genome.fa.s25.2.7.7.80.10.50.1000.117.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D12
Parameters: 2 7 7 80 10 50 1000
Length:  58873029

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   

This is table  117  of  196  ( 23409 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35372940--35372982	23	1.9	22	86	13	61	51	0	11	37	1.39
35376212--35376321	54	2.0	54	89	3	168	25	44	1	28	1.64
35378321--35378361	21	2.0	21	85	0	55	43	19	21	14	1.87
35380783--35380868	40	2.2	41	87	6	124	41	3	5	48	1.44
35382474--35382519	23	2.0	22	83	4	56	39	4	4	52	1.41
35385470--35385513	8	5.2	8	89	8	52	68	0	0	31	0.90
35385481--35385513	8	4.1	8	92	0	57	66	0	0	33	0.92
35385470--35385513	16	2.6	16	89	7	61	68	0	0	31	0.90
35387912--35387948	19	2.0	19	89	5	58	40	5	2	51	1.39
35390216--35390271	24	2.3	25	90	3	87	17	23	19	39	1.92
35390288--35390382	25	3.8	25	78	4	84	27	24	17	30	1.97
35393916--35393954	20	2.0	20	85	10	53	33	10	0	56	1.33
35394647--35394689	22	2.0	22	86	9	61	60	0	0	39	0.97
35397205--35397280	35	2.1	36	84	13	104	40	1	5	52	1.32
35398179--35398303	43	2.9	43	75	11	121	20	20	29	29	1.98
35401642--35401677	17	2.1	17	89	5	54	19	2	11	66	1.35
35404508--35404550	21	2.0	21	95	0	77	23	30	30	16	1.96
35406780--35406807	7	4.0	7	100	0	56	85	0	0	14	0.59
35407596--35407621	8	3.2	8	100	0	52	38	0	0	61	0.96
35407827--35407904	35	2.2	35	84	8	97	43	8	2	44	1.49
35411514--35411657	58	2.5	57	82	6	168	45	0	2	51	1.18
35411817--35411872	16	3.5	16	87	4	78	32	23	7	37	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35412767--35412803	12	3.0	12	88	4	56	35	0	0	64	0.94
35412784--35412878	19	4.8	19	76	14	75	25	3	2	69	1.14
35412721--35412871	48	3.3	45	79	12	148	29	3	1	65	1.19
35412728--35412913	55	3.6	51	79	13	170	29	2	2	65	1.20
35412728--35412902	11	16.3	10	73	15	104	29	2	2	65	1.19
35412717--35412934	7	29.7	7	68	23	96	29	3	2	64	1.23
35412717--35412916	15	14.6	14	79	13	125	29	3	2	64	1.23
35412826--35412934	51	2.1	50	80	8	121	26	1	4	66	1.21
35412808--35412931	29	4.4	30	74	18	99	25	2	4	66	1.23
35412881--35412959	40	2.0	40	80	14	92	37	0	6	55	1.25
35412934--35413008	33	2.4	31	86	6	98	52	0	4	44	1.20
35421408--35421455	22	2.0	23	84	11	62	54	2	2	41	1.24
35421467--35421705	43	5.6	43	84	3	252	22	15	29	33	1.94
35422988--35423031	21	2.0	22	86	4	63	36	4	13	45	1.64
35423221--35423265	23	2.0	23	81	0	54	22	0	15	62	1.33
35423549--35423625	37	2.1	39	83	11	99	37	6	2	53	1.41
35439819--35439865	22	2.0	23	84	15	62	53	2	2	42	1.25
35439887--35440085	42	4.7	42	80	10	187	22	16	30	31	1.96
35439915--35440069	83	1.9	83	82	8	199	21	14	29	33	1.94
35441329--35441374	21	2.2	21	84	7	58	36	6	17	39	1.76
35441342--35441384	21	2.0	21	90	0	68	34	4	13	46	1.65
35441629--35441655	12	2.2	12	100	0	54	33	14	0	51	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35448256--35448389	56	2.4	57	82	10	152	45	0	2	51	1.19
35448554--35448608	16	3.5	16	90	2	85	32	23	7	36	1.82
35449446--35449519	12	5.8	12	80	9	58	32	5	0	62	1.18
35449446--35449526	15	5.5	15	79	16	64	33	4	0	61	1.17
35449471--35449649	22	8.3	21	67	23	79	29	2	3	65	1.21
35449459--35449657	13	15.2	13	68	17	65	30	2	3	64	1.22
35449455--35449628	40	4.4	39	75	13	133	28	3	2	64	1.24
35449536--35449616	11	7.5	11	74	20	66	24	2	4	67	1.22
35449457--35449649	7	26.9	7	70	20	107	29	2	3	64	1.22
35449528--35449630	50	2.0	52	87	9	149	24	2	4	67	1.23
35449596--35449674	40	2.0	40	80	14	92	37	0	6	55	1.25
35449649--35449723	33	2.4	31	86	6	98	52	0	4	44	1.20
35453548--35453584	19	1.9	19	94	0	65	35	0	18	45	1.50
35453796--35454053	41	6.3	41	90	0	408	29	20	28	22	1.98
35453796--35454047	82	3.1	82	99	0	495	28	19	28	22	1.98
