genome.fa.s25.2.7.7.80.10.50.1000.161.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D12
Parameters: 2 7 7 80 10 50 1000
Length:  58873029

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   

This is table  161  of  196  ( 23409 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47201752--47202282	234	2.3	232	84	3	676	31	21	18	28	1.97
47201943--47202282	73	4.4	73	82	11	358	30	20	17	31	1.96
47202056--47202283	75	2.9	79	86	9	288	32	20	17	30	1.95
47201991--47202282	159	1.8	157	89	1	458	30	21	17	30	1.96
47209674--47209716	22	2.0	22	95	0	77	20	25	11	41	1.86
47216252--47216535	153	1.9	149	81	5	338	44	11	11	31	1.77
47216712--47216737	6	4.3	6	100	0	52	15	50	34	0	1.45
47222565--47222628	26	2.4	27	82	10	69	56	3	3	37	1.31
47222587--47222633	25	1.9	24	86	4	67	51	2	2	44	1.25
47248424--47248452	8	3.6	8	100	0	58	75	0	0	24	0.80
47248376--47248503	59	2.2	59	76	15	133	71	0	3	25	1.00
47248413--47248520	33	3.5	30	71	19	80	75	0	1	22	0.89
47248371--47248527	7	22.7	7	74	16	64	73	0	2	23	0.95
47252205--47252265	5	12.2	5	92	0	104	59	1	0	39	1.08
47253966--47254056	23	4.0	23	88	0	137	31	25	21	20	1.98
47253965--47254055	46	2.0	46	93	0	155	30	25	21	21	1.99
47261326--47261415	23	4.0	22	88	2	135	31	26	22	20	1.98
47261325--47261414	45	2.0	46	93	2	155	30	26	22	21	1.99
47262800--47262857	29	2.0	29	100	0	116	55	10	0	34	1.34
47270781--47270826	21	2.2	21	88	0	65	2	30	54	13	1.50
47271037--47271070	17	2.0	17	88	0	50	64	0	0	35	0.94
47270978--47271071	40	2.3	40	85	8	145	64	0	2	32	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47271819--47272001	40	4.4	43	77	10	209	30	32	16	21	1.95
47271819--47272001	83	2.2	83	96	0	339	30	32	16	21	1.95
47277582--47277631	25	2.0	25	88	0	73	40	22	18	20	1.92
47279472--47279523	25	2.1	24	85	3	68	38	25	21	15	1.92
47279827--47279881	20	2.7	21	72	11	51	49	18	0	32	1.48
47279997--47280040	21	2.1	21	86	0	61	36	22	0	40	1.54
47287979--47288166	42	4.8	41	78	15	209	27	20	17	34	1.95
47288038--47288103	31	2.1	32	94	2	116	31	19	12	36	1.89
47287997--47288146	73	2.1	73	89	2	230	29	20	14	36	1.92
47288070--47288183	42	2.8	40	86	5	122	29	21	14	33	1.94
47288699--47288741	20	2.2	20	91	4	70	62	0	9	27	1.25
47288787--47288825	18	2.2	18	85	0	51	61	2	2	33	1.23
47294860--47295653	89	9.2	86	66	18	289	27	23	20	28	1.99
47294950--47295653	217	3.3	216	90	2	1108	27	23	20	28	1.99
47294812--47295666	44	19.7	43	71	16	275	27	23	20	28	1.99
47309367--47309545	88	2.0	88	91	4	290	45	12	13	28	1.80
47318142--47318423	125	2.3	125	87	4	399	31	15	21	31	1.95
47321616--47322650	29	35.6	29	86	3	1312	33	1	21	43	1.61
47322036--47322080	23	1.9	24	90	4	74	35	0	20	44	1.51
47322929--47322984	24	2.3	24	96	0	103	19	17	33	28	1.95
47323836--47323860	7	3.6	7	100	0	50	60	12	0	28	1.32
47324818--47324851	15	2.3	15	90	5	52	67	5	0	26	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47324928--47324972	20	2.2	21	84	4	56	53	0	2	44	1.13
47327080--47327127	22	2.1	23	84	3	62	35	56	4	4	1.38
47327458--47327557	27	3.8	26	78	12	96	33	12	19	36	1.88
47328253--47328295	19	2.3	19	80	11	54	51	0	4	44	1.22
47330897--47330931	19	1.9	17	88	11	52	8	14	28	48	1.73
47331924--47331981	21	2.8	20	89	5	82	43	18	25	12	1.85
47334686--47334770	17	5.2	16	68	17	50	38	3	3	54	1.35
47334679--47334803	48	2.6	49	84	5	155	39	3	4	53	1.36
47343134--47343158	13	1.9	13	100	0	50	32	0	4	64	1.12
47343505--47343573	13	4.8	13	70	19	57	42	7	4	46	1.51
47343524--47343620	23	4.3	23	75	12	101	41	5	9	44	1.59
47343492--47343597	45	2.4	45	98	0	203	40	5	7	46	1.56
47344056--47344099	22	2.0	22	95	0	79	9	20	27	43	1.82
47344160--47344430	43	6.3	43	79	5	244	28	29	19	22	1.98
