genome.fa.s25.2.7.7.80.10.50.1000.127.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D12
Parameters: 2 7 7 80 10 50 1000
Length:  58873029

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   

This is table  127  of  196  ( 23409 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38130570--38130604	18	2.0	17	88	5	52	45	0	0	54	0.99
38130430--38130864	239	1.8	240	97	0	836	43	0	5	50	1.31
38130799--38131105	157	2.0	157	96	0	562	47	4	3	44	1.39
38130965--38130999	18	2.0	17	88	5	52	45	0	0	54	0.99
38131235--38131286	16	3.2	16	97	0	95	38	34	0	26	1.57
38131311--38131344	16	2.1	16	100	0	68	5	41	20	32	1.76
38132080--38132138	29	2.1	29	87	3	84	45	13	18	22	1.84
38134726--38134802	14	5.0	15	71	20	52	42	14	9	33	1.77
38134742--38134781	20	2.0	20	90	0	62	50	12	10	27	1.72
38134730--38134796	34	1.9	35	90	3	109	46	13	8	31	1.74
38136773--38137135	104	3.5	104	80	1	386	34	14	20	30	1.93
38143702--38143748	17	2.9	16	81	12	51	2	23	51	23	1.59
38143882--38143950	9	8.2	9	76	20	62	1	23	0	75	0.89
38143917--38143953	3	12.7	3	83	16	51	0	27	0	72	0.84
38143909--38143956	20	2.4	20	93	6	80	0	25	0	75	0.81
38144025--38144102	28	2.8	29	83	11	101	0	32	0	67	0.90
38144041--38144094	16	3.6	16	82	7	60	0	29	0	70	0.88
38144014--38144097	35	2.4	34	79	11	91	0	30	1	67	0.98
38144278--38144329	26	2.0	26	84	0	68	5	17	55	21	1.62
38146646--38146679	12	2.6	13	90	9	52	73	5	11	8	1.24
38151856--38151897	17	2.6	17	85	14	54	21	7	2	69	1.25
38164119--38164267	44	3.2	44	69	19	133	32	20	20	25	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38164082--38164293	94	2.3	94	85	4	286	32	20	19	27	1.97
38164124--38164298	50	3.6	50	71	17	161	32	21	19	26	1.97
38164326--38164479	44	3.5	44	78	1	148	31	21	18	28	1.97
38167734--38167886	63	2.4	63	93	0	252	18	19	25	35	1.95
38167734--38167925	63	3.0	61	82	7	197	21	19	23	34	1.97
38168021--38168126	26	4.3	26	71	14	80	16	21	22	38	1.93
38168544--38168591	15	3.0	17	74	20	50	39	0	22	37	1.55
38170880--38170923	19	2.4	19	84	3	54	4	18	4	72	1.19
38177687--38177725	17	2.3	17	95	0	69	41	12	7	38	1.72
38178112--38178151	21	1.9	21	84	0	53	65	0	17	17	1.28
38178963--38179399	44	9.9	44	91	3	700	32	11	21	34	1.89
38180239--38180276	20	1.9	20	88	0	58	5	18	5	71	1.25
38182613--38183095	210	2.3	208	83	4	580	35	16	19	28	1.93
38182932--38183146	54	4.1	54	68	13	171	41	15	19	23	1.89
38182625--38183095	101	4.5	102	81	7	493	35	16	19	27	1.94
38184882--38184978	19	5.3	19	70	13	62	40	2	0	57	1.10
38187402--38187447	3	15.3	3	90	0	74	63	0	4	32	1.14
38190377--38190418	14	3.4	12	81	15	50	35	2	0	61	1.09
38197139--38197203	32	2.0	32	90	0	103	40	10	13	35	1.80
38197168--38197260	45	2.1	45	93	0	159	35	16	15	33	1.89
38202101--38202171	16	4.4	16	85	0	88	39	4	23	32	1.74
38202102--38202171	32	2.2	32	89	0	104	40	2	24	32	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38202153--38202258	44	2.5	40	73	19	99	33	3	25	37	1.74
38202333--38202471	58	2.4	58	84	4	174	51	2	2	43	1.25
38210880--38210935	23	2.3	24	79	17	62	39	0	10	50	1.37
38213281--38213314	17	1.9	18	94	5	61	52	0	0	47	1.00
38215150--38215246	45	2.1	45	81	5	106	22	13	19	44	1.86
38216499--38216532	3	11.3	3	93	0	59	64	2	0	32	1.08
38218120--38218382	49	5.6	48	69	11	202	20	21	26	32	1.97
38218019--38218400	96	4.0	95	85	4	484	22	20	24	31	1.98
38218019--38218385	187	2.0	188	88	2	549	21	21	25	31	1.98
38231026--38231059	3	11.3	3	93	0	59	64	2	0	32	1.08
38231850--38231881	5	6.4	5	100	0	64	81	0	0	18	0.70
38234419--38234466	23	2.1	23	84	7	62	45	10	4	39	1.58
38238605--38238657	24	2.2	25	77	16	58	43	3	5	47	1.45
38240012--38240052	21	1.9	22	90	5	66	51	0	7	41	1.30
