genome.fa.s25.2.7.7.80.10.50.1000.119.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D12
Parameters: 2 7 7 80 10 50 1000
Length:  58873029

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   

This is table  119  of  196  ( 23409 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35998523--35998561	18	2.2	17	86	13	53	46	20	0	33	1.51
36005333--36005366	16	2.2	16	89	5	52	14	2	0	82	0.79
36005493--36005518	11	2.4	11	100	0	52	15	0	0	84	0.62
36006176--36006220	23	2.1	20	84	12	54	22	0	8	68	1.16
36008741--36008766	4	6.5	4	100	0	52	50	23	0	26	1.50
36011867--36011911	22	2.0	23	87	8	67	51	4	8	35	1.54
36014940--36015016	24	3.2	23	73	14	75	50	19	27	2	1.60
36020440--36020469	10	3.0	10	90	0	51	43	0	0	56	0.99
36022893--36022975	31	2.7	31	90	0	121	45	13	10	30	1.77
36029363--36029404	16	2.6	16	92	0	66	42	4	21	30	1.73
36029360--36029414	16	3.4	16	87	0	56	40	5	21	32	1.76
36029576--36029627	22	2.4	22	96	0	95	44	0	5	50	1.26
36029621--36029735	58	2.0	58	84	3	151	53	5	0	40	1.23
36029748--36029793	23	2.0	23	87	8	67	58	6	0	34	1.24
36032427--36032473	23	2.0	23	95	0	85	23	8	14	53	1.69
36040776--36040921	41	3.6	41	86	1	195	19	28	21	30	1.97
36040817--36040949	41	3.2	41	80	7	128	21	27	21	30	1.98
36040776--36040949	82	2.1	83	82	5	219	21	27	20	31	1.98
36048268--36048342	31	2.4	29	79	20	80	32	28	12	28	1.92
36048289--36048351	31	2.2	27	81	18	74	34	26	9	28	1.88
36048540--36048685	41	3.6	41	88	1	204	19	29	21	30	1.97
36048540--36048713	82	2.1	82	81	4	208	21	28	20	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36051822--36051880	30	2.0	30	86	0	82	28	16	23	30	1.97
36051776--36051909	66	2.0	66	85	0	178	30	14	25	29	1.95
36051782--36051919	36	4.0	36	77	12	128	30	13	26	29	1.94
36056191--36056221	16	1.9	16	93	0	53	67	0	0	32	0.91
36056286--36056340	21	2.8	21	79	15	55	60	3	1	34	1.25
36056293--36056396	20	5.3	20	71	15	58	60	3	1	33	1.26
36056360--36056399	19	2.1	19	90	9	64	70	0	0	30	0.88
36056362--36056400	10	4.0	10	87	12	55	69	0	0	30	0.89
36056541--36056574	16	2.1	16	88	0	50	23	0	0	76	0.79
36056942--36057047	9	11.4	9	70	20	51	30	4	1	63	1.26
36057511--36057560	22	2.3	22	96	0	91	28	34	0	38	1.57
36057511--36057613	52	2.0	52	94	0	179	31	32	0	36	1.58
36057565--36057612	22	2.2	22	88	7	71	33	29	0	37	1.58
36057646--36057703	30	1.9	30	100	0	116	32	0	0	67	0.91
36057670--36057708	20	1.9	21	89	5	62	33	0	0	66	0.92
36057646--36057711	30	2.2	30	94	2	114	33	0	0	66	0.92
36058793--36058830	7	5.4	7	93	0	58	21	0	13	65	1.26
36060020--36061027	29	34.9	29	92	2	1595	45	24	0	29	1.59
36060575--36060617	23	2.0	20	95	4	59	48	20	0	30	1.50
36062805--36062955	27	5.6	27	81	7	171	29	28	15	26	1.96
36074496--36074522	3	9.0	3	100	0	54	0	0	66	33	0.92
36082648--36082750	54	1.9	54	88	4	154	37	12	8	40	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36084185--36084209	3	8.3	3	100	0	50	0	32	0	68	0.90
36086721--36086783	31	2.1	29	82	8	74	46	11	7	34	1.69
36088280--36088332	27	1.9	28	84	3	72	26	11	15	47	1.79
36088308--36088388	32	2.5	32	78	5	85	34	16	8	40	1.79
36097646--36097676	2	15.5	2	100	0	62	51	0	0	48	1.00
36106017--36106065	19	2.5	19	78	12	55	63	0	0	36	0.95
36112241--36112274	3	11.3	3	87	12	52	64	2	0	32	1.08
36119979--36120017	19	2.0	20	90	5	62	7	12	17	61	1.54
36120440--36120471	3	10.3	3	93	6	55	31	0	0	68	0.90
36133028--36133193	44	3.8	43	77	6	156	30	21	23	25	1.99
36132985--36133195	87	2.4	88	80	5	212	30	21	22	25	1.99
36133400--36133695	87	3.4	87	71	10	255	29	18	23	28	1.97
36133400--36133680	43	6.5	43	71	12	148	29	18	22	29	1.97
36133445--36133783	174	2.0	171	88	3	502	29	19	22	28	1.98