47344160--47344433	129	2.1	129	81	4	311	28	29	18	22	1.98
47349325--47349384	10	5.7	11	75	18	56	46	5	0	48	1.24
47349318--47349392	29	2.5	29	81	12	82	48	5	1	45	1.33
47349318--47349390	30	2.4	30	82	8	87	49	4	1	45	1.29
47349325--47349387	20	3.1	20	77	11	74	44	4	0	50	1.23
47350701--47351061	104	3.5	104	88	2	519	32	29	19	18	1.96
47352571--47352637	14	4.9	14	74	3	55	43	37	1	17	1.59
47352571--47352630	7	8.7	7	76	10	52	41	38	1	18	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47353480--47353587	41	2.6	41	92	0	180	28	24	24	23	1.99
47357850--47357893	20	2.1	22	84	16	58	68	9	9	13	1.40
47360691--47360786	35	2.8	35	82	1	104	42	14	21	20	1.88
47361184--47361252	27	2.6	27	93	2	122	44	10	0	44	1.37
47361299--47361356	27	2.1	27	87	0	80	31	29	27	12	1.92
47361454--47361492	10	3.8	10	83	6	51	66	0	33	0	0.92
47361620--47361663	3	14.7	3	100	0	88	0	0	31	68	0.90
47362447--47362487	18	2.5	16	82	17	57	29	2	46	21	1.64
47367220--47367246	8	3.4	8	100	0	54	25	0	0	74	0.83
47367498--47367553	27	2.1	27	96	0	103	8	33	14	42	1.77
47368282--47368374	23	4.0	22	71	18	62	0	31	0	68	0.90
47368300--47368437	19	6.8	21	69	21	73	0	31	0	68	0.95
47368321--47368442	57	2.2	56	80	12	135	0	32	0	66	0.98
47368321--47368426	10	10.4	10	72	20	69	0	30	0	68	0.96
47368367--47368442	26	2.9	25	79	16	75	1	34	0	64	1.02
47368336--47368427	35	2.8	34	82	14	113	1	28	0	70	0.94
47368473--47368526	27	2.0	27	96	0	99	16	29	29	24	1.97
47368582--47368622	20	2.0	20	95	0	73	58	0	7	34	1.26
47368902--47368948	22	2.0	24	84	8	62	46	4	0	48	1.21
47370447--47370480	17	2.1	17	88	5	52	38	2	11	47	1.55
47380039--47380063	5	5.0	5	100	0	50	40	40	0	20	1.52
47381832--47381918	28	3.1	28	71	17	81	51	9	16	22	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47387160--47387476	47	6.6	48	93	2	532	32	7	29	30	1.86
47387160--47387476	96	3.3	96	93	1	548	32	7	29	30	1.86
47387160--47387476	143	2.2	144	96	1	591	32	7	29	30	1.86
47387444--47387508	32	2.0	32	96	0	121	29	12	33	24	1.92
47387339--47387570	128	1.8	125	88	2	356	31	9	31	27	1.88
47387689--47387767	37	2.1	37	88	4	115	25	18	30	25	1.98
47390103--47390181	37	2.1	37	88	4	115	25	30	18	25	1.98
47390300--47390475	47	3.7	47	89	1	246	27	31	9	31	1.88
47392684--47392753	27	2.6	26	95	2	95	31	28	12	27	1.93
47392684--47392781	28	3.5	28	88	2	126	31	27	13	27	1.94
47400756--47401210	47	9.6	47	93	1	739	29	29	8	32	1.87
47400756--47401210	143	3.2	143	94	1	761	29	29	8	32	1.87
47404934--47405011	36	2.1	37	90	2	122	25	30	19	24	1.98
47405130--47405501	47	7.9	47	96	0	665	29	30	8	31	1.87
47409205--47409384	40	4.6	40	89	3	249	26	26	22	25	2.00
47409690--47409768	29	2.7	29	86	5	106	27	32	15	24	1.95
47411671--47411749	37	2.1	37	88	4	115	25	30	18	25	1.98
47412947--47413187	41	5.9	41	86	1	306	19	16	31	32	1.94
47413554--47413616	21	3.0	20	82	13	56	20	0	42	36	1.52
47413578--47413637	29	2.1	29	80	0	66	21	3	40	35	1.70
47413579--47413638	22	2.8	21	85	9	77	23	3	40	33	1.71
47413586--47413638	14	3.7	14	72	5	52	22	3	41	32	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47413648--47413780	7	18.7	7	70	11	56	21	2	33	42	1.66
47413702--47413781	14	5.5	15	76	4	67	23	1	37	37	1.63
47427355--47427398	5	8.8	5	100	0	88	38	0	0	61	0.96
47427429--47427499	11	6.2	11	74	22	58	67	5	23	2	1.25
47441912--47441959	24	2.0	24	95	0	87	29	43	0	27	1.55
47445293--47445327	15	2.4	15	90	4	54	40	0	0	60	0.97
47445790--47445874	33	2.6	33	81	14	104	43	0	1	55	1.07
47445824--47445892	24	2.8	25	89	6	115	43	0	0	56	0.99
47448682--47448714	12	2.8	12	90	4	50	84	0	15	0	0.61
47448681--47448714	18	1.9	17	88	5	50	85	0	14	0	0.60

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196