genome.fa.s25.2.7.7.80.10.50.1000.136.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D12
Parameters: 2 7 7 80 10 50 1000
Length:  58873029

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   

This is table  136  of  196  ( 23409 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40409948--40410271	159	2.0	159	83	1	396	24	58	4	12	1.52
40410087--40410261	9	18.8	9	66	19	65	24	59	2	13	1.48
40410122--40410200	36	2.2	36	84	4	106	24	59	3	12	1.50
40410108--40410213	36	2.9	36	78	7	97	23	59	2	14	1.48
40410248--40410360	6	18.8	6	72	7	77	18	61	3	15	1.47
40410216--40410360	12	12.1	12	75	11	73	20	60	3	15	1.49
40412171--40412200	15	1.9	16	93	6	53	66	0	3	30	1.07
40412919--40412983	31	2.1	31	85	0	85	44	13	10	30	1.78
40413779--40413823	21	2.1	21	100	0	90	22	17	35	24	1.95
40419848--40419894	18	2.6	18	93	0	76	44	8	14	31	1.76
40420070--40420100	13	2.3	14	94	5	55	0	9	0	90	0.46
40423163--40423219	24	2.3	24	88	8	80	61	3	3	31	1.30
40424714--40424872	44	3.6	44	82	2	167	29	20	20	28	1.98
40424880--40425228	132	2.6	132	89	0	538	25	24	19	30	1.98
40424878--40425291	132	3.1	131	83	4	352	26	25	17	30	1.97
40437283--40437317	16	2.2	16	89	0	52	45	20	14	20	1.85
40438716--40438772	24	2.3	24	88	8	80	61	3	3	31	1.30
40438677--40438760	13	6.8	12	78	13	73	64	0	2	33	1.07
40446925--40447088	50	3.3	50	89	1	240	28	20	26	25	1.99
40446933--40447078	75	1.9	75	86	5	206	27	19	27	25	1.99
40446925--40447088	25	6.6	24	75	13	129	28	20	26	25	1.99
40446925--40447090	75	2.2	75	80	12	205	27	20	26	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40449877--40449922	21	2.2	21	88	3	67	21	0	2	76	0.90
40452268--40452378	59	1.9	58	83	5	143	50	1	11	36	1.50
40452862--40452902	21	2.0	21	95	0	73	29	12	4	53	1.58
40461093--40461184	33	2.7	33	73	9	78	27	20	14	38	1.91
40468437--40468463	8	3.4	8	100	0	54	51	11	0	37	1.37
40474331--40474458	21	6.1	21	67	8	73	41	17	21	19	1.90
40474304--40474452	42	3.6	41	79	4	138	44	16	21	17	1.87
40475730--40475757	13	2.2	13	100	0	56	46	21	7	25	1.76
40476206--40476236	14	2.3	13	94	5	53	3	22	0	74	0.96
40478325--40478563	50	4.7	50	81	5	241	28	21	26	22	1.99
40478328--40478556	100	2.2	101	83	8	268	29	21	27	21	1.99
40484217--40484268	27	1.9	27	84	7	70	36	17	1	44	1.60
40485448--40485674	42	5.5	42	85	3	257	27	22	19	29	1.98
40492213--40492269	21	2.7	21	88	0	87	24	43	15	15	1.86
40494137--40494174	16	2.4	16	86	8	51	36	0	18	44	1.50
40499718--40499758	13	3.0	13	82	10	55	34	7	17	41	1.77
40499783--40499856	31	2.3	32	84	9	89	29	5	14	50	1.66
40500258--40500325	15	4.4	15	71	18	50	41	0	5	52	1.25
40503151--40503190	19	2.0	20	86	13	57	17	5	5	72	1.21
40506775--40506870	5	19.2	5	100	0	192	39	20	0	39	1.53
40511885--40511935	13	3.9	13	86	0	75	23	9	27	39	1.86
40511885--40511935	26	2.0	26	92	0	84	23	9	27	39	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40512382--40512433	14	3.9	14	85	14	83	30	13	11	44	1.79
40512377--40512439	25	2.5	25	94	2	108	31	12	11	44	1.78
40514480--40514564	41	2.1	41	95	0	152	47	14	29	9	1.75
40514639--40514685	23	2.0	23	95	0	85	51	21	27	0	1.48
40518735--40518774	20	2.0	20	85	5	53	65	0	5	30	1.14
40520189--40520258	15	4.5	15	67	10	50	40	1	7	51	1.38
40525163--40525211	21	2.3	21	82	10	55	63	4	6	26	1.36
40525401--40525464	21	2.8	23	88	11	89	64	1	4	29	1.23
40527160--40527339	43	4.2	43	68	13	127	24	21	20	34	1.96
40527066--40527370	129	2.4	127	88	1	448	24	19	20	35	1.95
40527117--40527315	40	4.7	41	70	15	120	26	20	21	32	1.98
40527396--40527768	50	7.5	50	72	4	281	24	22	22	30	1.99
40527380--40527769	100	3.9	100	85	2	502	24	22	23	30	1.99
40527378--40527769	198	2.0	196	85	2	534	24	22	22	29	1.99