36133529--36134025	46	11.5	44	70	14	272	29	19	22	28	1.98
36133468--36133993	174	3.1	169	81	7	469	29	19	23	27	1.98
36133529--36134129	213	2.8	211	82	7	669	30	19	21	27	1.98
36135334--36135372	19	2.0	20	90	5	62	7	12	17	61	1.54
36135796--36135823	3	9.3	3	100	0	56	32	0	0	67	0.91
36139435--36139495	29	2.1	29	81	6	70	42	18	8	31	1.79
36151947--36152089	25	5.7	25	75	12	109	32	20	28	18	1.96
36155124--36155151	2	14.0	2	100	0	56	0	50	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36161506--36161645	76	1.9	75	90	1	226	31	11	10	46	1.74
36162299--36162488	103	1.8	103	85	8	271	35	10	16	37	1.83
36162299--36162510	103	2.0	104	83	7	263	36	11	16	35	1.85
36168995--36169120	43	2.9	42	81	12	148	19	18	30	32	1.95
36169377--36169691	47	7.0	47	85	8	431	33	11	13	41	1.81
36169374--36169640	93	2.9	94	89	1	448	32	10	14	41	1.81
36169374--36169693	140	2.4	130	88	5	453	33	11	13	41	1.80
36169603--36169671	36	1.9	36	100	0	138	30	11	11	46	1.76
36170032--36170058	12	2.2	12	100	0	54	37	0	11	51	1.37
36170221--36170311	25	3.7	24	77	4	101	36	19	26	17	1.94
36171847--36171903	21	2.7	21	91	5	89	40	0	7	52	1.28
36173932--36174001	31	2.3	30	85	9	88	51	4	5	38	1.45
36177926--36177954	6	4.8	6	100	0	58	34	0	13	51	1.42
36183981--36184019	20	2.0	20	85	10	53	48	7	2	41	1.45
36193665--36193748	26	3.0	26	83	13	98	39	3	0	57	1.16
36193668--36193726	17	3.6	17	69	21	54	35	5	0	59	1.20
36193744--36193804	32	1.9	32	83	6	79	34	0	4	60	1.18
36200173--36200241	27	2.6	27	81	4	86	23	20	36	20	1.95
36200300--36200344	21	2.3	19	84	7	54	71	2	24	2	1.09
36202269--36202390	22	5.2	24	80	10	128	38	20	24	16	1.92
36203460--36203496	16	2.3	16	95	0	65	59	0	0	40	0.97
36203459--36203490	8	4.0	8	91	0	55	59	0	0	40	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36203459--36203539	13	6.1	13	73	17	53	55	3	0	40	1.17
36203480--36203556	42	1.9	39	80	17	88	57	5	0	37	1.21
36207713--36207834	60	2.0	60	88	3	183	54	12	0	32	1.44
36207857--36207998	61	2.3	61	97	1	268	56	14	0	29	1.38
36207977--36208036	19	3.1	19	88	9	93	55	13	1	30	1.48
36207972--36208036	21	3.1	21	86	10	98	56	12	1	29	1.45
36208321--36208385	27	2.4	27	78	0	76	16	26	23	33	1.96
36208457--36208502	24	1.9	24	86	0	65	54	4	0	41	1.20
36209139--36209175	19	1.9	19	88	0	56	56	0	0	43	0.99
36209421--36209445	6	4.2	6	100	0	50	48	0	0	52	1.00
36210539--36210590	23	2.3	23	89	0	77	25	26	17	30	1.97
36215847--36216224	125	3.0	125	90	0	585	30	16	22	31	1.95
36219424--36220494	45	23.7	45	77	10	856	26	0	24	48	1.54
36219468--36220516	68	15.4	68	80	9	650	26	0	24	48	1.54
36220185--36220327	74	1.9	74	92	0	241	23	0	23	51	1.53
36219424--36220516	23	48.3	22	74	8	795	26	0	24	48	1.54
36221790--36221827	20	1.9	20	84	10	51	55	7	2	34	1.43
36223404--36223453	25	2.1	24	85	10	68	46	6	2	46	1.39
36225950--36226021	26	2.8	26	73	10	67	37	6	19	36	1.79
36232120--36232156	16	2.3	16	86	13	58	59	0	0	40	0.97
36232506--36232549	21	2.1	21	84	12	56	61	2	6	29	1.34
36236714--36236779	31	2.1	31	86	5	89	25	10	7	56	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36242154--36242216	25	2.5	25	80	10	65	38	3	0	58	1.14
36247636--36247661	5	5.2	5	100	0	52	38	19	19	23	1.93
36248304--36248363	30	2.0	31	83	9	79	41	0	38	20	1.52
36248666--36248696	9	3.4	9	90	0	53	38	22	12	25	1.90
36255178--36255369	49	3.8	50	86	2	260	26	21	30	21	1.98
36257564--36257608	21	2.2	21	88	11	67	55	2	13	28	1.50
36257945--36258004	22	2.7	23	74	5	61	46	3	8	41	1.50
36260538--36260597	28	2.1	28	84	6	77	60	0	6	33	1.23
36260971--36261010	15	2.7	15	84	0	53	57	5	2	35	1.34
36269632--36269680	23	2.1	23	88	0	71	36	2	6	55	1.37

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196