genome.fa.s25.2.7.7.80.10.50.1000.180.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D12
Parameters: 2 7 7 80 10 50 1000
Length:  58873029

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   

This is table  180  of  196  ( 23409 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52609976--52610018	19	2.2	20	84	12	63	32	18	0	48	1.48
52610190--52610384	45	4.3	45	75	14	186	40	20	19	20	1.92
52610183--52610341	51	3.2	49	80	11	191	40	20	18	20	1.91
52610241--52610384	39	3.4	39	78	16	144	40	20	20	18	1.92
52610185--52610384	90	2.2	84	79	14	229	41	20	19	20	1.91
52615117--52615169	17	3.1	17	86	2	70	39	18	7	33	1.79
52618053--52618112	28	2.2	27	80	19	63	28	1	1	68	1.09
52626338--52626378	3	14.3	3	80	10	50	65	2	0	31	1.05
52626339--52626377	20	2.0	20	90	10	62	64	2	0	33	1.08
52630768--52630826	30	2.0	28	90	6	91	38	0	3	57	1.15
52642586--52642660	34	2.2	35	85	7	109	53	1	1	44	1.17
52648135--52648287	76	2.0	75	85	6	202	27	33	13	26	1.93
52654508--52654532	11	2.3	11	100	0	50	44	8	0	48	1.32
52658224--52658271	25	2.0	24	87	4	69	35	22	27	14	1.93
52660930--52661017	25	3.6	24	74	20	76	39	18	22	19	1.92
52661566--52661673	47	2.2	48	85	4	137	36	31	12	19	1.90
52661566--52661699	47	2.8	47	80	4	126	32	30	14	22	1.93
52671454--52671484	15	2.1	15	93	0	53	74	16	0	9	1.07
52672580--52672649	11	6.4	11	79	11	72	22	32	0	44	1.53
52672580--52672649	33	2.1	33	86	5	97	22	32	0	44	1.53
52674485--52674527	18	2.4	18	84	0	50	20	25	9	44	1.81
52675004--52675214	114	1.8	115	86	4	309	42	5	5	46	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52678218--52678509	126	2.3	126	85	3	408	28	20	17	33	1.95
52679022--52679046	13	1.9	13	100	0	50	44	0	0	56	0.99
52681147--52681174	5	5.6	5	100	0	56	21	0	17	60	1.36
52681899--52681924	12	2.2	12	100	0	52	7	42	7	42	1.62
52701845--52701974	47	2.8	47	80	2	136	39	16	13	30	1.88
52712219--52712254	15	2.4	16	90	9	58	30	5	0	63	1.17
52716744--52716883	43	3.3	42	82	4	165	17	19	34	29	1.94
52716932--52717079	43	3.4	43	74	9	140	32	29	15	22	1.95
52717429--52717521	21	4.4	21	82	2	98	5	44	16	34	1.70
52717429--52717541	42	2.7	42	80	2	111	6	42	15	35	1.73
52717429--52717533	21	5.0	21	84	0	93	4	43	17	34	1.70
52717512--52717658	66	2.2	66	86	4	199	12	29	17	40	1.87
52717551--52717681	66	2.0	66	87	3	192	13	25	19	41	1.88
52719813--52719853	13	2.8	15	85	14	59	34	0	19	46	1.50
52719812--52719890	16	5.0	16	76	13	74	34	1	16	48	1.55
52721341--52721374	15	2.3	15	94	0	59	64	11	17	5	1.45
52721597--52721633	11	3.4	11	96	0	65	54	2	5	37	1.38
52722821--52722872	27	1.9	27	88	0	77	50	9	0	40	1.35
52722940--52722976	10	3.7	10	92	0	65	43	13	0	43	1.44
52724831--52724898	15	4.9	14	71	16	52	41	35	0	23	1.55
52724834--52724871	15	2.5	15	86	0	58	36	42	0	21	1.53
52725439--52725659	41	5.4	41	83	3	266	38	22	24	14	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52725439--52725659	82	2.7	83	87	2	313	38	22	24	14	1.92
52725977--52726013	19	2.0	19	94	5	67	27	5	16	51	1.66
52731126--52731158	15	2.1	16	88	5	50	63	0	6	30	1.18
52740858--52741495	114	5.6	114	84	4	745	26	22	24	27	2.00
52740857--52741444	227	2.6	227	85	5	796	26	22	24	26	2.00
52741825--52741857	14	2.3	15	94	5	59	30	0	33	36	1.58
52742068--52742136	7	9.6	7	71	6	57	14	0	46	39	1.45
52742081--52742136	22	2.5	22	97	0	103	12	0	48	39	1.41
52742514--52742564	20	2.5	20	87	3	66	13	0	37	49	1.43
52743509--52743920	146	2.8	144	77	6	391	25	15	23	35	1.94
52745227--52745258	15	2.1	15	100	0	64	28	6	12	53	1.62
52745781--52745813	7	4.7	7	100	0	66	27	12	0	60	1.32
52746037--52746089	18	2.8	19	83	10	65	39	1	1	56	1.21
52746240--52746402	13	12.5	13	73	8	125	40	9	3	46	1.55
