genome.fa.s25.2.7.7.80.10.50.1000.54.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D12
Parameters: 2 7 7 80 10 50 1000
Length:  58873029

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   

This is table  54  of  196  ( 23409 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15088512--15089049	9	62.7	9	68	17	215	32	2	19	46	1.62
15088925--15089083	21	7.6	20	75	16	92	34	3	15	47	1.61
15089064--15089089	12	2.2	12	100	0	52	46	7	7	38	1.61
15089090--15089311	61	3.7	61	82	8	258	48	5	4	40	1.49
15089171--15089204	16	2.1	16	100	0	68	47	5	0	47	1.26
15089201--15089228	13	2.2	13	100	0	56	46	7	7	39	1.59
15089136--15089250	30	3.8	30	71	15	110	49	6	6	37	1.55
15089525--15089564	21	1.9	21	94	0	71	20	15	25	40	1.90
15091667--15091712	7	6.6	7	84	0	56	26	50	0	23	1.50
15091825--15091869	7	6.4	7	81	0	54	33	44	2	20	1.63
15091817--15091856	21	1.9	21	85	10	55	30	45	0	25	1.54
15091825--15091869	14	3.2	14	93	0	72	33	44	2	20	1.63
15091850--15092000	81	1.8	80	86	8	214	43	26	1	29	1.63
15092088--15092120	14	2.3	15	94	5	59	36	33	0	30	1.58
15092610--15092688	41	1.9	41	84	0	104	29	29	18	22	1.98
15094726--15094763	15	2.7	15	84	8	53	63	0	7	28	1.23
15094892--15094920	13	2.2	13	100	0	58	68	0	0	31	0.89
15096594--15097152	50	11.2	50	70	5	322	24	19	22	34	1.97
15096788--15097152	199	1.8	199	87	0	550	24	19	21	34	1.96
15096594--15097160	100	5.7	100	79	4	552	23	19	21	34	1.97
15097020--15097181	50	3.2	50	76	8	159	28	20	21	29	1.98
15097245--15097406	44	3.5	44	67	19	121	29	20	17	32	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15097228--15097426	98	2.0	98	96	0	362	27	21	17	33	1.96
15097377--15097470	44	2.1	44	84	0	125	24	23	21	30	1.99
15098887--15098927	7	6.0	7	94	5	75	14	14	0	70	1.16
15098887--15098927	13	3.0	14	92	7	75	14	14	0	70	1.16
15098887--15098926	20	2.0	20	100	0	80	15	15	0	70	1.18
15104769--15104800	16	2.0	16	93	0	55	65	0	6	28	1.16
15104930--15104958	13	2.2	13	100	0	58	68	0	0	31	0.89
15105100--15105136	3	12.3	3	100	0	74	67	0	0	32	0.91
15107637--15107669	13	2.3	15	90	10	52	30	0	12	57	1.35
15111476--15111718	50	4.8	50	80	3	256	22	29	20	27	1.99
15114401--15114437	16	2.3	16	86	13	58	59	0	0	40	0.97
15114477--15114524	15	2.9	16	77	17	53	56	2	0	41	1.11
15114582--15114643	29	2.1	29	82	8	72	33	14	4	46	1.66
15122854--15122884	3	10.3	3	100	0	62	0	32	0	67	0.91
15123059--15123148	10	9.7	9	73	16	60	65	0	2	32	1.05
15123057--15123120	28	2.3	27	82	12	69	62	0	3	34	1.11
15123071--15123128	19	3.2	18	78	7	64	63	0	1	34	1.04
15123055--15123149	18	5.6	18	71	25	66	64	0	2	33	1.06
15123159--15123212	9	5.9	9	73	4	54	64	1	1	31	1.14
15123426--15123503	10	8.6	9	74	17	54	32	3	0	64	1.12
15123426--15123479	18	3.1	17	79	12	56	31	3	0	64	1.11
15123455--15123514	19	3.2	19	83	6	79	30	5	0	65	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15123417--15123513	28	3.5	28	80	7	108	34	4	0	61	1.15
15123455--15123525	18	3.7	20	81	9	85	28	5	0	66	1.14
15123455--15123526	20	3.7	20	76	10	78	29	5	0	65	1.15
15125036--15125087	22	2.2	23	83	16	63	48	0	1	50	1.12
15125728--15125755	14	2.0	14	100	0	56	64	7	0	28	1.20
15128586--15128650	33	2.0	33	96	0	121	30	26	9	33	1.88
15131702--15131749	21	2.3	22	79	13	57	35	0	2	62	1.07
15131829--15131881	21	2.5	21	81	0	61	28	3	33	33	1.75
15153342--15153490	25	6.0	25	70	12	101	20	25	19	34	1.96
15153343--15153479	49	2.8	50	83	3	161	20	26	18	34	1.96
15154283--15154439	80	2.1	73	84	13	203	26	7	21	44	1.79
15154300--15154459	80	2.0	80	98	0	311	25	7	23	44	1.79
15155334--15155370	11	3.3	11	92	3	56	51	2	0	45	1.15
15155940--15155993	27	2.0	27	92	0	90	11	33	27	27	1.91
