genome.fa.s25.2.7.7.80.10.50.1000.154.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D12
Parameters: 2 7 7 80 10 50 1000
Length:  58873029

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   

This is table  154  of  196  ( 23409 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45378810--45378852	13	3.2	14	81	18	56	81	4	11	2	0.93
45379539--45379902	17	20.3	17	69	19	154	32	13	11	42	1.80
45379538--45379903	36	10.2	35	70	17	202	33	13	11	42	1.80
45379538--45379903	18	20.3	18	68	15	170	33	13	11	42	1.80
45380517--45380596	25	3.2	25	74	0	61	30	18	26	25	1.98
45380670--45380717	23	2.1	22	85	14	62	33	20	27	18	1.96
45380636--45380753	25	4.8	24	75	15	91	37	19	22	20	1.94
45380709--45380769	26	2.3	26	85	0	86	42	21	19	16	1.89
45391491--45391599	23	4.7	23	84	4	148	31	23	20	24	1.98
45391491--45391599	46	2.4	46	93	0	182	31	23	20	24	1.98
45395359--45395429	35	1.9	35	83	11	88	33	2	1	61	1.19
45395406--45395447	12	3.5	12	84	12	59	35	9	0	54	1.33
45395747--45395781	18	2.1	17	89	10	54	42	11	2	42	1.55
45397627--45397668	9	4.9	9	85	2	52	83	0	0	16	0.65
45397627--45397665	8	4.8	8	81	6	51	84	0	0	15	0.62
45399081--45399190	58	1.9	58	88	0	166	24	24	18	32	1.97
45399166--45399227	29	2.1	29	88	8	90	22	30	25	20	1.98
45399615--45399776	45	3.6	45	78	7	159	25	19	21	33	1.96
45399848--45400109	44	6.2	44	77	9	235	27	24	19	28	1.99
45399871--45400029	82	1.9	82	90	0	255	26	25	20	27	1.99
45399873--45400110	126	1.9	126	94	0	422	26	24	20	28	1.99
45400127--45400613	88	5.5	88	90	1	746	18	24	28	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45400138--45400613	175	2.7	176	90	1	751	18	23	28	28	1.98
45400127--45400613	263	1.9	263	91	1	798	18	24	28	28	1.98
45400549--45400670	57	2.1	57	89	3	183	16	24	27	31	1.96
45408704--45408739	17	2.1	17	89	0	54	16	16	22	44	1.86
45409182--45409228	19	2.5	19	86	6	60	27	19	8	44	1.79
45412059--45412100	7	6.0	7	81	18	52	69	0	16	14	1.20
45412059--45412100	21	2.0	21	86	9	59	69	0	16	14	1.20
45413376--45414186	44	18.4	44	82	6	845	31	14	23	31	1.94
45415137--45415178	20	2.1	20	86	0	57	9	0	11	78	0.96
45415543--45415568	12	2.2	12	100	0	52	15	7	7	69	1.35
45423029--45423333	106	3.0	102	86	6	406	27	0	14	57	1.40
45423584--45423636	21	2.5	22	78	3	54	32	5	7	54	1.52
45425807--45425910	48	2.2	47	87	3	145	48	8	11	31	1.70
45430920--45430984	21	3.1	21	71	8	60	40	18	24	16	1.91
45430899--45431028	42	3.1	42	80	4	136	45	19	18	16	1.86
45432392--45432427	11	3.4	11	92	3	56	69	2	0	27	1.02
45432462--45432500	17	2.2	18	86	4	53	61	15	0	23	1.33
45432449--45432497	19	2.5	20	78	18	59	63	18	0	18	1.32
45432390--45432594	113	1.8	114	88	3	315	60	12	0	25	1.39
45432390--45432647	113	2.3	108	82	8	299	60	12	1	25	1.38
45434607--45434639	17	1.9	17	100	0	66	48	0	9	42	1.35
45439262--45439595	54	6.2	53	80	4	348	20	18	19	41	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45439260--45439595	27	12.5	27	78	8	283	20	19	19	40	1.91
45443092--45443148	19	3.3	19	68	27	63	50	14	10	24	1.73
45443089--45443153	32	2.0	32	100	0	130	46	15	12	26	1.81
45443457--45443595	72	1.9	72	92	0	233	34	24	10	30	1.88
45443882--45444163	104	2.7	104	78	6	268	22	29	21	25	1.99
45444183--45444218	13	2.8	13	100	0	72	25	41	27	5	1.77
45444784--45444821	12	3.2	12	100	0	76	68	0	15	15	1.22
45444784--45444821	18	2.1	18	100	0	76	68	0	15	15	1.22
45452447--45452539	12	7.8	12	69	25	65	70	3	21	4	1.18
45460988--45461041	25	2.3	25	75	18	62	53	7	3	35	1.47
45466058--45466092	18	1.9	18	88	0	52	31	22	20	25	1.98
45466395--45466459	34	1.9	34	84	6	87	32	13	13	40	1.85
45473547--45473584	19	2.0	19	94	0	67	21	7	15	55	1.66
45476049--45476082	17	1.9	18	88	5	52	11	5	23	58	1.55
