genome.fa.s25.2.7.7.80.10.50.1000.141.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D12
Parameters: 2 7 7 80 10 50 1000
Length:  58873029

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   

This is table  141  of  196  ( 23409 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41782072--41782210	56	2.4	57	89	2	181	42	3	23	30	1.71
41787356--41787383	5	5.6	5	100	0	56	39	21	0	39	1.54
41792190--41792219	14	2.1	14	93	0	51	33	0	16	50	1.46
41796312--41796358	23	1.9	26	83	12	64	48	8	10	31	1.68
41799397--41799456	27	2.2	28	82	8	70	48	20	18	13	1.81
41807227--41807650	210	2.0	211	90	2	674	33	15	20	31	1.93
41809639--41809671	6	5.5	6	96	0	57	48	3	30	18	1.63
41810903--41810938	18	2.0	18	88	0	54	25	2	19	52	1.59
41810940--41811257	55	5.8	55	79	7	295	28	7	15	48	1.72
41810926--41811248	113	2.9	110	77	8	343	28	7	15	48	1.73
41812489--41812554	28	2.2	29	79	15	73	51	3	0	45	1.16
41816692--41816726	15	2.4	14	90	4	52	42	8	0	48	1.33
41817604--41817668	25	2.5	26	80	7	78	26	21	27	24	1.99
41817804--41817883	26	3.1	26	78	5	83	36	18	27	17	1.94
41817976--41818038	25	2.6	25	82	7	76	36	20	23	19	1.95
41820193--41820240	3	16.0	3	77	0	51	56	4	0	39	1.19
41820193--41820240	12	4.0	12	86	0	60	56	4	0	39	1.19
41820962--41821001	19	2.2	19	90	4	64	15	12	0	72	1.12
41821152--41821216	22	3.0	22	75	6	62	61	4	0	33	1.16
41824937--41825018	24	3.5	24	72	11	62	35	4	3	56	1.39
41825010--41825066	24	2.4	24	77	16	64	28	7	8	56	1.56
41825729--41825763	18	2.0	17	88	5	52	17	5	17	60	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41833810--41833843	15	2.1	16	84	15	52	32	0	0	67	0.91
41833815--41833843	15	1.9	15	100	0	58	34	0	0	65	0.93
41835031--41835279	42	5.9	42	84	6	308	30	20	21	26	1.98
41835717--41835765	21	2.3	21	89	0	71	6	34	18	40	1.75
41841260--41841305	7	6.0	7	90	9	56	30	0	17	52	1.45
41841267--41841407	9	16.4	9	75	15	113	36	1	19	43	1.60
41841260--41841389	32	3.9	33	75	16	124	36	1	20	42	1.61
41841393--41841418	13	2.0	13	100	0	52	30	0	15	53	1.42
41841532--41841583	20	2.6	20	100	0	104	34	0	15	50	1.45
41841477--41841801	119	2.7	121	87	6	432	32	3	18	46	1.65
41841773--41841808	16	2.2	16	90	0	54	36	0	16	47	1.47
41841782--41841865	25	3.4	25	76	3	89	33	2	21	42	1.66
41841709--41841865	9	18.6	9	67	12	82	31	3	19	44	1.69
41841883--41841928	7	6.6	7	78	16	51	28	0	10	60	1.30
41841870--41841999	27	5.2	26	69	20	89	36	1	12	49	1.50
41841883--41841928	15	3.3	15	79	17	62	28	0	10	60	1.30
41842582--41842685	33	3.2	33	67	8	104	43	4	10	41	1.60
41842582--41842687	32	3.2	32	67	9	97	44	4	10	40	1.60
41845046--41845095	17	3.0	17	94	2	84	50	16	0	34	1.45
41845123--41845466	114	3.0	108	77	9	339	27	22	18	32	1.97
41845365--41845505	74	1.9	73	84	4	185	29	23	17	29	1.97
41845257--41845842	188	3.1	188	93	0	974	27	23	16	31	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41845640--41846165	113	4.6	113	81	4	574	28	22	18	31	1.97
41845640--41846165	227	2.3	226	80	3	574	28	22	18	31	1.97
41847837--41847875	15	2.6	16	88	8	55	61	28	0	10	1.28
41848998--41849040	3	14.3	3	95	0	77	30	0	2	67	1.03
41849167--41849252	3	29.0	3	78	2	84	32	3	4	59	1.35
41857597--41857629	17	2.0	17	88	5	50	57	9	0	33	1.30
41868442--41868521	31	2.5	31	84	8	90	48	2	13	35	1.56
41883535--41883569	15	2.4	15	90	4	54	48	0	8	42	1.33
41887471--41887504	12	2.8	12	87	12	52	23	5	0	70	1.09
41887430--41887507	20	4.0	20	72	21	76	23	6	0	70	1.10
41888384--41888442	4	15.2	4	80	19	72	76	1	0	22	0.88
41893186--41893240	23	2.4	23	87	0	74	25	14	32	27	1.95
41897063--41897097	18	1.9	18	94	0	61	31	2	8	57	1.44
41899625--41899682	29	2.1	29	83	6	75	51	3	0	44	1.18
