genome.fa.s25.2.7.7.80.10.50.1000.169.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D12
Parameters: 2 7 7 80 10 50 1000
Length:  58873029

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   

This is table  169  of  196  ( 23409 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49437001--49437116	1	116.0	1	66	0	52	0	17	0	82	0.66
49437002--49437131	23	6.0	22	82	11	135	0	18	0	81	0.69
49437439--49437466	3	9.3	3	100	0	56	0	32	0	67	0.91
49437531--49437575	19	2.7	16	81	18	56	0	31	0	68	0.89
49437531--49437577	17	2.8	16	83	6	58	0	29	0	70	0.88
49437532--49437573	10	4.4	10	79	8	52	0	30	0	69	0.89
49437832--49437948	30	3.9	30	83	3	139	43	3	23	29	1.70
49437832--49437948	60	2.0	59	84	5	155	43	3	23	29	1.70
49438219--49438436	54	4.1	55	88	8	324	37	17	16	28	1.92
49438415--49438449	14	2.5	14	90	0	52	60	2	17	20	1.49
49438538--49438785	85	2.8	87	81	10	308	36	18	18	26	1.94
49438698--49438731	16	2.1	16	88	0	50	64	5	11	17	1.45
49438538--49438792	91	2.9	88	83	9	324	36	18	18	26	1.94
49438996--49439174	68	2.6	68	85	2	216	34	20	14	30	1.93
49438750--49439742	191	5.2	191	96	1	1823	35	20	13	30	1.91
49439065--49439307	122	2.0	120	83	3	308	37	19	13	30	1.90
49439186--49439378	71	2.7	69	81	7	217	37	20	13	28	1.91
49438750--49439741	381	2.6	383	96	1	1832	35	20	13	30	1.91
49439255--49439480	120	1.9	121	84	6	305	35	20	14	29	1.92
49443865--49443910	17	2.7	17	93	6	76	30	10	4	54	1.55
49451469--49451541	16	4.4	16	74	8	65	50	9	8	31	1.64
49451378--49451530	72	2.1	71	80	12	170	44	11	11	33	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49451469--49451564	18	5.6	17	72	17	74	51	9	10	29	1.67
49451500--49451559	15	3.6	16	80	12	59	48	8	11	31	1.69
49451469--49451563	19	5.5	17	74	18	72	50	9	10	29	1.68
49451736--49451782	20	2.5	19	77	16	53	44	8	17	29	1.78
49452140--49452226	8	10.1	8	78	14	93	0	17	0	82	0.66
49452137--49452226	17	5.2	17	80	14	112	0	17	0	82	0.68
49452141--49452225	26	3.3	25	79	12	91	0	17	0	82	0.67
49452140--49452226	35	2.5	35	83	9	115	0	17	0	82	0.66
49452317--49452370	15	3.6	14	79	18	56	1	11	22	64	1.35
49452345--49452418	31	2.3	32	84	11	89	1	6	20	71	1.16
49452441--49452465	6	4.2	6	100	0	50	0	0	48	52	1.00
49452536--49452573	3	12.3	3	84	15	51	0	31	0	68	0.90
49452929--49453045	30	3.9	29	75	11	85	44	2	23	29	1.66
49452944--49453045	30	3.4	30	83	2	125	44	2	23	29	1.68
49452916--49453045	60	2.2	59	79	4	145	43	2	21	32	1.65
49453327--49453376	18	2.8	18	84	6	66	36	2	10	52	1.47
49453347--49453419	39	1.9	37	86	5	101	31	2	4	61	1.29
49453345--49453428	38	2.2	39	80	6	100	35	2	3	58	1.28
49457309--49457340	11	2.9	11	95	0	55	40	0	31	28	1.57
49458481--49458540	28	2.1	28	81	6	68	41	1	1	55	1.20
49459136--49459183	19	2.5	19	81	18	55	58	0	8	33	1.28
49462366--49462428	23	2.8	23	90	2	92	47	1	1	49	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49462404--49462443	16	2.5	16	91	0	62	47	2	7	42	1.45
49462516--49462543	9	3.1	9	100	0	56	32	0	10	57	1.33
49462432--49462641	68	3.1	68	96	1	379	40	4	8	45	1.56
49462708--49462751	24	1.9	24	90	9	74	61	2	0	36	1.09
49463259--49463316	27	2.1	28	77	6	64	27	6	13	51	1.66
49465245--49465429	46	4.0	46	87	2	264	36	9	24	30	1.87
49467254--49467284	12	2.6	12	100	0	62	29	6	0	64	1.18
49467288--49467332	11	4.4	11	76	23	53	40	2	0	57	1.11
49467280--49467323	18	2.4	18	96	0	79	40	0	0	59	0.98
49467237--49467360	61	2.0	63	84	3	162	37	2	0	60	1.10
49471224--49471291	30	2.2	31	84	2	84	26	17	7	48	1.73
49471446--49471490	23	2.0	23	95	0	81	28	8	22	40	1.84
49472563--49472610	20	2.4	20	92	0	78	43	0	20	35	1.52
49472844--49472900	23	2.5	23	80	8	64	38	1	3	56	1.27