35461257--35461293	19	1.9	19	94	0	65	35	0	18	45	1.50
35461505--35461762	41	6.3	41	90	0	408	29	20	28	22	1.98
35461505--35461756	82	3.1	82	99	0	495	28	19	28	22	1.98
35467965--35468064	48	2.1	48	84	0	128	27	33	16	24	1.95
35471411--35471464	18	3.0	18	83	5	65	37	18	3	40	1.69
35475085--35475227	70	2.1	70	95	1	261	39	11	11	37	1.78
35486472--35486961	249	2.0	248	93	2	833	28	14	19	38	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35499195--35499401	40	5.2	40	86	0	270	21	28	16	33	1.95
35499272--35499372	20	5.1	20	63	9	62	21	32	16	28	1.96
35502108--35502160	24	2.2	24	83	6	63	47	5	1	45	1.37
35503181--35503321	69	2.0	69	95	0	255	36	17	10	35	1.85
35513413--35513439	3	9.0	3	100	0	54	66	0	33	0	0.92
35513937--35513979	22	2.0	22	95	4	79	39	13	9	37	1.78
35514548--35514598	13	3.8	13	75	14	59	35	21	1	41	1.65
35518979--35519056	25	3.2	25	85	1	104	14	34	29	21	1.93
35522035--35522213	99	1.8	98	87	4	272	41	12	11	34	1.79
35522201--35522269	35	2.0	35	82	0	84	34	17	8	39	1.80
35522643--35522794	41	3.7	41	91	1	234	32	23	18	25	1.97
35530668--35531008	40	8.5	40	83	3	357	25	27	22	24	2.00
35531314--35531392	29	2.7	29	86	5	106	27	32	15	24	1.95
35531374--35531603	43	5.4	43	97	2	437	26	35	14	23	1.94
35533465--35533543	37	2.1	37	90	0	122	25	31	18	24	1.98
35533661--35533701	20	2.0	21	95	4	75	34	34	0	31	1.58
35533681--35534041	47	7.7	47	98	1	681	29	30	8	30	1.88
35539200--35539324	46	2.7	45	88	2	169	31	23	9	36	1.87
35540424--35540460	10	3.5	10	86	13	56	56	0	0	43	0.99
35540426--35540469	12	3.8	12	88	11	74	54	0	0	45	0.99
35540424--35540469	22	2.1	22	100	0	92	54	0	0	45	0.99
35541825--35541970	41	3.6	41	82	0	168	36	15	27	20	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35541895--35541958	20	3.2	20	71	4	56	37	17	26	18	1.93
35547015--35547053	18	2.2	17	90	4	60	12	5	7	74	1.20
35547168--35547480	110	2.9	109	88	6	440	30	16	19	33	1.94
35550873--35550912	8	5.0	8	88	8	55	77	7	0	15	0.98
35550873--35550909	17	2.2	17	90	4	58	81	5	0	13	0.86
35550917--35550955	6	6.3	6	83	16	53	79	0	20	0	0.73
35552071--35552186	43	2.7	44	82	2	128	29	14	31	25	1.95
35553311--35554444	100	11.4	100	83	3	1214	32	23	20	23	1.98
35553311--35554910	50	32.1	50	67	8	536	32	23	20	23	1.98
35553967--35554910	450	2.1	450	93	1	1604	32	23	19	23	1.98
35553372--35554910	150	10.3	150	69	9	715	32	23	19	23	1.98
35556568--35556601	3	11.3	3	100	0	68	35	0	0	64	0.94
35556952--35556990	18	2.2	17	90	4	60	12	5	7	74	1.20
35557106--35557418	110	2.9	108	88	5	445	30	16	19	33	1.94
35557778--35557929	35	4.3	35	88	0	178	14	13	32	39	1.85
35562531--35562681	71	2.1	72	91	2	243	30	29	16	23	1.96
35562601--35562823	104	2.2	103	92	2	367	31	31	18	17	1.95
35563152--35563215	30	2.2	29	81	10	76	29	28	6	35	1.82
35563159--35563215	30	1.9	30	85	3	80	29	24	7	38	1.82
35570154--35570377	104	2.2	104	93	1	378	31	31	19	17	1.95
35570706--35570769	30	2.2	29	81	10	76	29	28	6	35	1.82
35570713--35570769	30	1.9	30	85	3	80	29	24	7	38	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35575117--35575157	17	2.4	17	84	8	57	58	0	12	29	1.34
35575153--35575217	33	1.9	33	87	9	96	47	0	21	30	1.51
35576448--35576514	35	1.9	35	93	0	116	44	4	25	25	1.72
35588244--35588281	12	3.2	12	92	0	58	34	26	23	15	1.95
35592504--35592544	21	2.0	21	90	0	64	19	29	21	29	1.98
35611321--35611505	46	4.0	46	89	0	280	28	25	9	36	1.88
35612734--35612781	17	2.9	17	90	3	71	54	18	0	27	1.44
35624435--35624497	6	10.5	6	100	0	126	15	17	49	17	1.80
35638120--35638239	62	1.9	62	98	0	231	43	15	18	22	1.88
35648714--35648794	36	2.2	36	91	0	126	33	33	18	14	1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196