52746282--52746412	27	5.0	27	70	9	99	39	10	4	45	1.60
52746296--52746385	23	3.7	23	75	16	81	38	7	5	47	1.56
52746607--52746656	16	3.4	16	73	21	63	46	18	2	34	1.60
52746572--52746656	28	2.9	28	87	8	107	44	17	3	34	1.66
52746669--52746788	28	4.1	28	70	19	100	45	15	0	38	1.51
52746605--52746847	129	1.9	125	88	5	362	44	14	1	39	1.55
52746635--52746910	129	2.1	130	84	8	350	44	15	2	38	1.58
52746894--52747318	9	48.8	9	71	14	302	45	20	1	32	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52746892--52747175	79	3.6	78	95	2	477	46	21	0	30	1.56
52752827--52752892	21	3.1	21	91	0	78	33	19	43	3	1.66
52753279--52753518	42	5.6	42	80	6	243	24	19	22	33	1.97
52753298--52753518	85	2.6	84	84	4	275	24	20	23	31	1.98
52753865--52753926	21	2.8	22	80	11	65	37	4	1	56	1.30
52766259--52766303	11	3.3	14	76	23	51	53	2	4	40	1.33
52766768--52766822	23	2.4	24	84	6	69	72	10	3	12	1.24
52766770--52766832	25	2.6	24	80	7	65	73	11	1	14	1.18
52767914--52768020	42	2.5	42	83	4	126	27	22	20	29	1.98
52768747--52768805	26	2.3	26	96	0	109	42	3	15	38	1.63
52769087--52769129	18	2.4	18	88	0	59	41	44	2	11	1.53
52770476--52770513	16	2.4	16	90	0	58	23	10	47	18	1.79
52770596--52770650	24	2.3	24	93	0	92	38	0	40	21	1.54
52770903--52770940	20	1.9	20	94	0	67	57	7	0	34	1.28
52771136--52771169	15	2.2	16	89	5	52	38	2	0	58	1.13
52771307--52771369	7	9.0	7	75	0	54	47	36	0	15	1.46
52771307--52771369	28	2.2	28	88	5	92	47	36	0	15	1.46
52771448--52771490	22	2.0	22	90	4	70	51	30	2	16	1.57
52772236--52772954	114	6.4	114	89	5	1072	24	20	19	35	1.96
52772617--52772935	101	3.0	101	85	10	403	22	22	18	36	1.95
52772236--52772952	330	2.1	335	88	4	1063	24	20	19	35	1.95
52772753--52772998	114	2.2	113	86	5	318	24	21	19	34	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52781106--52781156	7	6.9	8	81	18	58	72	0	13	13	1.12
52781109--52781158	6	7.0	7	79	20	59	72	0	14	14	1.14
52781116--52781160	15	2.9	16	93	6	76	71	0	15	13	1.15
52782593--52783490	100	9.0	100	90	0	1332	29	23	24	21	1.99
52784984--52785014	3	10.3	3	100	0	62	32	0	0	67	0.91
52793086--52793129	21	2.0	23	86	8	65	2	31	0	65	1.05
52795996--52796110	43	2.7	43	81	12	146	26	30	19	23	1.98
52825271--52825297	2	13.5	2	100	0	54	51	0	48	0	1.00
52832059--52832110	20	2.5	20	84	6	59	65	5	1	26	1.26
52832633--52832675	17	2.5	17	85	7	52	44	2	0	53	1.13
52833304--52833333	15	2.0	15	93	0	51	36	0	0	63	0.95
52844504--52844544	8	5.0	8	88	5	64	41	0	0	58	0.98
52845528--52845585	22	2.6	22	91	0	89	15	24	17	43	1.87
52849562--52849605	23	1.9	23	95	0	79	52	6	9	31	1.59
52851892--52851954	23	2.5	25	80	14	69	42	0	3	53	1.16
52851982--52852061	33	2.5	32	84	6	101	46	1	5	47	1.32
52852252--52852286	18	2.0	18	88	5	54	51	0	0	48	1.00
52875636--52875720	17	5.1	16	67	24	52	32	1	4	61	1.24
52875636--52875720	16	5.1	17	68	26	58	32	1	4	61	1.24
52887837--52887880	3	14.7	3	95	0	79	0	34	0	65	0.93
52893969--52894002	3	11.3	3	87	0	50	29	2	0	67	1.05
52895833--52895893	30	2.0	30	100	0	122	26	13	39	21	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52897861--52897928	33	2.1	33	97	0	127	29	1	30	38	1.66
52901308--52901341	9	3.8	9	88	0	50	0	23	35	41	1.55
52905206--52905272	33	2.0	33	97	0	125	46	14	17	20	1.84
52906899--52906944	19	2.5	17	80	16	56	43	2	2	52	1.25
52908055--52908092	18	2.1	18	85	9	51	21	10	15	52	1.72
52915116--52915154	6	6.5	6	93	0	51	66	5	28	0	1.12
53096793--53096828	3	12.0	3	100	0	72	0	0	66	33	0.92
53100058--53100099	6	7.3	6	89	10	70	30	0	0	69	0.89
53100061--53100095	16	2.2	16	100	0	70	31	0	0	68	0.90
53100058--53100099	22	1.9	22	100	0	84	30	0	0	69	0.89

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196