genome.fa.s25.2.7.7.80.10.50.1000.62.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D12
Parameters: 2 7 7 80 10 50 1000
Length:  58873029

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   

This is table  62  of  196  ( 23409 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17591108--17591299	50	3.8	50	80	3	179	22	30	21	25	1.99
17591108--17591289	100	1.8	101	89	3	287	21	30	21	26	1.99
17592534--17592587	28	1.9	28	96	0	99	29	20	24	25	1.99
17592951--17593314	27	13.6	27	79	8	331	21	20	16	41	1.90
17592953--17593321	81	4.6	79	81	8	387	21	20	17	41	1.90
17592969--17593361	27	14.7	27	76	12	307	21	19	17	41	1.91
17592968--17593361	54	7.4	54	81	7	399	21	19	17	41	1.91
17596771--17596828	25	2.3	25	90	0	89	32	24	17	25	1.96
17596782--17596839	25	2.3	25	90	0	89	34	24	17	24	1.96
17602778--17602842	32	2.0	32	87	0	94	18	21	16	43	1.88
17614221--17614275	25	2.2	26	90	3	85	38	9	20	32	1.84
17615825--17615881	30	1.9	30	96	3	107	38	7	17	36	1.77
17617391--17617447	25	2.3	24	78	3	60	29	22	15	31	1.95
17621817--17621872	24	2.3	24	90	0	94	39	16	21	23	1.92
17635401--17635464	18	3.6	17	71	20	51	17	4	0	78	0.92
17635409--17635472	27	2.4	25	77	10	65	18	6	0	75	1.01
17635724--17635781	21	2.7	22	84	10	68	13	6	17	62	1.52
17635732--17635791	21	2.8	21	82	10	68	10	6	25	58	1.55
17638673--17638705	13	2.5	13	95	0	57	33	0	18	48	1.48
17647300--17647387	38	2.3	38	92	2	140	45	19	7	27	1.78
17649331--17649360	15	2.0	15	93	0	51	56	6	6	30	1.51
17662099--17662148	17	2.9	17	93	0	91	24	26	6	44	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17663221--17663252	11	2.9	11	100	0	64	46	25	0	28	1.53
17666732--17666781	17	2.9	17	87	0	82	24	24	6	46	1.75
17668237--17668281	19	2.3	21	77	14	51	22	42	0	35	1.54
17668254--17668312	30	1.9	31	86	3	84	22	40	1	35	1.64
17681499--17681553	27	2.0	28	92	3	94	36	10	30	21	1.88
17690931--17691003	10	7.0	10	75	13	58	38	0	4	57	1.18
17690933--17690992	22	2.7	22	97	0	111	40	0	3	56	1.16
17690943--17690982	12	3.5	12	75	25	50	42	0	2	55	1.13
17693636--17693941	27	11.3	27	87	4	375	19	18	17	44	1.87
17696516--17696614	39	2.5	39	88	0	144	46	19	3	31	1.65
17700505--17700552	24	2.0	24	100	0	96	25	4	25	45	1.71
17702963--17703056	42	2.2	42	83	3	127	46	17	14	21	1.83
17719233--17719261	15	1.9	15	100	0	58	31	0	0	68	0.89
17728386--17728428	22	1.9	23	90	4	70	53	0	2	44	1.13
17728390--17728519	40	3.3	39	89	5	188	60	0	3	36	1.12
17739985--17740123	68	2.1	67	83	1	170	33	17	24	25	1.96
17742440--17742601	77	2.0	81	83	9	208	24	12	18	44	1.84
17743062--17743094	12	2.8	12	90	9	50	6	21	51	21	1.69
17748953--17749250	120	2.5	120	97	0	560	43	1	5	49	1.33
17749004--17749192	59	3.2	59	72	11	213	42	0	4	52	1.24
17749483--17749547	16	4.1	16	87	0	103	21	33	4	40	1.74
17751491--17751533	21	2.0	21	95	0	77	53	13	16	16	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17758828--17758998	50	3.4	50	77	8	136	29	21	28	20	1.98
17759187--17759218	13	2.5	13	100	0	64	37	6	15	40	1.73
17759221--17759269	20	2.5	20	81	15	66	57	6	24	12	1.58
17769743--17769799	23	2.5	23	91	0	87	15	19	17	47	1.83
17777919--17777946	8	3.5	8	100	0	56	21	14	35	28	1.92
17783440--17783542	48	2.1	49	89	1	154	49	9	8	32	1.66
17786800--17786916	44	2.6	45	71	18	127	48	9	12	29	1.72
17804907--17804945	7	5.4	7	90	6	60	17	51	0	30	1.46
17811983--17812020	13	2.8	14	80	19	53	65	0	5	28	1.14
17812611--17812654	17	2.6	17	85	3	63	47	0	11	40	1.39
17812583--17812686	33	3.3	33	69	22	80	51	1	11	34	1.49
17812825--17812854	7	4.4	7	95	4	53	70	0	0	30	0.88
17813146--17813214	19	3.5	19	82	7	93	34	13	11	40	1.80
17813656--17813772	44	2.7	44	81	2	137	28	21	18	31	1.97
