genome.fa.s25.2.7.7.80.10.50.1000.99.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D12
Parameters: 2 7 7 80 10 50 1000
Length:  58873029

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   

This is table  99  of  196  ( 23409 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29402898--29402930	14	2.4	14	100	0	66	36	33	18	12	1.88
29413139--29413216	20	4.1	18	76	14	84	61	1	5	32	1.26
29413139--29413327	9	19.7	9	68	16	71	59	1	6	33	1.30
29413146--29413325	20	8.8	20	64	21	79	60	1	6	32	1.29
29414886--29414928	19	2.5	16	85	14	59	39	0	0	60	0.97
29415571--29415611	19	2.1	20	86	13	59	41	0	4	53	1.22
29415676--29415720	22	2.0	23	83	12	58	51	2	4	42	1.34
29416035--29416068	17	2.0	17	88	11	52	35	0	2	61	1.11
29418164--29418215	26	2.0	26	92	0	86	42	17	9	30	1.81
29421368--29421402	17	2.1	17	100	0	70	71	5	0	22	1.07
29421438--29421485	3	15.7	3	86	4	69	62	0	4	33	1.14
29422793--29422871	39	2.0	39	100	0	158	32	5	20	41	1.74
29423094--29423205	44	2.5	44	84	2	136	30	19	20	29	1.97
29423508--29424095	44	13.7	43	78	10	510	28	24	17	29	1.97
29423677--29423881	38	5.1	38	72	13	140	26	23	17	32	1.97
29423508--29424095	126	4.6	128	82	6	638	28	24	17	29	1.97
29423553--29424060	170	3.0	170	78	11	637	28	24	17	30	1.97
29424095--29424505	88	4.7	88	88	1	599	19	24	27	28	1.99
29425858--29425890	14	2.3	15	89	5	50	24	24	15	36	1.93
29430232--29430268	17	2.1	17	95	5	65	67	5	0	27	1.12
29435874--29436067	54	3.6	54	78	2	201	42	19	14	23	1.88
29435874--29436067	27	7.2	27	76	4	167	42	19	14	23	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29435874--29436081	81	2.6	81	81	1	238	43	18	15	23	1.87
29435857--29436095	27	8.9	27	75	5	162	41	17	16	23	1.89
29436264--29436332	26	2.7	26	83	0	84	15	24	21	37	1.93
29436983--29437023	20	2.0	20	95	0	73	41	14	19	24	1.89
29442674--29442723	18	2.6	19	81	15	59	6	26	2	66	1.26
29443597--29443796	27	7.4	27	82	2	242	43	16	16	24	1.87
29443597--29443796	81	2.5	81	86	0	276	43	16	16	24	1.87
29443597--29443819	27	8.3	27	82	3	164	43	16	16	23	1.87
29448684--29448716	13	2.5	13	95	0	57	33	21	6	39	1.78
29449013--29449048	7	5.1	7	96	0	63	58	2	0	38	1.13
29453182--29453373	51	3.8	50	80	4	206	29	25	18	27	1.98
29455862--29455900	20	2.0	20	94	0	69	48	0	2	48	1.15
29455921--29455996	33	2.3	33	84	10	95	47	18	7	26	1.76
29455998--29456036	19	2.1	19	95	0	69	43	12	10	33	1.77
29456020--29456057	14	2.7	14	91	0	58	36	18	7	36	1.80
29460097--29460184	6	14.3	6	92	7	142	84	0	1	14	0.69
29460101--29460184	1	84.0	1	68	0	51	84	0	1	14	0.68
29468929--29468997	29	2.4	29	87	4	95	34	27	10	27	1.89
29479881--29479950	27	2.7	26	84	4	88	32	25	21	20	1.97
29489183--29489278	50	1.9	50	84	0	129	47	12	10	29	1.74
29492493--29492550	26	2.2	26	87	0	80	29	27	24	18	1.98
29505412--29505591	51	3.6	50	87	3	227	31	27	15	25	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29512738--29512795	25	2.3	25	82	5	64	24	22	24	29	1.99
29517533--29517591	29	2.0	29	93	0	100	10	27	6	55	1.58
29536579--29536748	39	4.4	39	84	0	232	31	16	34	17	1.92
29543653--29543693	20	2.0	20	90	0	64	36	24	31	7	1.83
29547997--29548999	250	4.0	250	88	1	1427	38	13	15	32	1.86
29568191--29568251	20	2.8	22	73	12	63	47	19	6	26	1.74
29569033--29569293	132	2.0	132	87	5	375	33	12	11	42	1.79
29574046--29574128	18	4.6	18	81	0	85	22	18	16	42	1.89
29576598--29576710	44	2.6	42	82	8	118	17	18	19	44	1.87
29576635--29576711	22	3.6	21	75	13	77	16	22	19	41	1.90
29578727--29578766	19	2.1	19	95	0	71	62	10	7	20	1.50
29582587--29582649	30	2.1	30	90	0	99	58	12	4	23	1.53
29584484--29584636	69	2.2	69	80	8	166	12	30	13	44	1.80
29591810--29591856	7	6.7	7	95	0	85	17	0	42	40	1.49
