genome.fa.s25.2.7.7.80.10.50.1000.122.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D12
Parameters: 2 7 7 80 10 50 1000
Length:  58873029

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   

This is table  122  of  196  ( 23409 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36859114--36859162	18	2.7	18	78	15	55	38	2	6	53	1.38
36860274--36860307	15	2.3	15	89	0	50	35	0	2	61	1.11
36861190--36861228	20	2.0	20	84	0	51	43	7	12	35	1.72
36861733--36861774	22	2.0	22	90	4	68	50	0	38	11	1.40
36871410--36871611	106	1.9	106	88	2	307	35	19	14	29	1.92
36872470--36872535	28	2.4	27	79	20	84	59	1	3	36	1.22
36872471--36872529	28	2.1	28	87	12	86	61	1	3	33	1.23
36872701--36872766	3	22.3	3	96	3	125	68	31	0	0	0.90
36875706--36875938	116	2.0	117	84	6	310	39	15	9	34	1.80
36876045--36876072	14	2.0	14	100	0	56	57	14	0	28	1.38
36878918--36878949	14	2.3	14	100	0	64	68	0	12	18	1.20
36881031--36881081	21	2.5	21	79	20	63	74	7	1	15	1.13
36881448--36881477	16	1.9	16	93	6	53	56	3	20	20	1.56
36887166--36887205	20	2.0	20	85	4	55	32	7	15	45	1.74
36894435--36894797	44	7.9	45	76	9	259	34	18	18	28	1.94
36894435--36894797	95	3.9	89	77	7	255	34	18	18	28	1.94
36894435--36894864	44	9.5	44	74	10	258	34	18	17	29	1.94
36894478--36894798	95	3.4	93	78	8	271	35	17	18	29	1.93
36894613--36894798	51	3.8	51	71	12	138	35	17	15	31	1.92
36896383--36896481	4	24.8	4	74	15	80	23	8	0	68	1.15
36901150--36901174	9	2.8	9	100	0	50	68	8	0	24	1.16
36902825--36902984	44	3.6	44	77	8	128	25	25	21	27	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36902862--36902990	44	2.9	44	78	4	134	22	25	21	30	1.99
36915454--36915501	20	2.4	20	96	0	87	54	6	14	25	1.63
36916303--36916365	12	5.4	12	71	7	58	25	6	3	65	1.32
36920681--36920764	34	2.4	35	92	4	143	39	14	3	42	1.63
36922372--36922405	7	5.0	7	85	7	52	73	0	11	14	1.10
36922373--36922402	13	2.3	13	94	0	51	76	0	10	13	1.01
36923563--36924045	87	5.5	87	87	1	637	27	22	25	23	2.00
36923617--36924015	44	9.1	43	64	14	154	26	22	25	25	2.00
36923826--36924048	45	5.0	44	62	16	104	26	23	26	23	2.00
36924471--36924796	50	6.5	50	75	5	318	33	23	19	23	1.97
36924441--36924744	100	3.0	100	93	0	511	32	24	19	23	1.98
36924450--36924796	100	3.5	97	86	3	453	32	24	19	22	1.97
36926222--36926284	3	20.7	3	75	3	54	26	6	1	65	1.26
36928490--36928514	9	2.8	9	100	0	50	68	8	0	24	1.16
36929949--36929987	20	1.9	20	85	15	53	61	5	0	33	1.18
36933317--36933361	9	5.0	9	83	0	54	46	20	8	24	1.78
36935952--36935993	10	4.2	10	96	0	75	38	0	11	50	1.40
36935951--36935990	14	2.9	14	88	0	53	40	0	10	50	1.36
36940914--36940965	25	2.1	25	96	0	95	44	9	26	19	1.81
36943660--36943703	11	3.8	11	80	11	52	31	0	4	63	1.14
36945750--36945910	33	4.8	32	73	8	124	29	14	26	29	1.95
36945618--36945922	101	3.0	100	90	1	475	31	14	25	28	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36946441--36946525	27	3.1	27	93	0	134	42	25	8	23	1.82
36946441--36946525	9	9.4	9	90	0	116	42	25	8	23	1.82
36946629--36946675	18	2.6	18	86	0	67	17	2	40	40	1.61
36954566--36954603	3	12.7	3	94	0	67	65	0	2	31	1.06
36955543--36955587	21	2.0	23	83	8	58	20	17	48	13	1.80
36955543--36955594	21	2.5	22	79	14	56	17	17	51	13	1.76
36959079--36959172	30	3.1	30	90	1	143	25	24	6	43	1.78
36959089--36959166	15	5.2	15	67	11	61	25	21	7	44	1.79
36963741--36963864	30	4.1	30	93	1	203	25	24	6	43	1.78
36963751--36963858	15	7.2	15	67	12	78	25	22	7	44	1.79
36970377--36970424	14	3.3	14	75	11	51	50	31	0	18	1.48
36971357--36971411	21	2.7	20	77	5	56	38	36	3	21	1.71
36971747--36972267	267	1.9	269	83	5	662	31	21	13	33	1.93
36971750--36972357	133	4.5	133	78	8	565	31	21	14	32	1.94
