genome.fa.s25.2.7.7.80.10.50.1000.157.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D12
Parameters: 2 7 7 80 10 50 1000
Length:  58873029

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   

This is table  157  of  196  ( 23409 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46162989--46163034	7	6.6	7	78	16	51	60	10	0	28	1.30
46162989--46163034	15	3.3	15	82	11	62	60	10	0	28	1.30
46163064--46163788	9	81.4	9	75	9	614	48	17	1	33	1.57
46163565--46163738	66	2.5	67	79	10	183	45	19	0	35	1.51
46163662--46163777	41	2.8	42	82	7	123	44	20	0	33	1.58
46163750--46163795	7	6.0	7	87	9	56	52	17	2	28	1.56
46167440--46167508	21	3.3	21	83	0	84	36	18	42	2	1.66
46167957--46168165	43	4.9	43	90	4	284	24	22	21	31	1.99
46170251--46170306	23	2.4	24	79	8	71	58	0	1	39	1.08
46175401--46175428	13	2.2	13	100	0	56	39	21	0	39	1.54
46175635--46175707	29	2.6	29	91	4	105	65	0	2	31	1.06
46175596--46175726	40	3.2	40	78	9	122	62	0	3	33	1.16
46176625--46176669	24	1.9	23	82	13	56	48	24	6	20	1.73
46177617--46177660	21	2.2	19	84	8	52	50	18	20	11	1.77
46180140--46180166	6	4.5	6	100	0	54	14	14	14	55	1.70
46190896--46191255	133	2.7	133	83	1	436	29	18	23	28	1.98
46190896--46191092	89	2.2	88	92	2	340	29	18	23	27	1.98
46190896--46191166	89	3.1	89	86	3	280	30	18	24	26	1.98
46190896--46191183	44	6.5	45	79	2	278	29	18	24	27	1.98
46193599--46193832	101	2.3	101	92	0	387	29	23	16	31	1.96
46197844--46197909	29	2.4	27	74	20	64	21	12	7	59	1.57
46198094--46198185	24	3.7	23	73	21	71	32	3	0	64	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46198093--46198175	35	2.4	35	84	9	100	32	3	0	63	1.11
46198130--46198175	17	2.7	17	86	10	67	34	4	0	60	1.16
46198095--46198191	52	1.9	50	85	12	135	32	3	0	63	1.10
46198095--46198198	16	6.2	16	75	18	79	32	2	0	63	1.16
46198130--46198189	7	7.7	7	76	20	57	35	3	0	61	1.12
46198130--46198198	17	4.2	17	78	17	65	34	2	1	60	1.20
46232082--46232114	17	1.9	18	88	11	52	48	0	9	42	1.35
46233400--46233508	41	2.6	41	94	1	182	22	28	21	27	1.99
46235404--46235445	19	2.2	20	86	4	59	42	11	4	40	1.63
46238451--46238510	30	2.0	31	86	3	86	20	36	0	43	1.52
46241130--46241193	25	2.6	25	78	11	69	21	14	17	46	1.83
46250940--46250983	17	2.6	17	89	7	63	34	6	20	38	1.79
46254133--46254222	38	2.2	40	82	11	121	54	6	2	36	1.39
46254327--46254371	20	2.4	18	80	16	56	46	4	0	48	1.22
46262180--46262218	4	9.8	4	100	0	78	48	25	0	25	1.51
46262375--46262430	26	2.1	27	93	3	96	58	7	0	33	1.25
46262420--46262454	12	2.9	12	86	0	52	82	8	0	8	0.83
46262384--46262439	26	2.2	26	80	6	60	71	3	0	25	1.02
46262490--46262556	27	2.5	27	87	4	91	28	28	26	16	1.97
46262637--46262673	11	3.5	11	88	7	58	70	0	29	0	0.88
46262700--46262738	19	2.0	21	85	10	55	23	0	10	66	1.22
46262784--46262824	3	13.3	3	94	5	73	31	0	2	65	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46262823--46262860	3	12.7	3	100	0	76	0	0	31	68	0.90
46262953--46263032	36	2.3	35	93	4	135	33	0	12	53	1.39
46265440--46265894	160	2.8	161	72	13	380	30	12	7	49	1.69
46265440--46265901	159	2.9	159	72	14	394	30	12	7	49	1.68
46266731--46266840	21	5.3	21	68	24	74	0	28	0	70	0.93
46266735--46266814	18	4.4	18	74	16	67	0	28	0	71	0.87
46266709--46266913	40	5.4	38	73	18	119	0	31	0	67	0.97
46266762--46266916	4	37.0	4	72	16	93	0	31	1	67	0.99
46266733--46266872	44	3.3	44	75	15	152	0	29	0	70	0.93
46266708--46266840	53	2.6	53	79	11	136	0	28	0	70	0.92
46266706--46266872	82	2.0	82	85	7	223	0	29	0	70	0.92
46266745--46266925	82	2.2	82	82	10	212	0	32	1	66	0.99
46266960--46267026	27	2.5	27	92	0	107	16	26	28	28	1.97
46267082--46267157	27	2.7	28	91	6	127	47	0	6	46	1.28