15156852--15156976	54	2.3	54	100	0	250	27	20	8	44	1.80
15156905--15156931	14	1.9	14	100	0	54	22	22	11	44	1.84
15158645--15158694	20	2.6	20	84	12	61	24	30	0	46	1.53
15158666--15158751	42	2.0	42	88	0	127	24	25	4	45	1.72
15161335--15161379	5	9.6	5	79	20	53	0	20	0	80	0.72
15161337--15161377	8	4.9	8	85	11	55	0	17	0	82	0.66
15161340--15161377	13	2.9	13	88	11	60	0	15	0	84	0.63
15161335--15161379	18	2.4	19	85	14	67	0	20	0	80	0.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15161344--15161379	9	4.1	9	89	3	56	0	16	0	83	0.65
15161437--15161468	3	10.7	3	100	0	64	34	0	0	65	0.93
15166709--15166786	27	2.9	27	73	3	77	39	19	21	19	1.92
15168292--15168460	27	6.3	27	82	6	200	40	23	15	20	1.91
15168292--15168446	53	2.9	53	82	5	197	41	21	16	20	1.90
15168298--15168451	79	1.9	80	90	1	247	40	21	17	20	1.91
15168850--15168908	29	1.9	31	86	10	86	32	15	11	40	1.83
15181589--15181655	28	2.4	28	80	12	75	44	1	1	52	1.19
15181589--15181656	29	2.4	29	76	14	70	45	1	1	51	1.19
15181915--15182223	102	3.0	102	95	2	557	38	10	20	31	1.86
15188766--15188863	45	2.2	45	94	3	171	31	10	29	28	1.90
15188980--15189014	16	2.2	16	89	0	52	34	0	8	57	1.29
15189356--15189385	6	5.0	6	91	0	51	63	0	36	0	0.95
15190048--15190109	28	2.1	30	82	11	76	27	4	12	54	1.58
15201523--15201726	75	2.7	75	82	0	219	46	19	4	30	1.69
15208059--15208170	50	2.2	50	82	0	134	26	14	22	36	1.92
15212707--15212844	43	3.3	43	77	8	138	31	15	26	27	1.96
15216793--15216860	29	2.3	29	85	5	93	27	30	13	27	1.94
15224907--15224974	29	2.3	29	85	5	93	27	30	13	27	1.94
15225076--15225154	29	2.7	30	82	13	110	29	30	15	25	1.96
15224797--15225148	174	2.0	173	88	2	528	31	24	13	30	1.94
15229570--15229614	23	2.0	23	82	8	56	33	4	11	51	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15229656--15229686	2	15.5	2	100	0	62	0	0	48	51	1.00
15230204--15230386	42	4.4	41	86	4	242	28	19	21	29	1.98
15230225--15230429	42	4.9	42	84	4	231	30	19	21	28	1.98
15230204--15230429	83	2.7	83	84	6	264	30	19	21	28	1.98
15237148--15237176	12	2.4	12	100	0	58	31	24	0	44	1.54
15240235--15240296	10	5.9	10	74	10	52	33	32	3	30	1.74
15240235--15240297	21	3.0	21	88	2	90	33	33	3	30	1.74
15243815--15243903	28	3.2	27	78	13	83	38	17	23	20	1.93
15251132--15251170	11	3.5	11	82	10	53	46	5	0	48	1.24
15252010--15252043	17	1.9	18	94	5	61	38	32	23	5	1.79
15270135--15270168	18	1.9	17	94	5	59	50	0	8	41	1.34
15271422--15271448	2	13.5	2	100	0	54	51	0	0	48	1.00
15273831--15273915	35	2.5	33	83	12	93	69	2	3	24	1.16
15274447--15274487	18	2.1	20	86	13	59	34	14	0	51	1.43
15278273--15278310	20	1.9	20	88	0	58	21	28	31	18	1.97
15278297--15278353	21	2.7	21	84	13	80	17	24	42	15	1.88
15279465--15279495	16	2.0	16	93	6	55	58	9	0	32	1.31
15283822--15283888	25	2.7	25	90	0	98	28	20	22	28	1.99
15291276--15291561	154	1.9	154	85	0	401	41	16	18	23	1.90
15293473--15293502	12	2.5	12	94	0	51	13	30	33	23	1.93
15306021--15306046	13	2.0	13	100	0	52	38	0	30	30	1.58
15310569--15310629	28	2.2	28	87	0	86	21	22	16	39	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15327569--15327627	29	2.0	29	96	0	109	27	11	13	47	1.78
15331197--15331223	5	5.4	5	100	0	54	18	0	0	81	0.69
15338807--15338854	24	2.0	24	100	0	96	33	4	37	25	1.75
15350451--15350563	59	1.9	60	85	3	156	38	7	16	38	1.76
15351992--15352019	4	7.0	4	100	0	56	25	0	0	75	0.81
15359989--15360027	18	2.2	17	86	13	53	33	0	20	46	1.51
15360253--15360328	23	3.3	23	88	0	116	25	21	23	30	1.99
15361679--15361727	25	2.0	24	88	8	71	18	18	30	32	1.95
15362293--15362328	17	2.1	17	94	0	63	22	19	5	52	1.66
15382579--15382756	50	3.6	50	80	3	155	27	22	28	21	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196