36975848--36976056	46	4.6	46	93	1	332	33	15	21	29	1.94
36989944--36989969	12	2.2	12	100	0	52	30	7	0	61	1.24
36990423--36990465	13	3.3	13	80	0	50	34	2	2	60	1.22
36991255--36991325	27	2.6	29	88	6	112	40	14	0	45	1.44
36991393--36991468	27	2.8	27	82	7	100	27	28	27	15	1.96
36991511--36991624	4	26.2	4	72	22	72	66	0	33	0	0.92
36991504--36991625	24	5.2	22	76	16	95	64	0	35	0	0.94
36991539--36991593	11	5.4	11	74	22	57	65	0	34	0	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36991514--36991655	40	3.5	39	77	19	139	66	0	32	0	0.97
36991689--36991726	19	2.0	19	85	10	51	31	0	7	60	1.25
36993244--36993270	10	2.7	10	100	0	54	18	11	48	22	1.79
36996027--36996198	30	5.7	30	92	0	281	25	48	3	22	1.66
36996686--36996896	25	8.7	25	73	13	147	34	5	3	56	1.41
36996682--36996897	74	3.0	73	75	10	169	33	6	3	56	1.41
36996869--36996924	19	2.9	19	74	12	60	32	7	5	55	1.50
36997042--36997089	16	3.1	15	90	6	69	31	2	2	64	1.16
36997042--36997093	8	6.5	8	82	8	61	30	1	1	65	1.14
36998635--36998670	12	3.0	12	95	0	63	27	25	5	41	1.77
37006047--37006154	41	2.6	41	79	10	112	42	15	26	14	1.86
37006929--37007103	70	2.5	69	85	2	217	28	14	22	34	1.94
37007107--37007791	72	8.9	72	75	15	481	30	16	19	33	1.94
37007478--37007505	14	2.0	14	100	0	56	14	21	7	57	1.61
37007268--37007728	238	1.9	238	84	7	617	29	16	19	34	1.94
37007508--37007795	154	1.9	146	82	8	355	31	14	19	33	1.93
37007584--37007795	80	2.7	79	83	9	237	31	14	19	34	1.92
37007928--37008069	72	2.0	73	91	1	232	21	14	23	40	1.90
37008080--37008488	73	5.5	72	82	10	511	29	16	21	32	1.95
37008277--37008305	12	2.3	13	94	5	51	13	10	6	68	1.37
37008507--37008535	14	2.1	14	100	0	58	13	13	6	65	1.45
37008360--37009161	164	5.1	159	83	10	924	27	17	20	34	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37008542--37008989	74	6.0	72	85	5	581	28	17	21	32	1.96
37007920--37009116	462	2.6	455	87	4	1674	27	16	21	34	1.95
37008521--37009116	224	2.6	225	91	4	930	28	17	21	33	1.96
37008971--37009003	14	2.4	14	94	0	57	18	18	6	57	1.60
37008896--37009072	89	2.0	88	87	4	257	25	18	19	36	1.94
37008985--37009131	73	2.0	74	86	5	206	27	17	22	32	1.96
37009919--37010062	30	4.8	30	91	0	236	25	49	3	22	1.65
37009919--37010062	60	2.4	60	97	1	272	25	49	3	22	1.65
37010626--37010685	21	2.9	20	74	16	59	35	3	0	61	1.12
37010641--37010687	15	3.4	14	75	18	53	34	2	0	63	1.06
37010647--37010708	30	2.1	29	84	3	79	33	4	3	58	1.36
37010697--37010755	25	2.5	24	78	10	68	33	8	6	50	1.59
37010713--37010761	25	2.0	25	91	0	80	34	8	6	51	1.57
37010543--37010767	102	2.3	99	78	13	223	34	5	3	56	1.39
37010740--37010795	19	2.9	19	74	12	60	32	7	5	55	1.50
37010911--37010958	16	3.1	15	90	6	69	31	2	2	64	1.16
37010911--37010962	8	6.5	8	82	8	61	30	1	1	65	1.14
37012760--37012796	12	3.1	12	92	0	56	62	16	0	21	1.33
37012778--37012891	62	1.9	62	83	5	153	54	13	0	31	1.45
37013031--37013068	3	12.7	3	100	0	76	68	31	0	0	0.90
37013138--37013176	20	2.0	21	85	10	55	66	10	0	23	1.22
37013422--37013496	28	2.7	28	95	4	134	45	0	12	42	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37022273--37022327	28	2.0	27	82	3	65	61	0	5	32	1.19
37028041--37028130	36	2.6	33	75	15	83	41	0	0	58	0.98
37029786--37029846	31	2.0	31	90	0	95	47	4	13	34	1.64
37032524--37032554	4	7.8	4	100	0	62	25	0	25	48	1.52
37036813--37037120	161	1.9	155	88	3	463	32	13	15	37	1.87
37039401--37039440	18	2.2	18	86	0	53	27	50	0	22	1.50
37039419--37039678	57	4.7	57	76	9	270	27	46	4	21	1.71
37039541--37039650	47	2.3	48	85	3	143	27	48	3	20	1.66
37039486--37039678	104	1.9	104	87	2	289	27	44	5	22	1.74
37041780--37041955	98	1.8	97	80	3	210	29	14	27	28	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196