29592205--29592671	23	21.0	22	81	7	507	25	1	25	47	1.58
29594002--29594039	20	1.9	20	84	10	51	55	7	2	34	1.43
29596525--29596591	11	5.9	12	80	18	81	41	1	31	25	1.64
29596710--29596767	26	2.2	26	78	0	62	22	22	31	24	1.99
29604427--29604757	80	4.2	80	96	0	592	23	21	28	26	1.99
29604426--29604757	40	8.3	40	81	0	405	23	21	28	26	1.99
29607766--29607989	23	9.7	23	72	0	142	45	20	13	20	1.84
29607766--29607978	46	4.6	46	78	3	178	46	19	13	21	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29607775--29607986	92	2.3	92	82	0	253	47	20	12	19	1.82
29610679--29610713	15	2.3	15	85	0	52	22	11	11	54	1.68
29613524--29613593	25	2.8	25	88	0	104	30	24	20	25	1.99
29623462--29623503	12	3.5	12	100	0	84	42	23	7	26	1.80
29624406--29624540	23	5.9	23	75	0	128	40	21	17	21	1.92
29629588--29629653	23	2.9	22	77	8	69	48	19	15	16	1.81
29631900--29632025	28	4.4	28	83	10	173	30	21	24	23	1.99
29631893--29632025	61	2.3	55	88	8	185	31	21	24	23	1.98
29632418--29632666	27	9.2	26	83	9	286	20	15	20	44	1.87
29635322--29635528	28	7.4	28	83	4	251	30	20	24	24	1.99
29635328--29635528	56	3.6	56	85	4	280	29	20	24	24	1.99
29635328--29635528	84	2.4	85	87	3	291	29	20	24	24	1.99
29635635--29635710	26	2.9	26	76	0	71	32	22	23	21	1.98
29636238--29636341	55	1.9	54	82	2	127	23	15	20	41	1.90
29635932--29636331	27	14.8	27	78	4	340	20	15	21	43	1.88
29656148--29656194	21	2.2	21	88	0	67	46	25	14	12	1.80
29661583--29661636	21	2.5	21	75	3	54	48	0	3	48	1.19
29664554--29664640	27	3.2	27	90	0	129	36	9	26	27	1.87
29683080--29683509	45	9.4	46	80	7	389	41	14	20	24	1.89
29689676--29689854	40	4.5	39	81	10	186	27	27	21	23	1.99
29689676--29689854	78	2.3	80	83	11	210	27	27	21	23	1.99
29697465--29697571	40	2.7	40	84	5	119	25	27	20	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29697511--29697692	40	4.5	41	83	10	198	26	27	22	23	2.00
29697511--29697692	81	2.3	81	82	10	205	26	27	22	23	2.00
29702391--29702483	25	3.7	25	80	0	114	31	23	21	23	1.99
29702374--29702544	50	3.4	49	76	6	137	33	21	22	23	1.97
29702466--29702544	25	3.2	25	87	1	115	34	18	25	21	1.96
29710195--29710279	25	3.4	25	81	1	98	35	20	21	23	1.96
29710182--29710293	50	2.3	49	80	6	136	32	23	21	23	1.98
29710202--29710308	50	2.1	50	81	3	117	32	23	20	23	1.98
29710281--29710328	25	2.0	24	87	4	69	37	20	20	20	1.95
29715173--29715215	20	2.2	20	91	0	68	13	25	0	60	1.34
29715530--29715653	56	2.3	52	83	8	153	24	31	18	25	1.98
29715427--29715659	50	4.6	50	77	3	153	24	26	19	28	1.99
29719214--29719300	39	2.2	39	97	0	165	26	12	19	41	1.87
29725016--29725139	45	2.8	45	82	0	140	37	17	20	23	1.94
29725001--29725503	91	5.6	88	80	6	431	40	16	19	23	1.91
29725113--29725501	45	8.6	45	83	7	450	41	15	19	22	1.90
29725113--29725503	91	4.3	91	85	2	495	41	16	19	22	1.90
29729103--29729162	31	2.0	31	83	9	79	38	15	28	18	1.91
29731578--29731623	12	3.4	14	82	11	60	4	28	0	67	1.10
29731699--29731731	13	2.8	12	86	13	50	6	18	3	72	1.18
29732604--29732637	12	2.8	13	91	8	54	23	2	5	67	1.26
29734993--29735051	27	2.2	27	87	0	82	37	20	10	32	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29745683--29745955	35	8.1	35	80	9	298	17	20	17	43	1.88
29745683--29745943	67	3.9	67	85	5	303	17	21	18	42	1.89
29749921--29749980	22	2.7	23	73	19	63	66	6	0	26	1.16
29749930--29749963	4	8.0	4	90	9	50	73	2	0	23	0.97
29753921--29753980	22	2.7	23	73	19	63	66	6	0	26	1.16
29753930--29753963	4	8.0	4	90	9	50	73	2	0	23	0.97
29757937--29757969	17	1.9	17	88	11	50	18	33	15	33	1.92
29768588--29768639	25	2.1	24	89	3	77	32	19	25	23	1.97
29769955--29770082	69	1.9	68	88	1	193	42	3	5	49	1.41
29790339--29791412	533	2.0	537	88	2	1575	30	17	18	33	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196