41899643--41899690	13	3.5	14	79	20	57	56	0	0	43	0.99
41910977--41911009	17	1.9	17	93	0	57	33	3	9	54	1.47
41913522--41913564	20	2.2	20	88	8	63	58	0	0	41	0.98
41913523--41913565	18	2.4	17	85	14	52	60	0	0	39	0.97
41937695--41937789	44	2.2	44	90	3	147	44	12	18	24	1.85
41937707--41937803	44	2.2	44	85	3	124	43	13	22	20	1.87
41937810--41938041	50	4.7	50	81	3	256	28	21	30	20	1.98
41937810--41937995	100	1.9	100	90	0	300	27	20	32	19	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41939655--41939705	16	3.1	17	78	18	63	1	27	0	70	0.98
41940920--41940961	6	7.0	6	100	0	84	66	0	16	16	1.25
41955326--41955369	16	2.6	16	79	10	52	47	4	0	47	1.22
41967934--41968043	42	2.6	42	82	4	107	18	20	17	43	1.88
41968699--41968914	108	2.0	108	99	0	423	31	13	28	26	1.94
41979105--41979190	31	2.8	30	78	5	93	48	11	4	34	1.60
41979105--41979163	29	2.0	30	86	3	84	52	11	3	32	1.54
41979111--41979185	29	2.5	28	79	12	78	49	12	5	33	1.62
41985167--41985204	3	12.7	3	94	0	67	65	0	0	34	0.93
41988236--41988299	27	2.4	27	83	0	74	28	32	31	7	1.85
41988687--41988918	76	2.9	78	76	11	238	33	5	11	49	1.62
41993657--41994511	158	5.4	159	91	3	1314	29	7	8	54	1.58
41993662--41994511	317	2.7	317	92	2	1381	29	7	8	54	1.58
41994672--41994794	30	4.4	30	77	17	147	61	8	6	23	1.47
41994663--41994726	14	4.5	14	74	16	60	67	6	4	21	1.32
41994668--41994768	52	1.9	52	93	0	175	62	7	5	23	1.45
41994734--41994784	16	3.3	16	71	20	54	54	11	7	25	1.63
41994664--41994836	82	2.1	81	78	11	183	61	6	6	25	1.46
41995004--41995119	3	39.3	3	68	16	55	0	36	1	61	1.12
41995063--41995109	13	3.5	13	82	8	51	0	34	0	65	0.93
41996171--41996276	50	2.1	49	83	8	133	22	5	9	62	1.47
41996218--41996250	12	2.8	12	95	0	57	24	0	6	69	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41996377--41996498	51	2.5	47	80	10	136	63	7	9	19	1.46
41996408--41996492	17	5.1	17	68	12	59	65	7	9	17	1.43
41996429--41996963	158	3.4	158	90	1	831	54	9	7	28	1.59
42002139--42002280	76	1.9	76	86	2	205	52	11	4	30	1.59
42002510--42002550	13	3.3	13	76	13	50	2	34	0	63	1.08
42006031--42006096	32	2.1	32	100	0	132	15	12	15	57	1.65
42011118--42011163	20	2.3	20	88	0	65	34	15	15	34	1.89
42014020--42014051	16	1.9	17	93	6	57	75	3	18	3	1.08
42014952--42015007	25	2.2	25	87	0	76	17	26	21	33	1.96
42035434--42035477	9	4.9	9	94	0	79	36	31	9	22	1.86
42036636--42036669	3	11.3	3	100	0	68	0	32	0	67	0.91
42044998--42045043	22	2.1	22	88	8	67	41	4	13	41	1.63
42047771--42047832	22	2.7	23	78	9	65	62	1	1	33	1.14
42047779--42047833	21	2.5	22	85	2	67	67	1	1	29	1.11
42047806--42047853	15	3.3	14	80	8	60	58	0	4	37	1.18
42053576--42053766	95	2.0	95	97	0	364	26	18	13	41	1.87
42069341--42069530	95	2.0	94	96	1	353	26	17	13	42	1.87
42078882--42078925	22	2.2	20	84	12	54	47	11	15	25	1.79
42085253--42085324	29	2.4	29	81	4	81	26	13	13	45	1.81
42085887--42085955	29	2.3	29	85	5	84	47	15	14	21	1.81
42087674--42087706	13	2.6	13	90	4	50	51	0	3	45	1.16
42088083--42088128	19	2.3	22	85	14	64	41	2	0	56	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42098716--42098754	18	2.0	20	85	9	55	41	2	0	56	1.13
42108590--42108630	21	2.0	21	90	0	64	19	29	21	29	1.98
42118946--42118975	10	3.1	10	90	9	53	50	0	0	50	1.00
42118943--42118976	9	3.7	9	92	7	59	52	0	0	47	1.00
42125901--42125969	29	2.3	30	73	9	70	40	8	7	43	1.63
42127498--42127529	14	2.3	14	100	0	64	6	15	46	31	1.71
42132619--42132650	14	2.3	14	100	0	64	6	15	46	31	1.71
42134439--42134487	20	2.5	20	90	6	73	34	2	4	59	1.28
42141104--42141236	37	3.6	36	84	8	153	56	3	9	30	1.47
42141248--42141292	22	2.0	23	91	4	74	37	4	26	31	1.76

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196