genome.fa.s25.2.7.7.80.10.50.1000.58.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D12
Parameters: 2 7 7 80 10 50 1000
Length:  58873029

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   

This is table  58  of  196  ( 23409 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16304406--16304555	80	1.9	80	83	5	196	20	27	18	33	1.96
16307074--16307122	20	2.5	20	81	15	66	57	6	22	14	1.59
16310527--16310559	15	2.2	15	100	0	66	33	12	18	36	1.88
16320243--16320273	9	3.4	9	90	0	53	25	12	22	38	1.90
16321868--16321907	21	2.0	21	90	5	64	42	2	12	42	1.56
16324591--16324699	40	2.8	39	81	4	121	39	22	21	16	1.92
16324763--16324997	41	5.7	39	81	10	256	23	22	23	30	1.99
16324763--16324997	82	2.9	80	84	6	303	23	22	23	30	1.99
16325800--16325846	7	6.7	7	90	0	76	19	0	51	29	1.47
16328956--16329215	43	6.1	43	82	4	242	24	17	27	30	1.97
16328987--16329216	86	2.7	86	84	2	284	23	18	29	28	1.98
16329013--16329216	43	4.7	43	87	0	264	22	17	31	28	1.96
16329546--16329701	43	3.7	43	80	6	176	27	22	17	32	1.96
16333673--16333709	15	2.4	16	82	13	51	27	13	27	32	1.94
16341935--16341987	25	2.1	25	85	0	70	3	18	1	75	1.05
16341935--16341994	25	2.4	25	80	2	68	5	20	1	73	1.11
16342589--16342620	15	2.3	15	89	10	50	84	0	15	0	0.63
16342623--16342666	20	2.2	20	84	8	54	31	2	2	63	1.19
16342653--16342686	17	1.9	17	94	5	59	23	5	0	70	1.09
16345138--16345215	38	2.1	38	100	0	156	47	12	10	29	1.75
16345198--16345233	18	2.0	18	100	0	72	50	16	5	27	1.68
16346891--16347020	50	2.4	54	87	7	178	27	20	30	22	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16346932--16347061	50	2.6	50	82	2	154	26	23	29	20	1.99
16347331--16347367	19	1.9	19	89	10	58	54	5	24	16	1.63
16353396--16353445	21	2.4	21	83	3	57	16	24	32	28	1.96
16362635--16362666	15	2.1	15	94	0	55	12	3	0	84	0.74
16362637--16362669	8	4.2	8	92	7	50	12	6	0	81	0.85
16364805--16364837	3	11.3	3	93	6	59	69	0	0	30	0.88
16366385--16366435	27	1.9	26	84	11	68	23	9	11	54	1.66
16367193--16367223	9	3.3	9	95	4	53	19	0	0	80	0.71
16367193--16367223	10	3.2	10	90	9	55	19	0	0	80	0.71
16367203--16367335	39	3.3	39	89	4	203	33	3	0	63	1.15
16374368--16374418	23	2.2	23	79	6	59	66	1	7	23	1.28
16377898--16377948	18	3.0	17	71	5	50	68	3	0	27	1.07
16378232--16378297	8	8.6	8	73	18	52	33	4	0	62	1.16
16378236--16378295	29	2.1	29	84	9	79	31	5	0	63	1.16
16387823--16387892	25	2.8	25	91	0	113	24	22	20	32	1.97
16388539--16388582	20	2.2	20	84	8	54	59	4	15	20	1.54
16389029--16389058	16	1.9	16	93	6	53	30	0	20	50	1.49
16394831--16394884	25	2.2	25	86	0	72	24	11	46	18	1.81
16395000--16395046	24	2.1	21	84	11	58	31	4	40	23	1.74
16395019--16395070	24	2.1	24	82	10	61	34	1	40	23	1.66
16396127--16396248	27	4.5	27	83	4	156	39	18	14	27	1.90
16396435--16396484	26	1.9	26	83	0	64	22	22	20	36	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16401061--16401167	50	2.1	49	83	6	135	28	21	29	20	1.98
16401458--16401496	20	2.0	20	90	10	62	56	7	20	15	1.63
16402828--16402933	40	2.7	40	75	5	110	37	23	18	19	1.94
16403001--16403233	41	5.7	41	86	2	297	22	18	29	29	1.97
16403562--16403595	14	2.4	14	95	0	59	20	0	35	44	1.52
16403819--16403852	14	2.4	14	90	0	50	17	0	38	44	1.49
16403768--16403902	68	2.0	70	92	2	229	30	0	22	47	1.51
16408310--16408358	22	2.2	22	100	0	98	48	16	20	14	1.80
16422475--16422541	32	2.2	31	82	15	79	31	1	13	53	1.49
16427403--16427441	20	2.0	20	100	0	78	30	5	15	48	1.66
16430245--16430298	25	2.1	26	86	10	76	31	3	1	62	1.23
16434938--16434997	30	2.0	30	93	0	102	30	16	11	41	1.84
16436902--16436939	18	2.2	17	86	9	51	36	15	2	44	1.61
16443989--16444083	49	1.9	49	91	4	156	43	8	16	31	1.78
16445755--16445801	23	2.1	22	84	11	60	8	17	6	68	1.37