40527840--40528330	45	10.9	45	82	7	554	30	23	16	30	1.96
40527824--40528330	135	3.8	136	85	6	615	30	23	15	30	1.96
40529253--40529287	5	7.0	5	93	0	61	2	20	0	77	0.90
40533194--40533242	21	2.3	21	82	10	55	63	4	6	26	1.36
40533405--40533472	25	2.7	26	81	4	75	63	4	4	27	1.33
40533438--40533488	21	2.4	21	87	6	68	62	1	5	29	1.29
40533431--40533488	25	2.5	25	89	10	88	62	1	5	31	1.27
40535331--40535380	24	2.2	23	85	7	66	44	0	6	50	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40536466--40536528	32	1.9	34	83	6	85	52	4	3	39	1.38
40536591--40536652	30	2.1	29	82	11	72	50	3	0	46	1.17
40536821--40536875	26	2.1	26	86	6	76	41	12	5	40	1.66
40536821--40536875	13	4.2	13	76	0	56	41	12	5	40	1.66
40537195--40537510	138	2.3	138	92	1	526	28	10	8	52	1.65
40537508--40537534	13	2.1	13	100	0	54	40	0	0	59	0.98
40539124--40539879	381	2.0	375	92	2	1244	21	20	28	28	1.98
40540816--40540853	19	2.1	18	90	9	60	23	0	2	73	0.95
40540817--40540889	18	3.9	19	75	19	64	24	2	5	67	1.26
40541852--40541922	27	2.6	28	91	4	119	43	9	0	46	1.37
40541989--40542056	27	2.5	27	90	0	109	27	29	26	16	1.97
40542099--40542252	4	37.0	4	76	15	136	71	0	27	0	0.91
40542146--40542290	43	3.5	44	80	15	198	71	0	28	0	0.87
40542118--40542285	62	2.8	61	77	16	152	70	0	28	0	0.91
40542102--40542285	82	2.3	79	87	9	254	71	0	28	0	0.91
40542166--40542271	18	5.3	18	66	24	61	70	0	29	0	0.87
40542115--40542304	30	6.6	29	66	19	67	70	0	28	0	0.91
40543265--40543779	160	3.2	160	71	14	518	50	7	12	29	1.68
40543090--40543873	159	4.9	157	70	14	541	50	7	12	30	1.68
40543090--40543873	319	2.5	320	93	1	1313	50	7	12	30	1.68
40548355--40548410	3	19.7	3	80	10	55	35	5	0	58	1.21
40549398--40549707	106	2.9	104	79	5	345	28	18	20	32	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40551846--40551884	20	2.0	21	85	10	55	66	10	0	23	1.22
40552018--40552118	27	3.7	25	86	5	103	17	29	27	24	1.98
40552175--40552248	28	2.7	27	87	8	114	48	0	6	44	1.29
40553794--40553860	29	2.3	29	86	0	98	31	20	19	28	1.97
40556575--40556629	19	2.8	20	77	20	62	69	1	7	21	1.23
40557749--40557802	11	5.0	10	76	14	54	22	29	0	48	1.51
40557752--40557810	11	5.4	11	75	13	50	22	32	0	45	1.52
40558986--40559017	7	4.6	7	96	0	55	28	9	15	46	1.77
40559510--40559567	30	1.9	30	85	0	80	32	41	12	13	1.82
40559659--40559701	18	2.4	18	84	0	50	18	25	9	46	1.79
40560435--40561548	372	3.0	372	92	1	1856	27	24	20	27	1.99
40563971--40564263	125	2.3	126	88	2	430	26	19	18	35	1.95
40564301--40564592	96	3.1	95	83	4	345	38	15	3	42	1.64
40564644--40564698	27	1.9	30	89	10	89	50	38	0	10	1.37
40564884--40564933	23	2.2	23	88	0	73	50	10	2	38	1.48
40565278--40565367	39	2.2	41	90	3	139	53	4	2	40	1.33
40583027--40583345	135	2.3	137	88	6	463	45	15	7	31	1.74
40591232--40591287	21	2.7	21	85	0	76	25	10	35	28	1.89
40593113--40593151	4	9.8	4	94	0	69	23	0	25	51	1.49
40593427--40593453	14	1.9	14	100	0	54	37	0	11	51	1.37
40593527--40593588	3	20.7	3	79	0	70	59	4	3	32	1.34
40599384--40599417	7	4.9	7	100	0	68	41	0	14	44	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40606085--40606110	7	3.7	7	100	0	52	84	0	0	15	0.62
40609360--40609400	19	2.3	18	87	8	57	39	7	0	53	1.29
40610774--40611257	251	1.9	246	80	8	541	37	10	16	35	1.83
40610849--40611368	251	2.1	252	79	6	547	36	10	15	36	1.82
40614053--40614098	22	2.3	19	82	14	56	30	15	15	39	1.88
40616695--40616734	2	20.5	2	94	5	73	50	0	50	0	1.00
40617779--40617840	26	2.4	26	94	0	106	64	6	4	24	1.37
40635072--40635100	12	2.5	12	94	5	51	27	17	10	44	1.81
40640111--40640246	66	2.1	66	100	0	272	24	7	27	41	1.81
40646629--40646837	105	2.0	105	93	0	355	29	27	22	21	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196