38240990--38241035	22	2.1	22	84	8	58	65	2	8	23	1.32
38242821--38242867	20	2.3	20	85	0	58	21	36	14	27	1.93
38256048--38256074	7	3.9	7	100	0	54	29	40	14	14	1.86
38258154--38258217	31	2.0	31	82	11	76	28	14	14	43	1.83
38258594--38258641	9	4.9	9	76	18	51	81	4	10	4	0.97
38260312--38260357	20	2.3	20	88	0	65	52	13	4	30	1.59
38260320--38260363	20	2.2	20	83	0	52	52	9	4	34	1.54
38264204--38264249	20	2.3	20	92	0	74	52	15	4	28	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38264212--38264255	20	2.2	20	83	0	52	52	9	4	34	1.54
38264524--38264975	226	2.0	226	100	0	904	35	10	18	35	1.84
38270115--38270144	6	5.0	6	100	0	60	16	16	33	33	1.92
38272837--38272901	20	3.3	19	75	14	60	58	1	0	40	1.07
38272821--38272957	9	14.4	9	72	13	71	64	1	1	32	1.12
38272906--38272957	20	2.7	20	79	5	63	69	1	0	28	0.99
38273140--38273322	9	19.0	9	67	20	52	30	4	1	63	1.25
38273142--38273194	11	5.2	11	71	17	51	26	3	0	69	1.05
38273211--38273283	19	3.9	18	79	15	76	28	4	0	67	1.09
38273224--38273283	28	2.2	26	88	5	84	28	3	0	68	1.05
38273210--38273322	19	6.0	19	70	20	60	30	3	0	64	1.16
38273217--38273312	37	2.6	39	80	8	112	31	4	0	64	1.12
38284691--38284721	2	15.5	2	100	0	62	48	0	0	51	1.00
38286082--38286121	21	2.0	20	85	9	55	40	5	2	52	1.37
38288772--38288821	14	3.5	14	74	15	57	54	10	0	36	1.34
38289085--38289131	25	1.9	23	83	12	58	63	10	2	23	1.37
38290279--38290316	20	1.9	20	88	0	58	42	7	21	28	1.81
38301771--38301801	14	2.2	14	94	0	53	48	12	0	38	1.42
38305692--38305828	23	6.0	22	77	12	109	18	4	35	42	1.70
38305700--38305825	48	2.7	45	84	8	139	17	4	34	42	1.70
38308978--38309106	4	32.2	4	98	0	249	49	24	0	26	1.50
38309014--38309202	56	3.4	56	86	4	213	44	24	5	25	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38313458--38313491	17	1.9	18	88	5	52	67	2	0	29	1.05
38313909--38313971	31	2.1	30	81	3	72	34	9	12	42	1.76
38315721--38315786	33	2.0	32	88	2	96	37	21	9	31	1.85
38316001--38316153	41	3.7	43	89	4	210	27	22	21	28	1.99
38318423--38318492	28	2.6	27	79	4	77	38	18	24	18	1.93
38321860--38321897	18	2.1	18	95	0	67	52	13	5	28	1.61
38321968--38322020	21	2.5	22	80	17	60	62	5	0	32	1.19
38322899--38322946	17	2.9	17	81	12	55	68	4	0	27	1.07
38322900--38322946	23	2.0	23	84	8	60	70	4	0	25	1.05
38322924--38322957	17	1.9	17	88	5	50	64	5	0	29	1.17
38324480--38324525	21	2.4	19	76	16	51	78	0	4	17	0.91
38324481--38324560	37	2.1	38	82	8	101	77	1	3	17	0.98
38325062--38325135	19	3.7	21	85	10	111	37	13	8	40	1.74
38329871--38329953	42	2.0	42	86	9	116	32	2	2	62	1.21
38339923--38339956	3	11.3	3	100	0	68	0	35	0	64	0.94
38340566--38340606	3	13.7	3	100	0	82	34	31	0	34	1.58
38340864--38340888	7	3.6	7	100	0	50	12	12	16	60	1.60
38340931--38340955	2	12.5	2	100	0	50	48	0	0	52	1.00
38345691--38345715	6	4.2	6	100	0	50	48	0	36	16	1.46
38346277--38346306	3	10.0	3	100	0	60	66	0	0	33	0.92
38346351--38346381	5	6.2	5	100	0	62	58	19	0	22	1.40
38349557--38349782	121	1.9	120	85	2	312	27	19	15	37	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38360238--38360267	14	2.1	14	93	0	51	50	0	16	33	1.46
38364844--38364899	24	2.3	24	93	0	94	35	17	26	19	1.94
38366242--38366270	14	2.1	14	100	0	58	37	20	0	41	1.53
38371451--38371542	25	3.7	25	73	11	89	35	19	26	18	1.95
38371444--38371563	50	2.4	50	79	8	145	37	18	23	20	1.94
38376393--38376459	28	2.3	29	79	5	73	38	20	0	40	1.53
38377582--38377635	18	2.9	18	86	2	72	40	46	1	11	1.50
38386072--38386111	13	2.9	15	79	20	52	0	27	0	72	0.85
38386125--38386168	20	2.2	20	88	8	63	11	11	4	72	1.25
38386184--38386363	5	35.8	5	97	1	342	60	0	0	40	0.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196