16445912--16445962	13	3.5	14	74	15	50	19	1	7	70	1.21
16446452--16446490	12	3.2	12	86	13	53	12	0	5	82	0.83
16446449--16446496	17	2.8	17	96	3	87	14	0	4	81	0.84
16447662--16447688	14	1.9	14	100	0	54	44	25	7	22	1.79
16449433--16449499	29	2.3	29	84	0	80	46	16	11	25	1.81
16452437--16452535	23	4.3	23	81	0	126	24	19	23	33	1.97
16452440--16452535	46	2.1	46	94	0	165	23	18	23	33	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16465249--16465724	27	17.7	27	83	1	506	43	17	19	19	1.89
16465921--16465991	26	2.7	26	95	0	124	14	25	26	33	1.94
16466059--16466151	28	3.2	28	79	7	105	25	23	20	30	1.99
16473207--16473598	27	14.6	27	79	4	382	43	15	18	21	1.88
16473207--16473616	81	5.1	81	81	4	427	43	15	18	21	1.87
16473979--16474061	30	3.0	30	81	16	99	22	24	27	25	2.00
16473997--16474053	30	1.9	30	96	0	105	24	22	26	26	2.00
16474000--16474088	33	2.8	33	86	5	94	25	24	23	25	2.00
16478126--16478212	29	3.0	29	85	5	115	28	14	14	41	1.86
16487844--16487868	5	5.0	5	100	0	50	80	0	0	20	0.72
16490616--16490672	30	1.9	30	85	0	78	17	26	31	24	1.97
16494605--16494671	20	3.3	20	72	0	71	11	32	20	34	1.90
16494608--16494686	40	2.0	40	85	5	106	12	32	20	34	1.90
16497505--16497597	36	2.6	36	85	6	120	36	2	13	47	1.56
16500409--16500486	39	2.0	39	89	0	120	46	23	2	28	1.65
16504658--16504763	43	2.5	43	78	1	115	32	26	15	26	1.95
16508193--16508264	38	1.9	38	91	5	121	59	9	12	18	1.59
16509274--16509314	13	3.1	14	82	6	50	43	7	0	48	1.30
16509297--16509326	15	1.9	16	93	6	53	56	10	0	33	1.32
16509596--16509668	37	1.9	39	81	10	89	35	1	6	56	1.35
16509657--16509687	13	2.3	14	94	5	55	61	0	6	32	1.21
16509656--16509689	14	2.4	15	85	14	54	61	0	5	32	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16520208--16520261	21	2.6	21	84	0	72	18	22	27	31	1.97
16523954--16524004	20	2.4	22	81	15	63	15	9	11	62	1.53
16525821--16525880	29	2.0	30	96	3	113	46	20	13	20	1.83
16527352--16527614	40	6.6	40	87	3	316	26	28	20	24	1.99
16534439--16534701	40	6.6	40	86	3	307	26	28	20	24	1.99
16540984--16541246	40	6.6	40	87	3	316	26	28	20	24	1.99
16555859--16555927	30	2.3	30	82	0	84	21	26	30	21	1.99
16558082--16558116	17	2.1	17	100	0	70	40	11	22	25	1.88
16560560--16560754	51	3.8	51	80	2	232	23	16	28	31	1.96
16560563--16560766	102	2.0	101	85	4	277	24	16	26	31	1.96
16564038--16564329	144	2.0	144	97	0	557	30	19	10	39	1.85
16565323--16565371	18	2.8	18	74	20	50	71	8	4	16	1.26
16577376--16577617	50	4.7	50	83	7	263	26	21	29	21	1.99
16577376--16577625	100	2.4	103	83	6	310	26	21	29	22	1.99
16584181--16584290	40	2.8	39	82	5	125	39	19	20	21	1.93
16584356--16584513	41	3.9	41	79	0	156	25	17	25	31	1.97
16584438--16584522	40	2.1	40	95	0	152	25	16	20	37	1.93
16584577--16584715	7	19.4	7	69	8	57	22	0	28	48	1.55
16586446--16586492	18	2.6	18	86	6	60	0	55	0	44	0.99
16591697--16592588	445	2.0	445	100	0	1784	23	16	19	40	1.91
16594318--16594469	43	3.6	44	80	10	138	24	14	25	35	1.93
16607778--16607816	20	1.9	21	89	5	62	64	5	7	23	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16608265--16608289	4	6.2	4	100	0	50	72	0	0	28	0.86
16609440--16609563	44	2.8	43	77	2	131	30	21	18	29	1.97
16609490--16609650	44	3.7	43	77	6	146	24	24	22	27	2.00
16609749--16610004	128	2.0	128	82	1	316	23	24	19	32	1.98
16610265--16610290	13	2.0	13	100	0	52	15	15	0	69	1.20
16610695--16610755	27	2.3	27	83	8	72	9	8	9	72	1.29
16610705--16610764	27	2.2	28	82	8	70	10	5	10	75	1.19
16615012--16615050	20	1.9	21	89	5	62	64	5	7	23	1.40
16617577--16617602	5	5.2	5	100	0	52	80	0	0	19	0.71
16618251--16618887	50	12.7	50	69	6	311	23	20	23	32	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196