46269131--46269178	25	1.9	25	95	0	87	41	10	10	37	1.74
46269137--46269193	25	2.3	25	81	6	71	45	14	10	29	1.78
46269634--46269696	31	2.0	31	96	0	117	46	23	3	26	1.68
46284270--46284326	29	2.0	29	89	0	87	31	29	3	35	1.75
46284960--46285020	20	3.0	20	76	7	61	39	1	4	54	1.32
46287789--46287850	31	2.0	31	96	0	115	27	29	25	17	1.98
46291156--46291385	62	3.7	62	92	0	388	36	5	9	49	1.58
46291710--46291831	62	2.0	62	81	0	145	28	8	38	24	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46291979--46292024	24	1.9	24	86	0	65	10	32	32	23	1.90
46294618--46294651	17	2.1	16	94	5	59	2	17	0	79	0.86
46294620--46294657	17	2.2	17	86	9	51	2	26	0	71	1.00
46296468--46296567	41	2.5	42	88	4	143	25	23	11	41	1.87
46298760--46298868	41	2.7	41	88	0	155	23	27	18	30	1.98
46298844--46299038	41	4.8	41	84	5	209	31	24	17	26	1.97
46300635--46300686	23	2.3	23	100	0	104	25	7	11	55	1.61
46305240--46305282	21	2.0	21	95	0	77	27	0	37	34	1.57
46305263--46305295	16	2.1	16	94	0	57	33	0	36	30	1.58
46305274--46305368	45	2.1	44	88	1	136	34	5	27	32	1.79
46305530--46305564	18	2.0	17	88	5	52	54	0	0	45	0.99
46305488--46305560	27	2.7	27	76	8	76	52	2	0	45	1.15
46305449--46305720	144	1.9	147	93	3	478	46	3	2	47	1.35
46305674--46305708	18	2.0	17	88	5	52	54	0	0	45	0.99
46305657--46305875	119	1.8	119	97	0	411	49	6	1	42	1.36
46305793--46305827	18	2.0	17	88	5	52	60	0	0	40	0.97
46305868--46305914	17	2.9	16	78	18	53	46	2	6	44	1.40
46305887--46305920	17	2.0	17	94	0	59	50	0	5	44	1.26
46305953--46306147	93	2.1	92	88	4	286	47	4	4	44	1.41
46311676--46311751	37	2.1	37	100	0	152	36	15	15	31	1.90
46321322--46321373	24	2.2	24	85	0	68	40	1	7	50	1.42
46326939--46326991	25	2.1	25	82	6	63	26	5	5	62	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46328653--46328706	27	2.0	27	85	0	72	35	3	7	53	1.47
46335775--46335816	22	2.0	21	90	4	66	66	0	7	26	1.17
46348855--46348997	70	2.0	70	100	0	286	40	23	12	23	1.89
46352091--46352176	41	2.2	38	82	16	95	30	3	6	59	1.41
46352152--46352190	18	2.0	20	85	9	55	20	5	10	64	1.44
46352549--46352575	5	5.4	5	100	0	54	62	0	0	37	0.95
46353198--46353234	14	2.8	14	88	8	51	48	0	2	48	1.15
46365807--46365851	23	2.0	23	82	8	56	37	6	0	55	1.26
46366218--46366243	9	2.9	9	100	0	52	11	0	19	69	1.18
46367927--46367952	12	2.2	12	100	0	52	42	23	0	34	1.54
46369103--46369169	30	2.2	30	97	0	125	26	37	17	17	1.93
46370181--46370275	30	3.1	31	85	10	115	44	2	0	53	1.12
46371984--46372078	47	2.2	43	83	12	115	31	15	23	29	1.95
46372000--46372102	47	2.2	47	91	0	161	30	14	21	33	1.93
46372503--46372532	15	2.0	15	93	0	51	30	10	0	60	1.30
46374412--46374443	16	1.9	16	93	6	55	71	0	0	28	0.86
46376211--46376257	20	2.5	19	87	12	71	51	0	2	46	1.13
46376261--46376317	11	5.2	11	74	16	55	56	3	1	38	1.27
46388173--46388221	16	3.1	16	87	0	71	40	2	32	24	1.67
46388433--46388474	15	2.7	16	82	14	52	52	2	0	45	1.13
46388442--46388483	15	2.9	15	82	10	52	52	0	0	47	1.00
46388552--46388603	15	3.6	15	80	12	56	53	1	0	44	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46388682--46388723	15	2.9	15	82	10	52	52	0	0	47	1.00
46388792--46388843	15	3.6	15	80	12	56	53	1	0	44	1.11
46388436--46388968	120	4.4	120	96	0	969	49	5	2	42	1.39
46388909--46389191	91	3.0	93	83	9	301	48	3	3	44	1.37
46389016--46389159	47	3.1	46	64	25	106	50	4	2	43	1.33
46388984--46389191	91	2.3	90	90	5	319	47	4	3	45	1.39
46389009--46389151	44	3.2	43	67	18	112	48	3	2	45	1.31
46389034--46389172	47	3.0	47	68	17	137	49	4	2	43	1.34
46392140--46392177	20	1.9	20	88	0	58	76	5	2	15	1.08
46393052--46393723	132	5.1	132	93	1	1010	28	23	18	29	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196