

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196