genome.fa.s25.2.7.7.80.10.50.1000.124.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D12
Parameters: 2 7 7 80 10 50 1000
Length:  58873029

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   

This is table  124  of  196  ( 23409 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37325107--37325142	16	2.2	16	90	0	54	44	0	0	55	0.99
37327281--37327341	17	3.4	17	72	12	59	52	13	1	32	1.50
37327272--37327351	37	2.2	37	93	0	133	50	13	2	33	1.56
37327272--37327326	17	3.0	18	70	15	58	47	14	1	36	1.55
37327274--37327363	37	2.4	37	88	3	119	51	14	2	32	1.55
37336860--37336895	18	2.1	18	89	5	56	5	30	2	61	1.33
37339493--37339602	42	2.6	43	81	4	134	27	19	23	30	1.98
37339440--37339611	43	4.0	43	71	15	149	27	18	23	30	1.97
37340939--37342216	43	30.0	43	75	7	632	18	34	30	16	1.93
37340939--37342216	85	15.0	85	80	4	1254	18	34	30	16	1.93
37342147--37342212	18	3.3	18	66	22	51	16	36	37	9	1.81
37342328--37342393	24	2.8	24	88	0	87	22	34	34	7	1.83
37342609--37342943	42	7.9	42	76	8	256	21	33	25	19	1.97
37342658--37342939	85	3.3	84	78	6	264	22	34	24	18	1.96
37347937--37347995	14	4.1	14	84	2	73	20	3	33	42	1.69
37347937--37347995	7	8.3	7	80	1	55	20	3	33	42	1.69
37347940--37347995	28	2.0	28	89	0	85	19	3	33	42	1.69
37347943--37348008	7	9.4	7	80	6	53	22	4	30	42	1.74
37348044--37348201	7	22.9	7	77	2	104	14	20	44	19	1.86
37348023--37348112	21	4.3	21	82	0	90	18	23	40	17	1.92
37348131--37348216	27	3.1	27	76	3	82	15	15	47	22	1.81
37348044--37348202	41	3.9	41	80	4	133	14	20	44	20	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37348227--37348277	20	2.5	20	93	0	84	7	9	43	39	1.67
37348273--37348317	21	2.1	21	100	0	90	22	22	42	13	1.88
37348281--37348338	7	8.3	7	78	0	62	17	24	44	13	1.85
37348277--37348338	21	3.0	21	87	0	79	19	24	41	14	1.88
37348335--37348404	7	10.0	7	78	6	61	11	2	44	41	1.55
37348328--37348383	14	4.0	15	75	13	57	10	5	46	37	1.62
37348351--37348405	21	2.6	21	85	0	74	9	3	47	40	1.53
37349103--37349164	15	4.1	15	75	19	65	22	0	1	75	0.88
37349103--37349144	5	8.6	5	85	15	61	19	0	0	80	0.70
37367220--37367899	85	8.0	84	77	5	392	18	33	31	16	1.94
37367200--37367896	128	5.4	126	77	6	555	18	33	30	16	1.94
37367200--37367888	43	16.2	42	77	6	489	18	33	30	16	1.94
37373165--37373499	42	7.9	42	73	9	261	20	32	28	18	1.96
37373201--37373499	85	3.5	84	79	9	286	20	32	28	18	1.96
37377325--37377486	85	1.9	84	85	6	220	21	33	28	16	1.95
37377439--37377545	43	2.5	42	75	8	108	15	31	31	20	1.94
37377285--37377605	127	2.5	128	83	5	384	19	33	30	17	1.94
37377466--37377549	43	2.0	43	85	0	114	16	28	33	21	1.95
37377285--37377592	42	7.3	42	75	8	216	18	33	30	17	1.94
37377896--37378188	42	6.9	42	74	10	249	20	33	27	18	1.96
37377905--37378126	84	2.6	85	86	8	310	18	34	28	18	1.95
37377905--37378173	85	3.2	83	79	8	294	20	33	27	18	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37379345--37379413	36	1.9	36	93	0	120	46	14	11	27	1.79
37379342--37379405	17	3.6	17	72	15	58	46	14	10	28	1.77
37385053--37385729	43	15.9	42	77	4	460	18	33	31	16	1.93
37385053--37385729	85	7.9	85	76	7	351	18	33	31	16	1.93
37385056--37385601	128	4.3	128	76	6	403	17	34	30	16	1.93
37385064--37385730	298	2.2	297	85	4	880	18	34	30	16	1.93
37389959--37390000	21	2.0	22	90	4	68	30	4	26	38	1.77
37392259--37392300	6	6.8	6	81	13	50	21	2	0	76	0.90
37400001--37400041	19	2.2	19	100	0	82	41	4	7	46	1.53
37405898--37405927	14	2.1	14	93	0	51	50	3	6	40	1.45
37407503--37407583	36	2.2	36	82	0	99	33	25	22	18	1.97
37416214--37416398	101	1.8	102	91	3	311	24	17	27	30	1.97
37416212--37416396	51	3.6	51	83	3	214	24	17	27	30	1.97
37416320--37416400	26	3.2	26	62	28	64	23	14	28	33	1.94