17813751--17813853	44	2.4	43	82	4	120	31	20	21	27	1.98
17813786--17813876	44	2.1	44	81	4	103	28	19	19	31	1.97
17814064--17814388	88	3.7	89	78	6	279	24	24	23	27	2.00
17820601--17820688	30	2.8	33	80	14	91	59	5	2	32	1.34
17820700--17820747	23	2.1	24	85	14	66	62	0	8	29	1.24
17820799--17820869	17	4.3	17	72	10	58	49	2	12	35	1.56
17820995--17821024	3	10.0	3	92	0	51	66	3	0	30	1.07
17821354--17821423	19	3.5	20	92	7	117	35	14	11	38	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17834292--17834367	33	2.3	33	88	6	111	23	26	26	23	2.00
17840679--17840730	27	1.9	27	96	0	95	40	17	19	23	1.91
17840682--17840743	27	2.3	27	85	0	88	45	20	14	19	1.85
17841192--17841247	28	2.0	28	92	0	94	19	23	26	30	1.98
17846357--17846427	36	2.0	36	97	0	133	35	16	14	33	1.89
17851104--17851148	24	1.9	23	86	4	63	57	2	6	33	1.37
17852887--17852997	44	2.5	43	80	2	123	29	17	22	30	1.96
17853191--17853341	51	3.0	51	78	0	158	27	27	17	26	1.98
17853457--17853598	44	3.2	44	76	4	169	28	26	18	26	1.98
17853434--17853606	88	2.0	88	90	2	276	27	27	17	27	1.98
17873249--17873366	58	2.0	58	95	0	209	38	21	9	30	1.85
17889051--17889271	40	5.5	40	86	0	298	34	18	28	17	1.94
17889070--17889215	20	7.3	20	63	9	73	34	17	30	17	1.93
17889167--17889235	20	3.5	20	71	0	57	34	20	31	13	1.91
17897115--17897234	62	1.9	62	96	3	224	40	16	5	37	1.73
17899753--17899956	59	3.4	59	92	0	345	52	8	4	33	1.53
17901896--17901921	11	2.4	11	100	0	52	73	0	7	19	1.07
17901869--17901914	20	2.3	20	75	17	51	67	0	2	30	1.03
17905948--17905992	22	2.0	22	91	0	72	33	2	15	48	1.57
17909692--17909736	22	2.0	22	91	0	72	33	2	15	48	1.57
17912392--17912424	14	2.3	15	89	5	50	3	18	0	78	0.87
17912971--17912997	6	4.5	6	100	0	54	14	0	48	37	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17914408--17914791	127	3.1	126	90	2	567	28	15	21	33	1.95
17917974--17918017	7	6.4	7	86	2	54	22	0	38	38	1.55
17917978--17918017	21	2.0	20	90	5	62	22	0	40	37	1.54
17917994--17918613	29	21.4	29	86	6	719	29	1	25	44	1.61
17918024--17918069	23	2.0	23	91	4	74	32	0	26	41	1.56
17918406--17918629	28	8.5	24	71	20	139	29	3	22	44	1.68
17918583--17918643	19	3.0	19	83	9	59	31	3	18	47	1.64
17920777--17920810	15	2.3	15	90	5	52	67	5	2	23	1.26
17920909--17920964	29	2.0	29	85	3	78	58	3	1	35	1.26
17921006--17921047	22	1.9	22	90	0	66	33	0	33	33	1.58
17921049--17921125	22	3.5	22	87	1	111	38	1	27	32	1.65
17931217--17931314	41	2.4	41	87	0	151	25	26	20	27	1.99
17931975--17932027	12	4.2	12	77	13	52	43	7	3	45	1.50
17938830--17939069	84	2.9	84	95	0	444	35	25	17	21	1.95
17942036--17942082	17	2.8	17	79	20	62	36	2	6	55	1.37
17946282--17946322	16	2.5	16	88	11	57	41	2	2	53	1.27
17946910--17946950	16	2.5	16	92	4	64	41	2	0	56	1.13
17945962--17947141	628	1.9	627	97	0	2254	33	13	12	39	1.83
17952751--17952792	21	2.1	19	86	8	57	16	4	9	69	1.33
17953454--17953546	41	2.3	41	79	7	107	24	2	11	61	1.41
17956907--17956944	15	2.4	16	86	4	51	23	2	28	44	1.67
17956977--17957075	39	2.5	39	80	3	101	30	3	20	46	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17961464--17961496	11	2.9	12	86	13	52	6	18	0	75	1.00
17961461--17961503	12	3.9	11	82	17	54	6	16	0	76	0.99
17961500--17961555	28	2.0	29	89	3	87	21	5	8	64	1.42
17967115--17967205	32	2.8	32	84	0	119	38	20	19	20	1.94
17967252--17967306	27	2.0	27	83	13	69	30	20	23	25	1.98
17967380--17967461	24	3.4	24	76	3	76	50	20	6	23	1.71
17967527--17967709	54	3.4	53	81	6	210	24	18	18	38	1.93
17967527--17967730	27	7.6	27	77	7	182	24	18	19	38	1.93
17967526--17967719	107	1.8	108	87	5	295	23	19	19	37	1.94
17968789--17968822	17	2.0	17	88	11	52	14	2	5	76	1.09

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196