49472844--49472900	22	2.6	23	81	13	66	38	1	3	56	1.27
49475124--49475160	9	4.1	9	89	0	56	32	10	10	45	1.74
49475214--49475244	9	3.4	9	90	0	53	38	22	12	25	1.90
49484292--49484325	7	4.7	7	88	3	50	82	0	2	14	0.79
49489522--49489562	21	2.0	21	90	0	64	56	7	21	14	1.63
49492205--49492251	12	3.9	12	78	8	51	53	0	0	46	1.00
49502337--49502418	26	3.2	25	70	14	60	42	1	7	48	1.38
49504848--49504873	13	2.0	13	100	0	52	61	30	0	7	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49508952--49508990	7	5.4	7	84	6	51	46	35	0	17	1.49
49508952--49508981	14	2.1	14	100	0	60	46	33	0	20	1.51
49518152--49518195	19	2.1	21	88	12	65	52	0	0	47	1.00
49518163--49518270	57	1.9	57	83	11	141	52	0	0	46	1.06
49518150--49518275	19	6.8	19	63	27	56	49	0	0	50	1.06
49520220--49520265	21	2.2	22	84	7	60	19	34	23	21	1.96
49523488--49523527	20	2.0	20	90	0	62	27	10	12	50	1.72
49523473--49523539	34	1.9	35	90	3	109	31	8	13	46	1.74
49523467--49523543	14	5.0	15	71	20	52	33	9	14	42	1.77
49524241--49524375	48	2.8	47	79	3	137	37	15	21	25	1.93
49532957--49533003	19	2.6	18	83	6	58	29	2	2	65	1.15
49532971--49533009	18	2.1	19	85	4	53	25	2	2	69	1.14
49532971--49533010	19	2.1	19	86	9	55	25	2	2	70	1.13
49534205--49534255	13	3.9	13	78	0	57	33	5	25	35	1.80
49534745--49534862	62	1.9	62	98	0	227	49	9	10	31	1.68
49535180--49535205	5	5.2	5	100	0	52	57	42	0	0	0.98
49541012--49541069	28	2.1	28	100	0	116	62	10	10	17	1.54
49541382--49541436	26	2.2	25	83	9	67	50	1	1	45	1.22
49548893--49548952	6	9.7	6	76	16	52	20	0	1	78	0.84
49548895--49548977	5	16.4	5	75	16	57	20	2	1	75	0.98
49548894--49548948	13	4.2	13	76	15	60	18	0	1	80	0.81
49548901--49548984	22	3.6	22	76	17	73	21	2	1	75	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49548897--49548992	31	3.3	28	82	13	99	21	3	1	73	1.03
49550172--49550206	15	2.4	15	90	4	54	48	0	8	42	1.33
49552373--49552433	26	2.4	26	88	2	88	31	11	13	44	1.79
49552706--49552734	9	3.0	10	90	10	51	20	20	0	58	1.39
49554738--49554789	19	2.7	20	85	8	63	32	3	0	63	1.12
49556266--49556314	23	2.2	22	82	7	55	30	2	2	65	1.15
49564627--49564796	90	1.8	92	85	5	236	38	16	7	37	1.77
49564738--49564870	69	2.0	68	83	3	169	33	21	8	36	1.84
49564738--49564881	68	2.1	68	82	5	166	34	22	7	36	1.83
49564487--49565185	257	2.8	254	87	4	988	35	18	7	39	1.78
49564803--49565057	93	2.7	94	84	4	329	35	19	7	38	1.80
49565206--49565329	67	1.9	65	88	6	187	44	4	9	41	1.58
49565596--49565635	20	2.0	20	85	4	55	32	2	2	62	1.22
49565900--49565928	10	2.7	11	94	5	51	0	13	0	86	0.58
49566272--49566335	29	2.1	29	83	11	76	53	6	10	29	1.60
49579060--49579105	15	3.1	15	76	14	51	54	41	2	2	1.25
49579377--49579419	18	2.2	20	84	8	54	65	0	2	32	1.06
49579711--49579737	7	3.9	7	100	0	54	14	0	0	85	0.61
49579734--49579774	21	1.9	22	85	5	57	41	0	7	51	1.30
49581997--49582041	16	2.8	16	89	0	72	37	4	26	31	1.76
49581998--49582051	16	3.4	16	84	5	65	38	1	25	33	1.67
49598955--49598991	16	2.3	17	81	13	51	54	0	5	40	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49599023--49599079	15	3.5	15	71	17	51	49	1	1	47	1.22
49602477--49602503	5	5.4	5	100	0	54	18	0	0	81	0.69
49602477--49602510	15	2.3	15	89	0	50	17	2	0	79	0.86
49608082--49608162	25	3.2	25	65	22	69	48	11	14	25	1.77
49608068--49608171	51	2.0	51	98	0	199	50	9	13	26	1.72
49619070--49619128	31	1.9	31	96	0	109	54	6	20	18	1.66
49622922--49622985	22	2.9	22	75	11	67	40	6	1	51	1.36
49624248--49624422	41	4.3	41	91	0	287	24	27	20	28	1.99
49626375--49626473	23	4.3	23	88	5	155	32	27	20	20	1.97
49626381--49626470	46	2.0	46	97	0	171	32	27	20	20	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196