37416407--37416495	45	2.0	45	86	0	124	25	17	22	33	1.96
37417961--37417996	13	2.8	13	95	0	63	41	0	25	33	1.55
37430397--37430450	27	2.0	27	100	0	108	59	14	14	11	1.62
37434270--37434300	2	15.5	2	100	0	62	0	48	0	51	1.00
37434937--37434974	9	4.3	9	80	6	51	63	0	2	34	1.09
37435165--37435288	65	1.9	65	83	6	162	24	16	8	50	1.73
37435822--37435866	20	2.2	22	80	15	60	28	2	2	66	1.15
37437672--37437707	16	2.2	16	90	0	54	36	2	0	61	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37447447--37447482	16	2.2	16	90	0	54	36	2	0	61	1.11
37456885--37457013	61	2.2	58	83	6	152	44	0	4	50	1.28
37458738--37458782	23	2.0	22	91	4	72	40	17	4	37	1.70
37458735--37458807	19	3.6	19	84	12	92	41	15	6	36	1.73
37458761--37458811	19	2.7	19	96	0	93	37	15	9	37	1.81
37459355--37459560	44	4.8	44	74	9	181	26	21	22	29	1.99
37459355--37459559	85	2.4	86	75	8	202	26	21	22	28	1.99
37459568--37460151	45	13.0	45	85	1	704	29	20	17	31	1.96
37459568--37460151	90	6.5	90	89	1	803	29	20	17	31	1.96
37464494--37464538	19	2.4	19	82	10	56	60	15	6	17	1.56
37465004--37465032	13	2.1	14	93	6	51	13	3	0	82	0.79
37465823--37465865	21	2.0	21	86	0	59	23	11	2	62	1.40
37465921--37465978	25	2.3	25	84	0	71	37	6	1	53	1.38
37466032--37466088	10	5.4	10	79	10	51	38	5	0	56	1.22
37469885--37469950	19	3.4	19	89	8	105	36	13	12	37	1.82
37476235--37476294	31	1.9	31	100	0	120	16	13	36	33	1.88
37481931--37482022	44	2.1	44	97	2	177	19	13	33	33	1.90
37494561--37494607	25	1.9	25	86	4	69	46	8	14	29	1.74
37504791--37504815	6	4.2	6	100	0	50	64	16	20	0	1.30
37507788--37507895	44	2.5	43	80	7	128	20	26	21	31	1.98
37508036--37508188	45	3.4	44	80	5	182	19	26	24	30	1.98
37508031--37508344	89	3.5	89	83	5	368	21	23	26	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37508508--37508545	16	2.5	15	87	8	58	36	5	18	39	1.73
37516303--37516327	12	2.1	12	100	0	50	48	24	0	28	1.52
37517434--37517460	14	1.9	14	100	0	54	14	48	7	29	1.71
37518955--37518980	10	2.6	10	100	0	52	15	19	34	30	1.93
37525983--37526070	39	2.3	39	93	0	149	35	12	19	32	1.89
37534334--37534372	17	2.2	17	86	4	51	30	2	2	64	1.21
37534347--37534381	16	2.1	17	89	5	54	37	0	0	62	0.95
37535371--37535418	21	2.2	22	85	3	62	64	0	0	35	0.94
37539917--37539956	19	2.1	18	86	9	53	45	0	0	55	0.99
37542707--37542755	3	16.3	3	100	0	98	67	0	0	32	0.91
37544104--37544509	132	3.1	132	92	0	668	25	23	18	31	1.97
37544494--37545039	46	12.1	46	86	6	652	29	27	16	26	1.97
37544601--37544669	34	2.0	34	91	0	111	34	24	18	21	1.96
37546071--37546117	21	2.2	21	84	0	58	25	36	10	27	1.89
37546200--37546251	7	7.0	7	81	16	61	13	13	0	73	1.11
37546200--37546251	23	2.3	22	90	9	79	13	13	0	73	1.11
37546209--37546252	7	5.6	8	91	8	65	11	11	0	77	1.00
37547064--37547103	17	2.3	17	86	4	53	12	2	7	77	1.07
37547078--37547148	24	3.1	23	82	10	83	8	0	9	81	0.87
37547081--37547145	34	1.9	34	87	6	96	9	0	9	81	0.87
37547082--37547148	6	11.7	6	80	9	61	7	0	8	83	0.81
37562079--37562191	58	1.9	59	82	8	142	44	17	15	23	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37565130--37565169	21	1.9	21	84	0	53	75	2	7	15	1.14
37566353--37566386	15	2.3	15	89	0	50	61	2	0	35	1.11
37572212--37572269	22	2.6	22	83	0	71	6	10	15	67	1.41
37574132--37574157	2	13.0	2	100	0	52	50	50	0	0	1.00
37577231--37577264	17	2.0	17	94	0	59	35	2	20	41	1.68
37579746--37579783	14	2.8	14	88	4	51	36	13	13	36	1.83
37585634--37585664	15	2.0	15	93	6	53	12	0	6	80	0.89
37589483--37589521	16	2.4	16	91	0	60	25	0	28	46	1.53
37591497--37591631	61	2.2	61	85	6	177	36	20	11	32	1.87
37591790--37591914	60	2.1	59	80	5	135	36	10	20	32	1.86

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196