45486510--45486547	19	1.9	21	89	10	62	39	0	5	55	1.23
45486510--45486561	19	2.8	19	81	18	58	36	0	3	59	1.16
45486630--45486674	21	2.1	21	84	15	58	46	0	4	48	1.22
45496197--45496707	47	10.7	47	93	2	817	33	8	29	28	1.87
45496218--45496707	96	5.1	96	92	3	812	33	8	29	28	1.87
45496197--45496707	143	3.6	143	93	2	839	33	8	29	28	1.87
45500215--45500244	2	15.0	2	100	0	60	50	0	0	50	1.00
45502757--45502870	43	2.7	43	94	0	192	28	15	23	32	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45504832--45504900	31	2.3	31	87	12	108	39	8	13	39	1.75
45504835--45504907	29	2.5	28	84	8	76	39	9	10	39	1.73
45507810--45507878	11	6.5	11	75	11	56	57	0	5	36	1.22
45507899--45507985	29	2.9	29	84	6	95	31	4	1	63	1.22
45507938--45508030	20	4.8	19	74	10	80	33	4	1	61	1.23
45507899--45507990	30	3.1	28	81	10	78	29	4	1	65	1.19
45507893--45507991	10	10.0	10	65	14	53	30	4	1	64	1.18
45507979--45508031	18	2.8	20	83	13	58	32	3	0	64	1.12
45512175--45512233	30	2.0	30	96	0	109	32	32	0	35	1.58
45512267--45512331	31	2.1	31	100	0	130	33	0	0	66	0.92
45513532--45513606	25	3.2	25	78	18	106	45	16	8	30	1.75
45513549--45513617	18	3.3	18	70	30	57	44	14	5	34	1.69
45513553--45513621	20	3.2	20	77	18	84	43	14	5	36	1.70
45513532--45513621	45	2.0	45	100	0	180	44	15	6	33	1.73
45513973--45514076	41	2.5	41	85	0	136	29	23	20	26	1.98
45517514--45517782	30	8.7	30	84	11	355	45	26	0	27	1.57
45517535--45517579	24	1.9	23	86	4	63	46	24	0	28	1.53
45517600--45517689	29	3.3	24	73	24	65	46	24	0	28	1.53
45517593--45517774	59	2.9	65	86	6	252	44	26	0	28	1.59
45517514--45517788	94	2.9	94	92	3	453	45	26	0	27	1.57
45518823--45519099	123	2.2	123	94	1	493	33	20	15	30	1.94
45530018--45530044	13	2.1	13	100	0	54	48	0	22	29	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45531447--45531488	22	2.0	21	85	4	57	42	2	0	54	1.13
45536033--45536188	30	5.2	30	93	0	267	35	9	1	52	1.45
45536212--45536379	58	2.9	59	80	10	184	13	48	3	33	1.60
45536281--45536370	21	4.4	21	62	27	50	10	53	4	32	1.54
45537719--45537767	23	2.1	23	85	14	66	51	8	0	40	1.32
45544729--45544787	26	2.3	26	93	0	100	42	10	13	33	1.78
45546868--45546966	27	3.6	27	70	20	96	51	21	14	13	1.75
45547377--45547407	14	2.2	14	94	0	53	32	19	9	38	1.84
45551003--45551047	20	2.3	20	80	3	56	46	17	2	33	1.61
45559091--45559119	12	2.4	12	100	0	58	0	13	0	86	0.58
45559933--45559996	22	3.0	20	72	20	58	43	7	0	48	1.32
45559933--45560003	21	3.2	21	71	26	58	45	7	0	47	1.30
45566187--45566212	13	2.0	13	100	0	52	46	23	7	23	1.78
45566679--45566879	3	68.0	3	73	7	144	58	4	3	32	1.38
45574185--45574237	21	2.5	21	90	0	79	18	11	24	45	1.82
45574185--45574247	21	3.0	21	86	4	65	22	12	22	42	1.87
45591571--45591646	38	2.0	38	100	0	152	36	7	13	42	1.73
45599461--45599501	21	2.0	21	90	0	64	14	21	19	43	1.87
45606075--45606103	2	14.5	2	100	0	58	0	48	0	51	1.00
45610547--45610580	4	8.5	4	100	0	68	26	0	23	50	1.50
45615864--45616041	88	2.0	86	84	2	230	34	21	10	33	1.87
45616044--45616095	9	5.5	10	77	8	56	71	0	1	26	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45616303--45616394	30	3.1	30	73	7	91	35	2	2	59	1.21
45616303--45616394	29	3.1	29	74	10	89	35	2	2	59	1.21
45616369--45616419	17	3.0	17	73	18	52	39	1	0	58	1.09
45616443--45616654	88	2.4	88	83	5	250	30	8	23	37	1.85
45619599--45619640	2	21.0	2	100	0	84	0	50	0	50	1.00
45621150--45621332	60	3.1	60	76	7	185	40	20	15	22	1.90
45630372--45630424	19	2.8	19	81	13	56	58	0	0	41	0.98
45637878--45637907	15	2.1	15	93	6	53	46	0	6	46	1.29
45639261--45639290	14	2.1	14	100	0	60	6	16	43	33	1.74
45644375--45644404	14	2.1	14	100	0	60	6	16	43	33	1.74

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196